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 Deep Learning


A Process Mining-Based System For The Analysis and Prediction of Software Development Workflows

arXiv.org Artificial Intelligence

CodeSight is an end-to-end system designed to anticipate deadline compliance in software development workflows. It captures development and deployment data directly from GitHub, transforming it into process mining logs for detailed analysis. From these logs, the system generates metrics and dashboards that provide actionable insights into PR activity patterns and workflow efficiency. Building on this structured representation, CodeSight employs an LSTM model that predicts remaining PR resolution times based on sequential activity traces and static features, enabling early identification of potential deadline breaches. In tests, the system demonstrates high precision and F1 scores in predicting deadline compliance, illustrating the value of integrating process mining with machine learning for proactive software project management.


Mixture-of-Experts Operator Transformer for Large-Scale PDE Pre-Training

arXiv.org Artificial Intelligence

Pre-training has proven effective in addressing data scarcity and performance limitations in solving PDE problems with neural operators. However, challenges remain due to the heterogeneity of PDE datasets in equation types, which leads to high errors in mixed training. Additionally, dense pre-training models that scale parameters by increasing network width or depth incur significant inference costs. To tackle these challenges, we propose a novel Mixture-of-Experts Pre-training Operator Transformer (MoE-POT), a sparse-activated architecture that scales parameters efficiently while controlling inference costs. Specifically, our model adopts a layer-wise router-gating network to dynamically select 4 routed experts from 16 expert networks during inference, enabling the model to focus on equation-specific features. Meanwhile, we also integrate 2 shared experts, aiming to capture common properties of PDE and reduce redundancy among routed experts. The final output is computed as the weighted average of the results from all activated experts. We pre-train models with parameters from 30M to 0.5B on 6 public PDE datasets. Our model with 90M activated parameters achieves up to a 40% reduction in zero-shot error compared with existing models with 120M activated parameters. Additionally, we conduct interpretability analysis, showing that dataset types can be inferred from router-gating network decisions, which validates the rationality and effectiveness of the MoE architecture.


DiagramEval: Evaluating LLM-Generated Diagrams via Graphs

arXiv.org Artificial Intelligence

Diagrams play a central role in research papers for conveying ideas, yet they are often notoriously complex and labor-intensive to create. Although diagrams are presented as images, standard image generative models struggle to produce clear diagrams with well-defined structure. We argue that a promising direction is to generate demonstration diagrams directly in textual form as SVGs, which can leverage recent advances in large language models (LLMs). However, due to the complexity of components and the multimodal nature of diagrams, sufficiently discriminative and explainable metrics for evaluating the quality of LLM-generated diagrams remain lacking. In this paper, we propose DiagramEval, a novel evaluation metric designed to assess demonstration diagrams generated by LLMs. Specifically, DiagramEval conceptualizes diagrams as graphs, treating text elements as nodes and their connections as directed edges, and evaluates diagram quality using two new groups of metrics: node alignment and path alignment. For the first time, we effectively evaluate diagrams produced by state-of-the-art LLMs on recent research literature, quantitatively demonstrating the validity of our metrics. Furthermore, we show how the enhanced explainability of our proposed metrics offers valuable insights into the characteristics of LLM-generated diagrams. Code: https://github.com/ulab-uiuc/diagram-eval.


Transformers in Medicine: Improving Vision-Language Alignment for Medical Image Captioning

arXiv.org Artificial Intelligence

We present a transformer-based multimodal framework for generating clinically relevant captions for MRI scans. Our system combines a DEiT-Small vision transformer as an image encoder, Medi-CareBERT for caption embedding, and a custom LSTM-based decoder. The architecture is designed to semantically align image and textual embeddings, using hybrid cosine-MSE loss and contrastive inference via vector similarity. We benchmark our method on the MultiCaRe dataset, comparing performance on filtered brain-only MRIs versus general MRI images against state-of-the-art medical image captioning methods including BLIP, R2GenGPT, and recent transformer-based approaches. Results show that focusing on domain-specific data improves caption accuracy and semantic alignment. Our work proposes a scalable, interpretable solution for automated medical image reporting.


DINO-YOLO: Self-Supervised Pre-training for Data-Efficient Object Detection in Civil Engineering Applications

arXiv.org Artificial Intelligence

Object detection in civil engineering applications is constrained by limited annotated data in specialized domains. We introduce DINO - YOLO, a hybrid architecture combining YOLOv12 with DINOv3 self - supervised vision transformers for data - efficient detection . DINOv3 features are strategically integrated at two locations: input preprocessing (P0) and mid - backbone enhancement (P3). Experimental validation demonstrates substantial improvements: Tunnel Segment Crack detection (648 images) achieves 12.4% improveme nt, Construction PPE (1K images) gains 13.7%, and KITTI (7K images) shows 88.6% improvement, while maintaining real - time inference (30 - 47 FPS). Systematic ablation across five YOLO scales and nine DINOv3 variants reveals that Medium - scale architectures ach ieve optimal performance with DualP0P3 integration (55.77% mAP@0.5), The 2 - 4 inference overhead (21 - 33ms versus 8 - 16ms baseline) remains acceptable for field deployment on NVIDIA RTX 5090. DINO - YOLO establishes state - of - the - art performance for civil engineering datasets (<10K images) while preserving computational efficiency, providing practical solutions for construction safety monitoring and infrastructure inspection in data - constrained environments . Keywords: object detection, DINO pre - trained weights, transfer learning, YOLO, self - supervised learning, small datasets 1. I ntroduction Object detection has emerged as a fundamental computer vision task with widespread applications across numerous domains, from autonomous vehicles to industrial inspection systems. The evolution of deep learning architectures, particularly the You Only Look Once (YOLO) family of models (Khanam and Hussain, 2024; Tian et al., 2025; Wang et al., 2024; Wang and Liao, 2024; Youwai et al., 2024), has significantly advanced real - time object detection capabilities by achieving remarkable balance between accuracy and computational efficiency. However, conventional object detection frameworks face persistent challenges when deployed in specialized do mains with limited training data, where traditional random weight initialization strategies often lead to suboptimal convergence and inadequate feature representation learning.


SynthWorlds: Controlled Parallel Worlds for Disentangling Reasoning and Knowledge in Language Models

arXiv.org Artificial Intelligence

Evaluating the reasoning ability of language models (LMs) is complicated by their extensive parametric world knowledge, where benchmark performance often reflects factual recall rather than genuine reasoning. Existing datasets and approaches (e.g., temporal filtering, paraphrasing, adversarial substitution) cannot cleanly separate the two. We present SynthWorlds, a framework that disentangles task reasoning complexity from factual knowledge. In SynthWorlds, we construct parallel corpora representing two worlds with identical interconnected structure: a real-mapped world, where models may exploit parametric knowledge, and a synthetic-mapped world, where such knowledge is meaningless. On top of these corpora, we design two mirrored tasks as case studies: multi-hop question answering and page navigation, which maintain equal reasoning difficulty across worlds. Experiments in parametric-only (e.g., closed-book QA) and knowledge-augmented (e.g., retrieval-augmented) LM settings reveal a persistent knowledge advantage gap, defined as the performance boost models gain from memorized parametric world knowledge. Knowledge acquisition and integration mechanisms reduce but do not eliminate this gap, highlighting opportunities for system improvements. Fully automatic and scalable, SynthWorlds provides a controlled environment for evaluating LMs in ways that were previously challenging, enabling precise and testable comparisons of reasoning and memorization.


A data free neural operator enabling fast inference of 2D and 3D Navier Stokes equations

arXiv.org Artificial Intelligence

Ensemble simulations of high-dimensional flow models (e.g., Navier-Stokes-type PDEs) are computationally prohibitive for real-time appli cations. Neural operators enable fast inference but are limited by costly data req uirements and poor generalization to 3D flows. We present a data-free operator n etwork for the Navier-Stokes equations that eliminates the need for paire d solution data and enables robust, real-time inference for large ensemble for ecasting. The physics-grounded architecture takes initial and boundary conditio ns as well as forcing functions, yielding solutions robust to high variability a nd perturbations. Across 2D benchmarks and 3D test cases, the method surpasses prior n eural operators in accuracy and, for ensembles, achieves greater efficie ncy than conventional numerical solvers. Notably, it delivers accurate solutions of the three-dimensional Navier-Stokes equations--a regime not previously demonstr ated for data-free neural operators. By uniting a numerically grounded archit ecture with the scalability of machine learning, this approach establishes a pra ctical pathway toward data-free, high-fidelity PDE surrogates for end-to-end sci entific simulation and prediction. Solving PDEs efficiently and accurately is one of the central interests for scienc e and engineering. In addition, when dealing with various boundary conditions, initial con ditions, or external forcing terms of PDEs in fields such as fluid mechanics [1-3], materials science [4, 5], weather forecasting [6, 7], and design optimization [8, 9], P DEs are often required to be solved repeatedly. However, conventional numeric al solvers become prohibitively expensive in such settings, particularly for three-dimensional incompressible Navier-Stokes equations (NSEs) [10, 11]. This is because these s olvers rely on spatial-temporal discretization and iterative treatment of nonline ar terms, while performing time marching that demands substantial memory and computation. Moreover, they are not well suited for solving large ensembles of scenarios simu ltaneously, such as those required for uncertainty quantification or design explora tion. The resulting computational time, coupled with the need for extensive sampling in e nsemble or probabilistic simulations, constitutes a critical bottleneck [7, 12].


Hankel Singular Value Regularization for Highly Compressible State Space Models

arXiv.org Artificial Intelligence

Deep neural networks using state space models as layers are well suited for long-range sequence tasks but can be challenging to compress after training. We use that regularizing the sum of Hankel singular values of state space models leads to a fast decay of these singular values and thus to compressible models. To make the proposed Hankel singular value regularization scalable, we develop an algorithm to efficiently compute the Hankel singular values during training iterations by exploiting the specific block-diagonal structure of the system matrices that we use in our state space model parametrization. Experiments on Long Range Arena benchmarks demonstrate that the regularized state space layers are up to 10$\times$ more compressible than standard state space layers while maintaining high accuracy.


E2Rank: Your Text Embedding can Also be an Effective and Efficient Listwise Reranker

arXiv.org Artificial Intelligence

Text embedding models serve as a fundamental component in real-world search applications. By mapping queries and documents into a shared embedding space, they deliver competitive retrieval performance with high efficiency. However, their ranking fidelity remains limited compared to dedicated rerankers, especially recent LLM-based listwise rerankers, which capture fine-grained query-document and document-document interactions. In this paper, we propose a simple yet effective unified framework E2Rank, means Efficient Embedding-based Ranking (also means Embedding-to-Rank), which extends a single text embedding model to perform both high-quality retrieval and listwise reranking through continued training under a listwise ranking objective, thereby achieving strong effectiveness with remarkable efficiency. By applying cosine similarity between the query and document embeddings as a unified ranking function, the listwise ranking prompt, which is constructed from the original query and its candidate documents, serves as an enhanced query enriched with signals from the top-K documents, akin to pseudo-relevance feedback (PRF) in traditional retrieval models. This design preserves the efficiency and representational quality of the base embedding model while significantly improving its reranking performance. Empirically, E2Rank achieves state-of-the-art results on the BEIR reranking benchmark and demonstrates competitive performance on the reasoning-intensive BRIGHT benchmark, with very low reranking latency. We also show that the ranking training process improves embedding performance on the MTEB benchmark. Our findings indicate that a single embedding model can effectively unify retrieval and reranking, offering both computational efficiency and competitive ranking accuracy.


Accelerating Data Generation for Nonlinear temporal PDEs via homologous perturbation in solution space

arXiv.org Artificial Intelligence

Data-driven deep learning methods like neural operators have advanced in solving nonlinear temporal partial differential equations (PDEs). However, these methods require large quantities of solution pairs\u2014the solution functions and right-hand sides (RHS) of the equations. These pairs are typically generated via traditional numerical methods, which need thousands of time steps iterations far more than the dozens required for training, creating heavy computational and temporal overheads. To address these challenges, we propose a novel data generation algorithm, called HOmologous Perturbation in Solution Space (HOPSS), which directly generates training datasets with fewer time steps rather than following the traditional approach of generating large time steps datasets. This algorithm simultaneously accelerates dataset generation and preserves the approximate precision required for model training. Specifically, we first obtain a set of base solution functions from a reliable solver, usually with thousands of time steps, and then align them in time steps with training datasets by downsampling. Subsequently, we propose a "homologous perturbation" approach: by combining two solution functions (one as the primary function, the other as a homologous perturbation term scaled by a small scalar) with random noise, we efficiently generate comparable-precision PDE data points. Finally, using these data points, we compute the variation in the original equation's RHS to form new solution pairs. Theoretical and experimental results show HOPSS lowers time complexity. For example, on the Navier-Stokes equation, it generates 10,000 samples in approximately 10% of traditional methods' time, with comparable model training performance.