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 Deep Learning


Decoupled Variational Embedding for Signed Directed Networks

arXiv.org Machine Learning

Node representation learning for signed directed networks has received considerable attention in many real-world applications such as link sign prediction, node classification and node recommendation. The challenge lies in how to adequately encode the complex topological information of the networks. Recent studies mainly focus on preserving the first-order network topology which indicates the closeness relationships of nodes. However, these methods generally fail to capture the high-order topology which indicates the local structures of nodes and serves as an essential characteristic of the network topology. In addition, for the first-order topology, the additional value of non-existent links is largely ignored. In this paper, we propose to learn more representative node embeddings by simultaneously capturing the first-order and high-order topology in signed directed networks. In particular, we reformulate the representation learning problem on signed directed networks from a variational auto-encoding perspective and further develop a decoupled variational embedding (DVE) method. DVE leverages a specially designed auto-encoder structure to capture both the first-order and high-order topology of signed directed networks, and thus learns more representative node embedding. Extensive experiments are conducted on three widely used real-world datasets. Comprehensive results on both link sign prediction and node recommendation task demonstrate the effectiveness of DVE. Qualitative results and analysis are also given to provide a better understanding of DVE.


Deep sr-DDL: Deep Structurally Regularized Dynamic Dictionary Learning to Integrate Multimodal and Dynamic Functional Connectomics data for Multidimensional Clinical Characterizations

arXiv.org Machine Learning

We propose a novel integrated framework that jointly models complementary information from resting-state functional MRI (rs-fMRI) connectivity and diffusion tensor imaging (DTI) tractography to extract biomarkers of brain connectivity predictive of behavior. Our framework couples a generative model of the connectomics data with a deep network that predicts behavioral scores. The generative component is a structurally-regularized Dynamic Dictionary Learning (sr-DDL) model that decomposes the dynamic rs-fMRI correlation matrices into a collection of shared basis networks and time varying subject-specific loadings. We use the DTI tractography to regularize this matrix factorization and learn anatomically informed functional connectivity profiles. The deep component of our framework is an LSTM-ANN block, which uses the temporal evolution of the subject-specific sr-DDL loadings to predict multidimensional clinical characterizations. Our joint optimization strategy collectively estimates the basis networks, the subject-specific time-varying loadings, and the neural network weights. We validate our framework on a dataset of neurotypical individuals from the Human Connectome Project (HCP) database to map to cognition and on a separate multi-score prediction task on individuals diagnosed with Autism Spectrum Disorder (ASD) in a five-fold cross validation setting. Our hybrid model outperforms several state-of-the-art approaches at clinical outcome prediction and learns interpretable multimodal neural signatures of brain organization.


Forecasting with Multiple Seasonality

arXiv.org Machine Learning

An emerging number of modern applications involve forecasting time series data that exhibit both short-time dynamics and long-time seasonality. Specifically, time series with multiple seasonality is a difficult task with comparatively fewer discussions. In this paper, we propose a two-stage method for time series with multiple seasonality, which does not require pre-determined seasonality periods. In the first stage, we generalize the classical seasonal autoregressive moving average (ARMA) model in multiple seasonality regime. In the second stage, we utilize an appropriate criterion for lag order selection. Simulation and empirical studies show the excellent predictive performance of our method, especially compared to a recently popular `Facebook Prophet' model for time series.


Adversarially Robust Learning via Entropic Regularization

arXiv.org Machine Learning

In this paper we propose a new family of algorithms for training adversarially robust deep neural networks. We formulate a new loss function that uses an entropic regularization. Our loss function considers the contribution of adversarial samples which are drawn from a specially designed distribution that assigns high probability to points with high loss from the immediate neighborhood of training samples. Our data entropy guided SGD approach is designed to search for adversarially robust valleys of the loss landscape. We observe that our approach generalizes better in terms of classification accuracy robustness as compared to state of art approaches based on projected gradient descent.


Learning Compact Physics-Aware Delayed Photocurrent Models Using Dynamic Mode Decomposition

arXiv.org Machine Learning

Radiation-induced photocurrent in semiconductor devices can be simulated using complex physics-based models, which are accurate, but computationally expensive. This presents a challenge for implementing device characteristics in high-level circuit simulations where it is computationally infeasible to evaluate detailed models for multiple individual circuit elements. In this work we demonstrate a procedure for learning compact delayed photocurrent models that are efficient enough to implement in large-scale circuit simulations, but remain faithful to the underlying physics. Our approach utilizes Dynamic Mode Decomposition (DMD), a system identification technique for learning reduced order discrete-time dynamical systems from time series data based on singular value decomposition. To obtain physics-aware device models, we simulate the excess carrier density induced by radiation pulses by solving numerically the Ambipolar Diffusion Equation, then use the simulated internal state as training data for the DMD algorithm. Our results show that the significantly reduced order delayed photocurrent models obtained via this method accurately approximate the dynamics of the internal excess carrier density -- which can be used to calculate the induced current at the device boundaries -- while remaining compact enough to incorporate into larger circuit simulations.


learn2learn: A Library for Meta-Learning Research

arXiv.org Machine Learning

Meta-learning researchers face two fundamental issues in their empirical work: prototyping and reproducibility. Researchers are prone to make mistakes when prototyping new algorithms and tasks because modern meta-learning methods rely on unconventional functionalities of machine learning frameworks. In turn, reproducing existing results becomes a tedious endeavour -- a situation exacerbated by the lack of standardized implementations and benchmarks. As a result, researchers spend inordinate amounts of time on implementing software rather than understanding and developing new ideas. This manuscript introduces learn2learn, a library for meta-learning research focused on solving those prototyping and reproducibility issues. learn2learn provides low-level routines common across a wide-range of meta-learning techniques (e.g. meta-descent, meta-reinforcement learning, few-shot learning), and builds standardized interfaces to algorithms and benchmarks on top of them. In releasing learn2learn under a free and open source license, we hope to foster a community around standardized software for meta-learning research.


Collaborative Fairness in Federated Learning

arXiv.org Machine Learning

In current deep learning paradigms, local training or the Standalone framework tends to result in overfitting and thus poor generalizability. This problem can be addressed by Distributed or Federated Learning (FL) that leverages a parameter server to aggregate model updates from individual participants. However, most existing Distributed or FL frameworks have overlooked an important aspect of participation: collaborative fairness. In particular, all participants can receive the same or similar models, regardless of their contributions. To address this issue, we investigate the collaborative fairness in FL, and propose a novel Collaborative Fair Federated Learning (CFFL) framework which utilizes reputation to enforce participants to converge to different models, thus achieving fairness without compromising the predictive performance. Extensive experiments on benchmark datasets demonstrate that CFFL achieves high fairness, delivers comparable accuracy to the Distributed framework, and outperforms the Standalone framework.


Meta-Learning with Shared Amortized Variational Inference

arXiv.org Machine Learning

We propose a novel amortized variational inference scheme for an empirical Bayes meta-learning model, where model parameters are treated as latent variables. We learn the prior distribution over model parameters conditioned on limited training data using a variational autoencoder approach. Our framework proposes sharing the same amortized inference network between the conditional prior and variational posterior distributions over the model parameters. While the posterior leverages both the labeled support and query data, the conditional prior is based only on the labeled support data. We show that in earlier work, relying on Monte-Carlo approximation, the conditional prior collapses to a Dirac delta function. In contrast, our variational approach prevents this collapse and preserves uncertainty over the model parameters. We evaluate our approach on the miniImageNet, CIFAR-FS and FC100 datasets, and present results demonstrating its advantages over previous work.


Time-based Sequence Model for Personalization and Recommendation Systems

arXiv.org Machine Learning

Recommendation systems play an important role in many e-commerce applications as well as search and ranking services [6, 15, 21, 26, 30, 31, 41, 48]. There are two main strategies to perform recommendations: content and collaborative filtering. In content filtering the user creates a profile based on its interest, while human experts create a profile for the product. An algorithm matches the two profiles and recommends the closest matches to the user. For example, this approach is taken by the Pandora Music Genome Project [29]. In collaborative filtering, the recommendations are based only on user past behavior from which the future behavior is derived. The advantage of this approach is that it requires no external information and is not domain specific. The challenge is that in the beginning very few user-item interactions are available. For instance, this cold start problem is addressed by Netflix by asking the user for a few favorite movies when creating their profile for the first time [27].


Graph Neural Network Architecture Search for Molecular Property Prediction

arXiv.org Machine Learning

Predicting the properties of a molecule from its structure is a challenging task. Recently, deep learning methods have improved the state of the art for this task because of their ability to learn useful features from the given data. By treating molecule structure as graphs, where atoms and bonds are modeled as nodes and edges, graph neural networks (GNNs) have been widely used to predict molecular properties. However, the design and development of GNNs for a given data set rely on labor-intensive design and tuning of the network architectures. Neural architecture search (NAS) is a promising approach to discover high-performing neural network architectures automatically. To that end, we develop an NAS approach to automate the design and development of GNNs for molecular property prediction. Specifically, we focus on automated development of message-passing neural networks (MPNNs) to predict the molecular properties of small molecules in quantum mechanics and physical chemistry data sets from the MoleculeNet benchmark. We demonstrate the superiority of the automatically discovered MPNNs by comparing them with manually designed GNNs from the MoleculeNet benchmark. We study the relative importance of the choices in the MPNN search space, demonstrating that customizing the architecture is critical to enhancing performance in molecular property prediction and that the proposed approach can perform customization automatically with minimal manual effort.