Deep Learning
ODE-ViT: Plug & Play Attention Layer from the Generalization of the ViT as an Ordinary Differential Equation
Riera, Carlos Boned, Sanchez, David Romero, Terrades, Oriol Ramos
In recent years, increasingly large models have achieved outstanding performance across CV tasks. However, these models demand substantial computational resources and storage, and their growing complexity limits our understanding of how they make decisions. Most of these architectures rely on the attention mechanism within Transformer-based designs. Building upon the connection between residual neural networks and ordinary differential equations (ODEs), we introduce ODE-ViT, a Vision Transformer reformulated as an ODE system that satisfies the conditions for well-posed and stable dynamics. Experiments on CIFAR-10 and CIFAR-100 demonstrate that ODE-ViT achieves stable, interpretable, and competitive performance with up to one order of magnitude fewer parameters, surpassing prior ODE-based Transformer approaches in classification tasks. We further propose a plug-and-play teacher-student framework in which a discrete ViT guides the continuous trajectory of ODE-ViT by treating the intermediate representations of the teacher as solutions of the ODE. This strategy improves performance by more than 10% compared to training a free ODE-ViT from scratch.
Physics-Informed Machine Learning for Efficient Sim-to-Real Data Augmentation in Micro-Object Pose Estimation
Tan, Zongcai, Wei, Lan, Zhang, Dandan
Precise pose estimation of optical microrobots is essential for enabling high-precision object tracking and autonomous biological studies. However, current methods rely heavily on large, high-quality microscope image datasets, which are difficult and costly to acquire due to the complexity of microrobot fabrication and the labour-intensive labelling. Digital twin systems offer a promising path for sim-to-real data augmentation, yet existing techniques struggle to replicate complex optical microscopy phenomena, such as diffraction artifacts and depth-dependent imaging.This work proposes a novel physics-informed deep generative learning framework that, for the first time, integrates wave optics-based physical rendering and depth alignment into a generative adversarial network (GAN), to synthesise high-fidelity microscope images for microrobot pose estimation efficiently. Our method improves the structural similarity index (SSIM) by 35.6% compared to purely AI-driven methods, while maintaining real-time rendering speeds (0.022 s/frame).The pose estimator (CNN backbone) trained on our synthetic data achieves 93.9%/91.9% (pitch/roll) accuracy, just 5.0%/5.4% (pitch/roll) below that of an estimator trained exclusively on real data. Furthermore, our framework generalises to unseen poses, enabling data augmentation and robust pose estimation for novel microrobot configurations without additional training data.
Music Recommendation with Large Language Models: Challenges, Opportunities, and Evaluation
Epure, Elena V., Deldjoo, Yashar, Sguerra, Bruno, Schedl, Markus, Moussallam, Manuel
Music Recommender Systems (MRS) have long relied on an information-retrieval framing, where progress is measured mainly through accuracy on retrieval-oriented subtasks. While effective, this reductionist paradigm struggles to address the deeper question of what makes a good recommendation, and attempts to broaden evaluation, through user studies or fairness analyses, have had limited impact. The emergence of Large Language Models (LLMs) disrupts this framework: LLMs are generative rather than ranking-based, making standard accuracy metrics questionable. They also introduce challenges such as hallucinations, knowledge cutoffs, non-determinism, and opaque training data, rendering traditional train/test protocols difficult to interpret. At the same time, LLMs create new opportunities, enabling natural-language interaction and even allowing models to act as evaluators. This work argues that the shift toward LLM-driven MRS requires rethinking evaluation. We first review how LLMs reshape user modeling, item modeling, and natural-language recommendation in music. We then examine evaluation practices from NLP, highlighting methodologies and open challenges relevant to MRS. Finally, we synthesize insights-focusing on how LLM prompting applies to MRS, to outline a structured set of success and risk dimensions. Our goal is to provide the MRS community with an updated, pedagogical, and cross-disciplinary perspective on evaluation.
Arctic-Extract Technical Report
Chiliลski, Mateusz, Oลtusek, Julita, Jaลkowski, Wojciech
Arctic-Extract is a state-of-the-art model designed for extracting structural data (question answering, entities and tables) from scanned or digital-born business documents. Despite its SoTA capabilities, the model is deployable on resource-constrained hardware, weighting only 6.6 GiB, making it suitable for deployment on devices with limited resources, such as A10 GPUs with 24 GB of memory. Arctic-Extract can process up to 125 A4 pages on those GPUs, making suitable for long document processing. This paper highlights Arctic-Extract's training protocols and evaluation results, demonstrating its strong performance in document understanding.
Anatomy of an Idiom: Tracing Non-Compositionality in Language Models
We investigate the processing of idiomatic expressions in transformer-based language models using a novel set of techniques for circuit discovery and analysis. First discovering circuits via a modified path patching algorithm, we find that idiom processing exhibits distinct computational patterns. We identify and investigate ``Idiom Heads,'' attention heads that frequently activate across different idioms, as well as enhanced attention between idiom tokens due to earlier processing, which we term ``augmented reception.'' We analyze these phenomena and the general features of the discovered circuits as mechanisms by which transformers balance computational efficiency and robustness. Finally, these findings provide insights into how transformers handle non-compositional language and suggest pathways for understanding the processing of more complex grammatical constructions.
From generative AI to the brain: five takeaways
The big strides seen in generative AI are not based on somewhat obscure algorithms, but due to clearly defined generative principles. The resulting concrete implementations have proven themselves in large numbers of applications. We suggest that it is imperative to thoroughly investigate which of these generative principles may be operative also in the brain, and hence relevant for cognitive neuroscience. In addition, ML research led to a range of interesting characterizations of neural information processing systems. We discuss five examples, the shortcomings of world modelling, the generation of thought processes, attention, neural scaling laws, and quantization, that illustrate how much neuroscience could potentially learn from ML research.
Graph Neural Networks for Surgical Scene Segmentation
Li, Yihan, Churamani, Nikhil, Robu, Maria, Luengo, Imanol, Stoyanov, Danail
Purpose: Accurate identification of hepatocystic anatomy is critical to preventing surgical complications during laparoscopic cholecystectomy. Deep learning models often struggle with occlusions, long-range dependencies, and capturing the fine-scale geometry of rare structures. This work addresses these challenges by introducing graph-based segmentation approaches that enhance spatial and semantic understanding in surgical scene analyses. Methods: We propose two segmentation models integrating Vision Transformer (ViT) feature encoders with Graph Neural Networks (GNNs) to explicitly model spatial relationships between anatomical regions. (1) A static k Nearest Neighbours (k-NN) graph with a Graph Convolutional Network with Initial Residual and Identity Mapping (GCNII) enables stable long-range information propagation. (2) A dynamic Differentiable Graph Generator (DGG) with a Graph Attention Network (GAT) supports adaptive topology learning. Both models are evaluated on the Endoscapes-Seg50 and CholecSeg8k benchmarks. Results: The proposed approaches achieve up to 7-8% improvement in Mean Intersection over Union (mIoU) and 6% improvement in Mean Dice (mDice) scores over state-of-the-art baselines. It produces anatomically coherent predictions, particularly on thin, rare and safety-critical structures. Conclusion: The proposed graph-based segmentation methods enhance both performance and anatomical consistency in surgical scene segmentation. By combining ViT-based global context with graph-based relational reasoning, the models improve interpretability and reliability, paving the way for safer laparoscopic and robot-assisted surgery through a precise identification of critical anatomical features.
Generative Modeling of Clinical Time Series via Latent Stochastic Differential Equations
Aslanimoghanloo, Muhammad, ElGazzar, Ahmed, van Gerven, Marcel
Clinical time series data from electronic health records and medical registries offer unprecedented opportunities to understand patient trajectories and inform medical decision-making. However, leveraging such data presents significant challenges due to irregular sampling, complex latent physiology, and inherent uncertainties in both measurements and disease progression. To address these challenges, we propose a generative modeling framework based on latent neural stochastic differential equations (SDEs) that views clinical time series as discrete-time partial observations of an underlying controlled stochastic dynamical system. This formulation naturally handles irregularly sampled observations, learns complex non-linear interactions, and captures the stochasticity of disease progression and measurement noise within a unified scalable probabilistic framework. Results show that our framework outperforms ordinary differential equation and long short-term memory baseline models in accuracy and uncertainty estimation. These results highlight its potential for enabling precise, uncertainty-aware predictions to support clinical decision-making. Introduction Predicting patient trajectories is critical for enabling timely interventions, better understanding of disease progression, and developing personalized medicine [1]. For instance, early detection of sepsis has been shown to significantly reduce the risk of organ failure and mortality [2]. This potential is increasingly becoming feasible due to the rapid growth of available healthcare data like electronic health records (EHRs) [3]. A defining feature of healthcare data are their temporal nature, reflecting the dynamic evolution of patient conditions over time. These temporal patterns highlight the need for time series models specifically tailored to the complexities of clinical data. However, healthcare time series have unique characteristics such as missing values, irregular sampling, aleatoric uncertainty, and patient-specific variability, that make modeling them particularly challenging [5, 6]. Traditional time series models, such as autoregressive moving average (ARIMA) models, have been applied to healthcare data but often struggle with its complexity and irregularity [7].
Pharos-ESG: A Framework for Multimodal Parsing, Contextual Narration, and Hierarchical Labeling of ESG Report
Chen, Yan, Zou, Yu, Zeng, Jialei, You, Haoran, Zhou, Xiaorui, Zhong, Aixi
Environmental, Social, and Governance (ESG) principles are reshaping the foundations of global financial gover- nance, transforming capital allocation architectures, regu- latory frameworks, and systemic risk coordination mecha- nisms. However, as the core medium for assessing corpo- rate ESG performance, the ESG reports present significant challenges for large-scale understanding, due to chaotic read- ing order from slide-like irregular layouts and implicit hier- archies arising from lengthy, weakly structured content. To address these challenges, we propose Pharos-ESG, a uni- fied framework that transforms ESG reports into structured representations through multimodal parsing, contextual nar- ration, and hierarchical labeling. It integrates a reading-order modeling module based on layout flow, hierarchy-aware seg- mentation guided by table-of-contents anchors, and a multi- modal aggregation pipeline that contextually transforms vi- sual elements into coherent natural language. The framework further enriches its outputs with ESG, GRI, and sentiment labels, yielding annotations aligned with the analytical de- mands of financial research. Extensive experiments on anno- tated benchmarks demonstrate that Pharos-ESG consistently outperforms both dedicated document parsing systems and general-purpose multimodal models. In addition, we release Aurora-ESG, the first large-scale public dataset of ESG re- ports, spanning Mainland China, Hong Kong, and U.S. mar- kets, featuring unified structured representations of multi- modal content, enriched with fine-grained layout and seman- tic annotations to better support ESG integration in financial governance and decision-making.
Classification of worldwide news articles by perceived quality, 2018-2024
McElroy, Connor, de Oliveira, Thiago E. A., Brogly, Chris
This study explored whether supervised machine learning and deep learning models can effectively distinguish perceived lower-quality news articles from perceived higher-quality news articles. 3 machine learning classifiers and 3 deep learning models were assessed using a newly created dataset of 1,412,272 English news articles from the Common Crawl over 2018-2024. Expert consensus ratings on 579 source websites were split at the median, creating perceived low and high-quality classes of about 706,000 articles each, with 194 linguistic features per website-level labelled article. Traditional machine learning classifiers such as the Random Forest demonstrated capable performance (0.7355 accuracy, 0.8131 ROC AUC). For deep learning, ModernBERT-large (256 context length) achieved the best performance (0.8744 accuracy; 0.9593 ROC-AUC; 0.8739 F1), followed by DistilBERT-base (512 context length) at 0.8685 accuracy and 0.9554 ROC-AUC. DistilBERT-base (256 context length) reached 0.8478 accuracy and 0.9407 ROC-AUC, while ModernBERT-base (256 context length) attained 0.8569 accuracy and 0.9470 ROC-AUC. These results suggest that the perceived quality of worldwide news articles can be effectively differentiated by traditional CPU-based machine learning classifiers and deep learning classifiers.