We present a nonparametric hierarchical Bayesian model of document collections that decouples sparsity and smoothness in the component distributions (i.e., the "topics"). In the sparse topic model (sparseTM), each topic is represented by a bank of selector variables that determine which terms appear in the topic. Thus each topic is associated with a subset of the vocabulary, and topic smoothness is modeled on this subset. We develop an efficient Gibbs sampler for the sparseTM that includes a general-purpose method for sampling from a Dirichlet mixture with a combinatorial number of components. We demonstrate the sparseTM on four real-world datasets. Compared to traditional approaches, the empirical results will show that sparseTMs give better predictive performance with simpler inferred models.

While many perceptual and cognitive phenomena are well described in terms of Bayesian inference, the necessary computations are intractable at the scale of real-world tasks, and it remains unclear how the human mind approximates Bayesian inference algorithmically. We explore the proposal that for some tasks, humans use a form of Markov Chain Monte Carlo to approximate the posterior distribution over hidden variables. As a case study, we show how several phenomena of perceptual multistability can be explained as MCMC inference in simple graphical models for low-level vision.

Principal Components Analysis (PCA) has become established as one of the key tools for dimensionality reduction when dealing with real valued data. Approaches such as exponential family PCA and non-negative matrix factorisation have successfully extended PCA to non-Gaussian data types, but these techniques fail to take advantage of Bayesian inference and can suffer from problems of overfitting and poor generalisation. This paper presents a fully probabilistic approach to PCA, which is generalised to the exponential family, based on Hybrid Monte Carlo sampling. We describe the model which is based on a factorisation of the observed data matrix, and show performance of the model on both synthetic and real data.

Everyday social interactions are heavily influenced by our snap judgments about others' goals. Even young infants can infer the goals of intentional agents from observing how they interact with objects and other agents in their environment: e.g., that one agent is'helping' or'hindering' another's attempt to get up a hill or open a box. We propose a model for how people can infer these social goals from actions, based on inverse planning in multiagent Markov decision problems (MDPs). The model infers the goal most likely to be driving an agent's behavior byassuming the agent acts approximately rationally given environmental constraints andits model of other agents present.

This paper proposes a new algorithm for the linear least squares problem where the unknown variables are constrained to be in a finite set. The factor graph that corresponds to this problem is very loopy; in fact, it is a complete graph. Hence, applying the Belief Propagation (BP) algorithm yields very poor results. The algorithm described here is based on an optimal tree approximation of the Gaussian density of the unconstrained linear system. It is shown that even though the approximation is not directly applied to the exact discrete distribution, applying the BP algorithm to the modified factor graph outperforms current methods in terms of both performance and complexity. The improved performance of the proposed algorithm is demonstrated on the problem of MIMO detection.

Many categories are better described by providing relational information than listing characteristic features. We present a hierarchical generative model that helps to explain how relational categories are learned and used. Our model learns abstract schemata that specify the relational similarities shared by members of a category, and our emphasis on abstraction departs from previous theoretical proposals that focus instead on comparison of concrete instances. Our first experiment suggests that our abstraction-based account can address some of the tasks that have previously been used to support comparison-based approaches. Our second experiment focuses on one-shot schema learning, a problem that raises challenges for comparison-based approaches but is handled naturally by our abstraction-based account.

Accurate and efficient inference in evolutionary trees is a central problem in computational biology.While classical treatments have made unrealistic site independence assumptions, ignoring insertions and deletions, realistic approaches require tracking insertions and deletions along the phylogenetic tree--a challenging and unsolved computational problem. We propose a new ancestry resampling procedure for inference in evolutionary trees. We evaluate our method in two problem domains--multiple sequence alignment and reconstruction of ancestral sequences--and show substantial improvement over the current state of the art.

Offline handwriting recognition---the transcription of images of handwritten text---is an interesting task, in that it combines computer vision with sequence learning. In most systems the two elements are handled separately, with sophisticated preprocessing techniques used to extract the image features and sequential models such as HMMs used to provide the transcriptions. By combining two recent innovations in neural networks---multidimensional recurrent neural networks and connectionist temporal classification---this paper introduces a globally trained offline handwriting recogniser that takes raw pixel data as input. Unlike competing systems, it does not require any alphabet specific preprocessing, and can therefore be used unchanged for any language. Evidence of its generality and power is provided by data from a recent international Arabic recognition competition, where it outperformed all entries (91.4% accuracy compared to 87.2% for the competition winner) despite the fact that neither author understands a word of Arabic.

We introduce a kernel-based method for change-point analysis within a sequence of temporal observations. Change-point analysis of an (unlabelled) sample of observations consists in, first, testing whether a change in the distribution occurs within the sample, and second, if a change occurs, estimating the change-point instant after which the distribution of the observations switches from one distribution to another different distribution. We propose a test statistics based upon the maximum kernel Fisher discriminant ratio as a measure of homogeneity between segments. We derive its limiting distribution under the null hypothesis (no change occurs), and establish the consistency under the alternative hypothesis (a change occurs). This allows to build a statistical hypothesis testing procedure for testing the presence of change-point, with a prescribed false-alarm probability and detection probability tending to one in the large-sample setting. If a change actually occurs, the test statistics also yields an estimator of the change-point location. Promising experimental results in temporal segmentation of mental tasks from BCI data and pop song indexation are presented.

The Indian buffet process (IBP) is an exchangeable distribution over binary matrices used in Bayesian nonparametric featural models. In this paper we propose a three-parameter generalization of the IBP exhibiting power-law behavior. We achieve this by generalizing the beta process (the de Finetti measure of the IBP) to the \emph{stable-beta process} and deriving the IBP corresponding to it. We find interesting relationships between the stable-beta process and the Pitman-Yor process (another stochastic process used in Bayesian nonparametric models with interesting power-law properties). We show that our power-law IBP is a good model for word occurrences in documents with improved performance over the normal IBP.