Learning Graphical Models
A Variational Bayesian State-Space Approach to Online Passive-Aggressive Regression
Salas, Arnold, Roberts, Stephen J., Osborne, Michael A.
Online Passive-Aggressive (PA) learning is a class of online margin-based algorithms suitable for a wide range of real-time prediction tasks, including classification and regression. PA algorithms are formulated in terms of deterministic point-estimation problems governed by a set of user-defined hyperparameters: the approach fails to capture model/prediction uncertainty and makes their performance highly sensitive to hyperparameter configurations. In this paper, we introduce a novel PA learning framework for regression that overcomes the above limitations. We contribute a Bayesian state-space interpretation of PA regression, along with a novel online variational inference scheme, that not only produces probabilistic predictions, but also offers the benefit of automatic hyperparameter tuning. Experiments with various real-world data sets show that our approach performs significantly better than a more standard, linear Gaussian state-space model.
Supervised Collective Classification for Crowdsourcing
Chen, Pin-Yu, Lien, Chia-Wei, Chu, Fu-Jen, Ting, Pai-Shun, Cheng, Shin-Ming
Crowdsourcing utilizes the wisdom of crowds for collective classification via information (e.g., labels of an item) provided by labelers. Current crowdsourcing algorithms are mainly unsupervised methods that are unaware of the quality of crowdsourced data. In this paper, we propose a supervised collective classification algorithm that aims to identify reliable labelers from the training data (e.g., items with known labels). The reliability (i.e., weighting factor) of each labeler is determined via a saddle point algorithm. The results on several crowdsourced data show that supervised methods can achieve better classification accuracy than unsupervised methods, and our proposed method outperforms other algorithms.
Fuzzy Jets
Mackey, Lester, Nachman, Benjamin, Schwartzman, Ariel, Stansbury, Conrad
Collimated streams of particles produced in high energy physics experiments are organized using clustering algorithms to form jets. To construct jets, the experimental collaborations based at the Large Hadron Collider (LHC) primarily use agglomerative hierarchical clustering schemes known as sequential recombination. We propose a new class of algorithms for clustering jets that use infrared and collinear safe mixture models. These new algorithms, known as fuzzy jets, are clustered using maximum likelihood techniques and can dynamically determine various properties of jets like their size. We show that the fuzzy jet size adds additional information to conventional jet tagging variables. Furthermore, we study the impact of pileup and show that with some slight modifications to the algorithm, fuzzy jets can be stable up to high pileup interaction multiplicities.
Simultaneous Clustering and Model Selection for Multinomial Distribution: A Comparative Study
Hasnat, Md. Abul, Velcin, Julien, Bonnevay, Stéphane, Jacques, Julien
In this paper, we study different discrete data clustering methods, which use the Model-Based Clustering (MBC) framework with the Multinomial distribution. Our study comprises several relevant issues, such as initialization, model estimation and model selection. Additionally, we propose a novel MBC method by efficiently combining the partitional and hierarchical clustering techniques. We conduct experiments on both synthetic and real data and evaluate the methods using accuracy, stability and computation time. Our study identifies appropriate strategies to be used for discrete data analysis with the MBC methods. Moreover, our proposed method is very competitive w.r.t. clustering accuracy and better w.r.t. stability and computation time.
On Graphical Models via Univariate Exponential Family Distributions
Yang, Eunho, Ravikumar, Pradeep, Allen, Genevera I., Liu, Zhandong
Undirected graphical models, or Markov networks, are a popular class of statistical models, used in a wide variety of applications. Popular instances of this class include Gaussian graphical models and Ising models. In many settings, however, it might not be clear which subclass of graphical models to use, particularly for non-Gaussian and non-categorical data. In this paper, we consider a general sub-class of graphical models where the node-wise conditional distributions arise from exponential families. This allows us to derive multivariate graphical model distributions from univariate exponential family distributions, such as the Poisson, negative binomial, and exponential distributions. Our key contributions include a class of M-estimators to fit these graphical model distributions; and rigorous statistical analysis showing that these M-estimators recover the true graphical model structure exactly, with high probability. We provide examples of genomic and proteomic networks learned via instances of our class of graphical models derived from Poisson and exponential distributions.
Particle approximations of the score and observed information matrix for parameter estimation in state space models with linear computational cost
Nemeth, Christopher, Fearnhead, Paul, Mihaylova, Lyudmila
Poyiadjis et al. (2011) show how particle methods can be used to estimate both the score and the observed information matrix for state space models. These methods either suffer from a computational cost that is quadratic in the number of particles, or produce estimates whose variance increases quadratically with the amount of data. This paper introduces an alternative approach for estimating these terms at a computational cost that is linear in the number of particles. The method is derived using a combination of kernel density estimation, to avoid the particle degeneracy that causes the quadratically increasing variance, and Rao-Blackwellisation. Crucially, we show the method is robust to the choice of bandwidth within the kernel density estimation, as it has good asymptotic properties regardless of this choice. Our estimates of the score and observed information matrix can be used within both online and batch procedures for estimating parameters for state space models. Empirical results show improved parameter estimates compared to existing methods at a significantly reduced computational cost. Supplementary materials including code are available.
Stochastic gradient variational Bayes for gamma approximating distributions
While stochastic variational inference is relatively well known for scaling inference in Bayesian probabilistic models, related methods also offer ways to circumnavigate the approximation of analytically intractable expectations. The key challenge in either setting is controlling the variance of gradient estimates: recent work has shown that for continuous latent variables, particularly multivariate Gaussians, this can be achieved by using the gradient of the log posterior. In this paper we apply the same idea to gamma distributed latent variables given gamma variational distributions, enabling straightforward "black box" variational inference in models where sparsity and non-negativity are appropriate. We demonstrate the method on a recently proposed gamma process model for network data, as well as a novel sparse factor analysis. We outperform generic sampling algorithms and the approach of using Gaussian variational distributions on transformed variables.
Quasi-Newton particle Metropolis-Hastings
Dahlin, Johan, Lindsten, Fredrik, Schön, Thomas B.
Particle Metropolis-Hastings enables Bayesian parameter inference in general nonlinear state space models (SSMs). However, in many implementations a random walk proposal is used and this can result in poor mixing if not tuned correctly using tedious pilot runs. Therefore, we consider a new proposal inspired by quasi-Newton algorithms that may achieve similar (or better) mixing with less tuning. An advantage compared to other Hessian based proposals, is that it only requires estimates of the gradient of the log-posterior. A possible application is parameter inference in the challenging class of SSMs with intractable likelihoods. We exemplify this application and the benefits of the new proposal by modelling log-returns of future contracts on coffee by a stochastic volatility model with $\alpha$-stable observations.
Reliable ABC model choice via random forests
Pudlo, Pierre, Marin, Jean-Michel, Estoup, Arnaud, Cornuet, Jean-Marie, Gautier, Mathieu, Robert, Christian P.
Approximate Bayesian computation (ABC) methods provide an elaborate approach to Bayesian inference on complex models, including model choice. Both theoretical arguments and simulation experiments indicate, however, that model posterior probabilities may be poorly evaluated by standard ABC techniques. We propose a novel approach based on a machine learning tool named random forests to conduct selection among the highly complex models covered by ABC algorithms. We thus modify the way Bayesian model selection is both understood and operated, in that we rephrase the inferential goal as a classification problem, first predicting the model that best fits the data with random forests and postponing the approximation of the posterior probability of the predicted MAP for a second stage also relying on random forests. Compared with earlier implementations of ABC model choice, the ABC random forest approach offers several potential improvements: (i) it often has a larger discriminative power among the competing models, (ii) it is more robust against the number and choice of statistics summarizing the data, (iii) the computing effort is drastically reduced (with a gain in computation efficiency of at least fifty), and (iv) it includes an approximation of the posterior probability of the selected model. The call to random forests will undoubtedly extend the range of size of datasets and complexity of models that ABC can handle. We illustrate the power of this novel methodology by analyzing controlled experiments as well as genuine population genetics datasets. The proposed methodologies are implemented in the R package abcrf available on the CRAN.
Fast rates in statistical and online learning
van Erven, Tim, Grünwald, Peter D., Mehta, Nishant A., Reid, Mark D., Williamson, Robert C.
The speed with which a learning algorithm converges as it is presented with more data is a central problem in machine learning --- a fast rate of convergence means less data is needed for the same level of performance. The pursuit of fast rates in online and statistical learning has led to the discovery of many conditions in learning theory under which fast learning is possible. We show that most of these conditions are special cases of a single, unifying condition, that comes in two forms: the central condition for 'proper' learning algorithms that always output a hypothesis in the given model, and stochastic mixability for online algorithms that may make predictions outside of the model. We show that under surprisingly weak assumptions both conditions are, in a certain sense, equivalent. The central condition has a re-interpretation in terms of convexity of a set of pseudoprobabilities, linking it to density estimation under misspecification. For bounded losses, we show how the central condition enables a direct proof of fast rates and we prove its equivalence to the Bernstein condition, itself a generalization of the Tsybakov margin condition, both of which have played a central role in obtaining fast rates in statistical learning. Yet, while the Bernstein condition is two-sided, the central condition is one-sided, making it more suitable to deal with unbounded losses. In its stochastic mixability form, our condition generalizes both a stochastic exp-concavity condition identified by Juditsky, Rigollet and Tsybakov and Vovk's notion of mixability. Our unifying conditions thus provide a substantial step towards a characterization of fast rates in statistical learning, similar to how classical mixability characterizes constant regret in the sequential prediction with expert advice setting.