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 Learning Graphical Models


Impacts of Dirty Data: and Experimental Evaluation

arXiv.org Machine Learning

Data quality issues have attracted widespread attention due to the negative impacts of dirty data on data mining and machine learning results. The relationship between data quality and the accuracy of results could be applied on the selection of the appropriate algorithm with the consideration of data quality and the determination of the data share to clean. However, rare research has focused on exploring such relationship. Motivated by this, this paper conducts an experimental comparison for the effects of missing, inconsistent and conflicting data on classification, clustering, and regression algorithms. Based on the experimental findings, we provide guidelines for algorithm selection and data cleaning.


A particle-based variational approach to Bayesian Non-negative Matrix Factorization

arXiv.org Machine Learning

Bayesian Non-negative Matrix Factorization (NMF) is a promising approach for understanding uncertainty and structure in matrix data. However, a large volume of applied work optimizes traditional non-Bayesian NMF objectives that fail to provide a principled understanding of the non-identifiability inherent in NMF-- an issue ideally addressed by a Bayesian approach. Despite their suitability, current Bayesian NMF approaches have failed to gain popularity in an applied setting; they sacrifice flexibility in modeling for tractable computation, tend to get stuck in local modes, and require many thousands of samples for meaningful uncertainty estimates. We address these issues through a particle-based variational approach to Bayesian NMF that only requires the joint likelihood to be differentiable for tractability, uses a novel initialization technique to identify multiple modes in the posterior, and allows domain experts to inspect a `small' set of factorizations that faithfully represent the posterior. We introduce and employ a class of likelihood and prior distributions for NMF that formulate a Bayesian model using popular non-Bayesian NMF objectives. On several real datasets, we obtain better particle approximations to the Bayesian NMF posterior in less time than baselines and demonstrate the significant role that multimodality plays in NMF-related tasks.


Coordination via predictive assistants from a game-theoretic view

arXiv.org Machine Learning

We study machine learning-based assistants that support coordination between humans in congested facilities via congestion forecasts. In our theoretical analysis, we use game theory to study how an assistant's forecast that influences the outcome relates to Nash equilibria, and how they can be reached quickly in congestion game-like settings. Using information theory, we investigate approximations to given social choice functions under privacy constraints w.r.t. assistants. And we study dynamics and training for a specific exponential smoothing-based assistant via a linear dynamical systems and causal analysis. We report experiments conducted on a real congested cafeteria with about 400 daily customers where we evaluate this assistant and prediction baselines to gain further insight.


Large-Scale Model Selection with Misspecification

arXiv.org Machine Learning

Model selection is crucial to high-dimensional learning and inference for contemporary big data applications in pinpointing the best set of covariates among a sequence of candidate interpretable models. Most existing work assumes implicitly that the models are correctly specified or have fixed dimensionality. Yet both features of model misspecification and high dimensionality are prevalent in practice. In this paper, we exploit the framework of model selection principles in misspecified models originated in Lv and Liu (2014) and investigate the asymptotic expansion of Bayesian principle of model selection in the setting of high-dimensional misspecified models. With a natural choice of prior probabilities that encourages interpretability and incorporates Kullback-Leibler divergence, we suggest the high-dimensional generalized Bayesian information criterion with prior probability (HGBIC_p) for large-scale model selection with misspecification. Our new information criterion characterizes the impacts of both model misspecification and high dimensionality on model selection. We further establish the consistency of covariance contrast matrix estimation and the model selection consistency of HGBIC_p in ultra-high dimensions under some mild regularity conditions. The advantages of our new method are supported by numerical studies.


Introduction to Markov Chains

@machinelearnbot

Markov chains are a fairly common, and relatively simple, way to statistically model random processes. They have been used in many different domains, ranging from text generation to financial modeling. A popular example is r/SubredditSimulator, which uses Markov chains to automate the creation of content for an entire subreddit. Overall, Markov Chains are conceptually quite intuitive, and are very accessible in that they can be implemented without the use of any advanced statistical or mathematical concepts. They are a great way to start learning about probabilistic modeling and data science techniques.


Optimal Bipartite Network Clustering

arXiv.org Machine Learning

We consider the problem of bipartite community detection in networks, or more generally the network biclustering problem. We present a fast two-stage procedure based on spectral initialization followed by the application of a pseudo-likelihood classifier twice. Under mild regularity conditions, we establish the weak consistency of the procedure (i.e., the convergence of the misclassification rate to zero) under a general bipartite stochastic block model. We show that the procedure is optimal in the sense that it achieves the optimal convergence rate that is achievable by a biclustering oracle, adaptively over the whole class, up to constants. The optimal rate we obtain sharpens some of the existing results and generalizes others to a wide regime of average degree growth. As a special case, we recover the known exact recovery threshold in the $\log n$ regime of sparsity. To obtain the general consistency result, as part of the provable version of the algorithm, we introduce a sub-block partitioning scheme that is also computationally attractive, allowing for distributed implementation of the algorithm without sacrificing optimality. The provable version of the algorithm is derived from a general blueprint for pseudo-likelihood biclustering algorithms that employ simple EM type updates. We show the effectiveness of this general class by numerical simulations.


EEG machine learning with Higuchi fractal dimension and Sample Entropy as features for successful detection of depression

arXiv.org Machine Learning

Reliable diagnosis of depressive disorder is essential for both optimal treatment and prevention of fatal outcomes. In this study, we aimed to elucidate the effectiveness of two non-linear measures, Higuchi Fractal Dimension (HFD) and Sample Entropy (SampEn), in detecting depressive disorders when applied on EEG. HFD and SampEn of EEG signals were used as features for seven machine learning algorithms including Multilayer Perceptron, Logistic Regression, Support Vector Machines with the linear and polynomial kernel, Decision Tree, Random Forest, and Naive Bayes classifier, discriminating EEG between healthy control subjects and patients diagnosed with depression. We confirmed earlier observations that both non-linear measures can discriminate EEG signals of patients from healthy control subjects. The results suggest that good classification is possible even with a small number of principal components. Average accuracy among classifiers ranged from 90.24% to 97.56%. Among the two measures, SampEn had better performance. Using HFD and SampEn and a variety of machine learning techniques we can accurately discriminate patients diagnosed with depression vs controls which can serve as a highly sensitive, clinically relevant marker for the diagnosis of depressive disorders.


Deep Choice Model Using Pointer Networks for Airline Itinerary Prediction

arXiv.org Machine Learning

Travel providers such as airlines and on-line travel agents are becoming more and more interested in understanding how passengers choose among alternative itineraries when searching for flights. This knowledge helps them better display and adapt their offer, taking into account market conditions and customer needs. Some common applications are not only filtering and sorting alternatives, but also changing certain attributes in real-time (e.g., changing the price). In this paper, we concentrate with the problem of modeling air passenger choices of flight itineraries. This problem has historically been tackled using classical Discrete Choice Modelling techniques. Traditional statistical approaches, in particular the Multinomial Logit model (MNL), is widely used in industrial applications due to its simplicity and general good performance. However, MNL models present several shortcomings and assumptions that might not hold in real applications. To overcome these difficulties, we present a new choice model based on Pointer Networks. Given an input sequence, this type of deep neural architecture combines Recurrent Neural Networks with the Attention Mechanism to learn the conditional probability of an output whose values correspond to positions in an input sequence. Therefore, given a sequence of different alternatives presented to a customer, the model can learn to point to the one most likely to be chosen by the customer. The proposed method was evaluated on a real dataset that combines on-line user search logs and airline flight bookings. Experimental results show that the proposed model outperforms the traditional MNL model on several metrics.


Capturing Structure Implicitly from Time-Series having Limited Data

arXiv.org Machine Learning

Scientific fields such as insider-threat detection and highway-safety planning often lack sufficient amounts of time-series data to estimate statistical models for the purpose of scientific discovery. Moreover, the available limited data are quite noisy. This presents a major challenge when estimating time-series models that are robust to overfitting and have well-calibrated uncertainty estimates. Most of the current literature in these fields involve visualizing the time-series for noticeable structure and hard coding them into pre-specified parametric functions. This approach is associated with two limitations. First, given that such trends may not be easily noticeable in small data, it is difficult to explicitly incorporate expressive structure into the models during formulation. Second, it is difficult to know $\textit{a priori}$ the most appropriate functional form to use. To address these limitations, a nonparametric Bayesian approach was proposed to implicitly capture hidden structure from time series having limited data. The proposed model, a Gaussian process with a spectral mixture kernel, precludes the need to pre-specify a functional form and hard code trends, is robust to overfitting and has well-calibrated uncertainty estimates.


Development and analysis of a Bayesian water balance model for large lake systems

arXiv.org Machine Learning

Water balance models (WBMs) are often employed to understand regional hydrologic cycles over various time scales. Most WBMs, however, are physically-based, and few employ state-of-the-art statistical methods to reconcile independent input measurement uncertainty and bias. Further, few WBMs exist for large lakes, and most large lake WBMs perform additive accounting, with minimal consideration towards input data uncertainty. Here, we introduce a framework for improving a previously developed large lake statistical water balance model (L2SWBM). Focusing on the water balances of Lakes Superior and Michigan-Huron, we demonstrate our new analytical framework, identifying L2SWBMs from 26 alternatives that adequately close the water balance of the lakes with satisfactory computation times compared with the prototype model. We expect our new framework will be used to develop water balance models for other lakes around the world.