When software developers modify one or more files in a large code base, they must also identify and update other related files. Many file dependencies can be detected by mining the development history of the code base: in essence, groups of related files are revealed by the logs of previous workflows. From data of this form, we show how to detect dependent files by solving a problem in binary matrix completion. We explore different latent variable models (LVMs) for this problem, including Bernoulli mixture models, exponential family PCA, restricted Boltzmann machines, and fully Bayesian approaches. We evaluate these models on the development histories of three large, open-source software systems: Mozilla Firefox, Eclipse Subversive, and Gimp.

Schizophrenia is a complex psychiatric disorder that has eluded a characterization in terms of local abnormalities of brain activity, and is hypothesized to affect the collective, emergent working of the brain. We propose a novel data-driven approach to capture emergent features using functional brain networks [Eguiluzet al] extracted from fMRI data, and demonstrate its advantage over traditional region-of-interest (ROI) and local, task-specific linear activation analyzes. Our results suggest that schizophrenia is indeed associated with disruption of global, emergent brain properties related to its functioning as a network, which cannot be explained by alteration of local activation patterns. Moreover, further exploitation of interactions by sparse Markov Random Field classifiers shows clear gain over linear methods, such as Gaussian Naive Bayes and SVM, allowing to reach 86% accuracy (over 50% baseline - random guess), which is quite remarkable given that it is based on a single fMRI experiment using a simple auditory task. Papers published at the Neural Information Processing Systems Conference.

Over recent years Dirichlet processes and the associated Chinese restaurant process (CRP) have found many applications in clustering while the Indian buffet process (IBP) is increasingly used to describe latent feature models. In the clustering case, we associate to each data point a latent allocation variable. These latent variables can share the same value and this induces a partition of the data set. The CRP is a prior distribution on such partitions. In latent feature models, we associate to each data point a potentially infinite number of binary latent variables indicating the possession of some features and the IBP is a prior distribution on the associated infinite binary matrix.

A fundamental objective in reinforcement learning is the maintenance of a proper balance between exploration and exploitation. This problem becomes more challenging when the agent can only partially observe the states of its environment. In this paper we propose a dual-policy method for jointly learning the agent behavior and the balance between exploration exploitation, in partially observable environments. The method subsumes traditional exploration, in which the agent takes actions to gather information about the environment, and active learning, in which the agent queries an oracle for optimal actions (with an associated cost for employing the oracle). The form of the employed exploration is dictated by the specific problem.

We present a novel method for inducing synchronous context free grammars (SCFGs) from a corpus of parallel string pairs. SCFGs can model equivalence between strings in terms of substitutions, insertions and deletions, and the reordering of sub-strings. We develop a non-parametric Bayesian model and apply it to a machine translation task, using priors to replace the various heuristics commonly used in this field. Using a variational Bayes training procedure, we learn the latent structure of translation equivalence through the induction of synchronous grammar categories for phrasal translations, showing improvements in translation performance over previously proposed maximum likelihood models. Papers published at the Neural Information Processing Systems Conference.

We present a sequence of unsupervised, nonparametric Bayesian models for clustering complex linguistic objects. In this approach, we consider a potentially infinite number of features and categorical outcomes. We evaluate these models for the task of within- and cross-document event coreference on two corpora. All the models we investigated show significant improvements when compared against an existing baseline for this task. Papers published at the Neural Information Processing Systems Conference.

We tackle the fundamental problem of Bayesian active learning with noise, where we need to adaptively select from a number of expensive tests in order to identify an unknown hypothesis sampled from a known prior distribution. In the case of noise-free observations, a greedy algorithm called generalized binary search (GBS) is known to perform near-optimally. We show that if the observations are noisy, perhaps surprisingly, GBS can perform very poorly. We develop EC2, a novel, greedy active learning algorithm and prove that it is competitive with the optimal policy, thus obtaining the first competitiveness guarantees for Bayesian active learning with noisy observations. Our bounds rely on a recently discovered diminishing returns property called adaptive submodularity, generalizing the classical notion of submodular set functions to adaptive policies.

We present a system which constructs a topological map of an environment given a sequence of images. This system includes a novel image similarity score which uses dynamic programming to match images using both the appearance and relative positions of local features simultaneously. Additionally an MRF is constructed to model the probability of loop-closures. A locally optimal labeling is found using Loopy-BP. Finally we outline a method to generate a topological map from loop closure data.

We present an algorithm for learning high-treewidth Markov networks where inference is still tractable. This is made possible by exploiting context specific independence and determinism in the domain. The class of models our algorithm can learn has the same desirable properties as thin junction trees: polynomial inference, closed form weight learning, etc., but is much broader. Our algorithm searches for a feature that divides the state space into subspaces where the remaining variables decompose into independent subsets (conditioned on the feature or its negation) and recurses on each subspace/subset of variables until no useful new features can be found. We provide probabilistic performance guarantees for our algorithm under the assumption that the maximum feature length is k (the treewidth can be much larger) and dependences are of bounded strength.

We use graphical models and structure learning to explore how people learn policies in sequential decision making tasks. Studies of sequential decision-making in humans frequently find suboptimal performance relative to an ideal actor that knows the graph model that generates reward in the environment. We argue that the learning problem humans face also involves learning the graph structure for reward generation in the environment. We formulate the structure learning problem using mixtures of reward models, and solve the optimal action selection problem using Bayesian Reinforcement Learning. We show that structure learning in one and two armed bandit problems produces many of the qualitative behaviors deemed suboptimal in previous studies.