Learning Graphical Models
Dual-track Music Generation using Deep Learning
Lyu, Sudi, Zhang, Anxiang, Song, Rong
Music generation is always interesting in a sense that there is no formalized recipe. In this work, we propose a novel dual-track architecture for generating classical piano music, which is able to model the inter-dependency of left-hand and right-hand piano music. Particularly, we experimented with a lot of different models of neural network as well as different representations of music, and the results show that our proposed model outperforms all other tested methods. Besides, we deployed some special policies for model training and generation, which contributed to the model performance remarkably. Finally, under two evaluation methods, we compared our models with the MuseGAN project and true music.
Exact Asymptotics for Learning Tree-Structured Graphical Models with Side Information: Noiseless and Noisy Samples
Tandon, Anshoo, Tan, Vincent Y. F., Zhu, Shiyao
Given side information that an Ising tree-structured graphical model is homogeneous and has no external field, we derive the exact asymptotics of learning its structure from independently drawn samples. Our results, which leverage the use of probabilistic tools from the theory of strong large deviations, refine the large deviation (error exponents) results of Tan, Anandkumar, Tong, and Willsky [IEEE Trans. In addition, we extend our results to the scenario in which the samples are observed in random noise. In this case, we show that they strictly improve on the recent results of Nikolakakis, Kalogerias, and Sarwate [Proc. Our theoretical results demonstrate keen agreement with experimental results for sample sizes as small as that in the hundreds. The learning of graphical models [1] from data samples is an important and fundamental task in statistical inference and learning.
The scalable Birth-Death MCMC Algorithm for Mixed Graphical Model Learning with Application to Genomic Data Integration
Wang, Nanwei, Briollais, Laurent, Massam, Helene
Recent advances in biological research have seen the emergence of high-throughput technologies with numerous applications that allow the study of biological mechanisms at an unprecedented depth and scale. A large amount of genomic data is now distributed through consortia like The Cancer Genome Atlas (TCGA), where specific types of biological information on specific type of tissue or cell are available. In cancer research, the challenge is now to perform integrative analyses of high-dimensional multi-omic data with the goal to better understand genomic processes that correlate with cancer outcomes, e.g. elucidate gene networks that discriminate a specific cancer subgroups (cancer sub-typing) or discovering gene networks that overlap across different cancer types (pan-cancer studies). In this paper, we propose a novel mixed graphical model approach to analyze multi-omic data of different types (continuous, discrete and count) and perform model selection by extending the Birth-Death MCMC (BDMCMC) algorithm initially proposed by \citet{stephens2000bayesian} and later developed by \cite{mohammadi2015bayesian}. We compare the performance of our method to the LASSO method and the standard BDMCMC method using simulations and find that our method is superior in terms of both computational efficiency and the accuracy of the model selection results. Finally, an application to the TCGA breast cancer data shows that integrating genomic information at different levels (mutation and expression data) leads to better subtyping of breast cancers.
Compressing Large Sample Data for Discriminant Analysis
Lapanowski, Alexander F., Gaynanova, Irina
Large-sample data became prevalent as data acquisition became cheaper and easier. While a large sample size has theoretical advantages for many statistical methods, it presents computational challenges. Sketching, or compression, is a well-studied approach to address these issues in regression settings, but considerably less is known about its performance in classification settings. Here we consider the computational issues due to large sample size within the discriminant analysis framework. We propose a new compression approach for reducing the number of training samples for linear and quadratic discriminant analysis, in contrast to existing compression methods which focus on reducing the number of features. We support our approach with a theoretical bound on the misclassification error rate compared to the Bayes classifier. Empirical studies confirm the significant computational gains of the proposed method and its superior predictive ability compared to random sub-sampling.
Efficient Computation Reduction in Bayesian Neural Networks Through Feature Decomposition and Memorization
Jia, Xiaotao, Yang, Jianlei, Liu, Runze, Wang, Xueyan, Cotofana, Sorin Dan, Zhao, Weisheng
Bayesian method is capable of capturing real world uncertainties/incompleteness and properly addressing the over-fitting issue faced by deep neural networks. In recent years, Bayesian Neural Networks (BNNs) have drawn tremendous attentions of AI researchers and proved to be successful in many applications. However, the required high computation complexity makes BNNs difficult to be deployed in computing systems with limited power budget. In this paper, an efficient BNN inference flow is proposed to reduce the computation cost then is evaluated by means of both software and hardware implementations. A feature decomposition and memorization (\texttt{DM}) strategy is utilized to reform the BNN inference flow in a reduced manner. About half of the computations could be eliminated compared to the traditional approach that has been proved by theoretical analysis and software validations. Subsequently, in order to resolve the hardware resource limitations, a memory-friendly computing framework is further deployed to reduce the memory overhead introduced by \texttt{DM} strategy. Finally, we implement our approach in Verilog and synthesise it with 45 $nm$ FreePDK technology. Hardware simulation results on multi-layer BNNs demonstrate that, when compared with the traditional BNN inference method, it provides an energy consumption reduction of 73\% and a 4$\times$ speedup at the expense of 14\% area overhead.
Synthesizing Safe Policies under Probabilistic Constraints with Reinforcement Learning and Bayesian Model Checking
Belzner, Lenz, Wirsing, Martin
In this paper we propose Policy Synthesis under probabilistic Constraints (PSyCo), a systematic engineering method for synthesizing safe policies under probabilistic constraints with reinforcement learning and Bayesian model checking. As an implementation of PSyCo we introduce Safe Neural Evolutionary Strategies (SNES). SNES leverages Bayesian model checking while learning to adjust the Lagrangian of a constrained optimization problem derived from a PSyCo specification. We empirically evaluate SNES' ability to synthesize feasible policies in settings with formal safety requirements.
Training and Classification using a Restricted Boltzmann Machine on the D-Wave 2000Q
Dixit, Vivek, Selvarajan, Raja, Alam, Muhammad A., Humble, Travis S., Kais, Sabre
Restricted Boltzmann Machine (RBM) is an energy based, undirected graphical model. It is commonly used for unsupervised and supervised machine learning. Typically, RBM is trained using contrastive divergence (CD). However, training with CD is slow and does not estimate exact gradient of log-likelihood cost function. In this work, the model expectation of gradient learning for RBM has been calculated using a quantum annealer (D-Wave 2000Q), which is much faster than Markov chain Monte Carlo (MCMC) used in CD. Training and classification results are compared with CD. The classification accuracy results indicate similar performance of both methods. Image reconstruction as well as log-likelihood calculations are used to compare the performance of quantum and classical algorithms for RBM training. It is shown that the samples obtained from quantum annealer can be used to train a RBM on a 64-bit `bars and stripes' data set with classification performance similar to a RBM trained with CD. Though training based on CD showed improved learning performance, training using a quantum annealer eliminates computationally expensive MCMC steps of CD.
Efficient Reconstruction of Stochastic Pedigrees
Kim, Younhun, Mossel, Elchanan, Ramnarayan, Govind, Turner, Paxton
We introduce a new algorithm called {\sc Rec-Gen} for reconstructing the genealogy or \textit{pedigree} of an extant population purely from its genetic data. We justify our approach by giving a mathematical proof of the effectiveness of {\sc Rec-Gen} when applied to pedigrees from an idealized generative model that replicates some of the features of real-world pedigrees. Our algorithm is iterative and provides an accurate reconstruction of a large fraction of the pedigree while having relatively low \emph{sample complexity}, measured in terms of the length of the genetic sequences of the population. We propose our approach as a prototype for further investigation of the pedigree reconstruction problem toward the goal of applications to real-world examples. As such, our results have some conceptual bearing on the increasingly important issue of genomic privacy.
Inference, Prediction, and Entropy-Rate Estimation of Continuous-time, Discrete-event Processes
Marzen, S. E., Crutchfield, J. P.
Inferring models, predicting the future, and estimating the entropy rate of discrete-time, discrete-event processes is well-worn ground. However, a much broader class of discrete-event processes operates in continuous-time. Here, we provide new methods for inferring, predicting, and estimating them. The methods rely on an extension of Bayesian structural inference that takes advantage of neural network's universal approximation power. Based on experiments with complex synthetic data, the methods are competitive with the state-of-the-art for prediction and entropy-rate estimation.
A Gradient-Aware Search Algorithm for Constrained Markov Decision Processes
Khairy, Sami, Balaprakash, Prasanna, Cai, Lin X.
The canonical solution methodology for finite constrained Markov decision processes (CMDPs), where the objective is to maximize the expected infinite-horizon discounted rewards subject to the expected infinite-horizon discounted costs constraints, is based on convex linear programming. In this brief, we first prove that the optimization objective in the dual linear program of a finite CMDP is a piece-wise linear convex function (PWLC) with respect to the Lagrange penalty multipliers. Next, we propose a novel two-level Gradient-Aware Search (GAS) algorithm which exploits the PWLC structure to find the optimal state-value function and Lagrange penalty multipliers of a finite CMDP. The proposed algorithm is applied in two stochastic control problems with constraints: robot navigation in a grid world and solar-powered unmanned aerial vehicle (UAV)-based wireless network management. We empirically compare the convergence performance of the proposed GAS algorithm with binary search (BS), Lagrangian primal-dual optimization (PDO), and Linear Programming (LP). Compared with benchmark algorithms, it is shown that the proposed GAS algorithm converges to the optimal solution faster, does not require hyper-parameter tuning, and is not sensitive to initialization of the Lagrange penalty multiplier.