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 Learning Graphical Models


Robust Inference of Dynamic Covariance Using Wishart Processes and Sequential Monte Carlo

arXiv.org Machine Learning

A Bayesian nonparametric model known as the Wishart process has been shown to be effective in this situation, but its inference remains highly challenging. In this work, we introduce a Sequential Monte Carlo (SMC) sampler for the Wishart process, and show how it compares to conventional inference approaches, namely MCMC and variational inference. Using simulations we show that SMC sampling results in the most robust estimates and out-of-sample predictions of dynamic covariance. SMC especially outperforms the alternative approaches when using composite covariance functions with correlated parameters. We demonstrate the practical applicability of our proposed approach on a dataset of clinical depression (n = 1), and show how using an accurate representation of the posterior distribution can be used to test for dynamics on covariance.


Selecting the Number of Communities for Weighted Degree-Corrected Stochastic Block Models

arXiv.org Machine Learning

We investigate how to select the number of communities for weighted networks without a full likelihood modeling. First, we propose a novel weighted degree-corrected stochastic block model (DCSBM), in which the mean adjacency matrix is modeled as the same as in standard DCSBM, while the variance profile matrix is assumed to be related to the mean adjacency matrix through a given variance function. Our method of selection the number of communities is based on a sequential testing framework, in each step the weighed DCSBM is fitted via some spectral clustering method. A key step is to carry out matrix scaling on the estimated variance profile matrix. The resulting scaling factors can be used to normalize the adjacency matrix, from which the testing statistic is obtained. Under mild conditions on the weighted DCSBM, our proposed procedure is shown to be consistent in estimating the true number of communities. Numerical experiments on both simulated and real network data also demonstrate the desirable empirical properties of our method.


Variational Flow Matching for Graph Generation

arXiv.org Machine Learning

We present a formulation of flow matching as variational inference, which we refer to as variational flow matching (VFM). Based on this formulation we develop CatFlow, a flow matching method for categorical data. CatFlow is easy to implement, computationally efficient, and achieves strong results on graph generation tasks. In VFM, the objective is to approximate the posterior probability path, which is a distribution over possible end points of a trajectory. We show that VFM admits both the CatFlow objective and the original flow matching objective as special cases. We also relate VFM to score-based models, in which the dynamics are stochastic rather than deterministic, and derive a bound on the model likelihood based on a reweighted VFM objective. We evaluate CatFlow on one abstract graph generation task and two molecular generation tasks. In all cases, CatFlow exceeds or matches performance of the current state-of-the-art models.


Reinforcement Learning and Regret Bounds for Admission Control

arXiv.org Machine Learning

The expected regret of any reinforcement learning algorithm is lower bounded by $\Omega\left(\sqrt{DXAT}\right)$ for undiscounted returns, where $D$ is the diameter of the Markov decision process, $X$ the size of the state space, $A$ the size of the action space and $T$ the number of time steps. However, this lower bound is general. A smaller regret can be obtained by taking into account some specific knowledge of the problem structure. In this article, we consider an admission control problem to an $M/M/c/S$ queue with $m$ job classes and class-dependent rewards and holding costs. Queuing systems often have a diameter that is exponential in the buffer size $S$, making the previous lower bound prohibitive for any practical use. We propose an algorithm inspired by UCRL2, and use the structure of the problem to upper bound the expected total regret by $O(S\log T + \sqrt{mT \log T})$ in the finite server case. In the infinite server case, we prove that the dependence of the regret on $S$ disappears.


Generative modeling of density regression through tree flows

arXiv.org Machine Learning

A common objective in the analysis of tabular data is estimating the conditional distribution (in contrast to only producing predictions) of a set of "outcome" variables given a set of "covariates", which is sometimes referred to as the "density regression" problem. Beyond estimation on the conditional distribution, the generative ability of drawing synthetic samples from the learned conditional distribution is also desired as it further widens the range of applications. We propose a flow-based generative model tailored for the density regression task on tabular data. Our flow applies a sequence of tree-based piecewise-linear transforms on initial uniform noise to eventually generate samples from complex conditional densities of (univariate or multivariate) outcomes given the covariates and allows efficient analytical evaluation of the fitted conditional density on any point in the sample space. We introduce a training algorithm for fitting the tree-based transforms using a divide-and-conquer strategy that transforms maximum likelihood training of the tree-flow into training a collection of binary classifiers--one at each tree split--under cross-entropy loss. We assess the performance of our method under out-of-sample likelihood evaluation and compare it with a variety of state-of-the-art conditional density learners on a range of simulated and real benchmark tabular datasets. Our method consistently achieves comparable or superior performance at a fraction of the training and sampling budget. Finally, we demonstrate the utility of our method's generative ability through an application to generating synthetic longitudinal microbiome compositional data based on training our flow on a publicly available microbiome study.


Dynamical mixture modeling with fast, automatic determination of Markov chains

arXiv.org Machine Learning

Markov state modeling has gained popularity in various scientific fields due to its ability to reduce complex time series data into transitions between a few states. Yet, current frameworks are limited by assuming a single Markov chain describes the data, and they suffer an inability to discern heterogeneities. As a solution, this paper proposes a variational expectation-maximization algorithm that identifies a mixture of Markov chains in a time-series data set. The method is agnostic to the definition of the Markov states, whether data-driven (e.g. by spectral clustering) or based on domain knowledge. Variational EM efficiently and organically identifies the number of Markov chains and dynamics of each chain without expensive model comparisons or posterior sampling. The approach is supported by a theoretical analysis and numerical experiments, including simulated and observational data sets based on ${\tt Last.fm}$ music listening, ultramarathon running, and gene expression. The results show the new algorithm is competitive with contemporary mixture modeling approaches and powerful in identifying meaningful heterogeneities in time series data.


Enhancing Sign Language Detection through Mediapipe and Convolutional Neural Networks (CNN)

arXiv.org Artificial Intelligence

This research combines MediaPipe and CNNs for the efficient and accurate interpretation of ASL dataset for the real-time detection of sign language. The system presented here captures and processes hands' gestures in real time. the intended purpose was to create a very easy, accurate, and fast way of entering commands without the necessity of touching something.MediaPipe supports one of the powerful frameworks in real-time hand tracking capabilities for the ability to capture and preprocess hand movements, which increases the accuracy of the gesture recognition system. Actually, the integration of CNN with the MediaPipe results in higher efficiency in using the model of real-time processing.The accuracy achieved by the model on ASL datasets is 99.12\%.The model was tested using American Sign Language (ASL) datasets. The results were then compared to those of existing methods to evaluate how well it performed, using established evaluation techniques. The system will have applications in the communication, education, and accessibility domains. Making systems such as described in this paper even better will assist people with hearing impairment and make things accessible to them. We tested the recognition and translation performance on an ASL dataset and achieved better accuracy over previous models.It is meant to the research is to identify the characters that American signs recognize using hand images taken from a web camera by based on mediapipe and CNNs


REPLAY: Modeling Time-Varying Temporal Regularities of Human Mobility for Location Prediction over Sparse Trajectories

arXiv.org Artificial Intelligence

Location prediction forecasts a user's location based on historical user mobility traces. To tackle the intrinsic sparsity issue of real-world user mobility traces, spatiotemporal contexts have been shown as significantly useful. Existing solutions mostly incorporate spatiotemporal distances between locations in mobility traces, either by feeding them as additional inputs to Recurrent Neural Networks (RNNs) or by using them to search for informative past hidden states for prediction. However, such distance-based methods fail to capture the time-varying temporal regularities of human mobility, where human mobility is often more regular in the morning than in other periods, for example; this suggests the usefulness of the actual timestamps besides the temporal distances. Against this background, we propose REPLAY, a general RNN architecture learning to capture the time-varying temporal regularities for location prediction. Specifically, REPLAY not only resorts to the spatiotemporal distances in sparse trajectories to search for the informative past hidden states, but also accommodates the time-varying temporal regularities by incorporating smoothed timestamp embeddings using Gaussian weighted averaging with timestamp-specific learnable bandwidths, which can flexibly adapt to the temporal regularities of different strengths across different timestamps. Our extensive evaluation compares REPLAY against a sizable collection of state-of-the-art techniques on two real-world datasets. Results show that REPLAY consistently and significantly outperforms state-of-the-art methods by 7.7\%-10.9\% in the location prediction task, and the bandwidths reveal interesting patterns of the time-varying temporal regularities.


On the Hardness of Probabilistic Neurosymbolic Learning

arXiv.org Artificial Intelligence

The limitations of purely neural learning have sparked an interest in probabilistic neurosymbolic models, which combine neural networks with probabilistic logical reasoning. As these neurosymbolic models are trained with gradient descent, we study the complexity of differentiating probabilistic reasoning. We prove that although approximating these gradients is intractable in general, it becomes tractable during training. Furthermore, we introduce WeightME, an unbiased gradient estimator based on model sampling. Under mild assumptions, WeightME approximates the gradient with probabilistic guarantees using a logarithmic number of calls to a SAT solver. Lastly, we evaluate the necessity of these guarantees on the gradient. Our experiments indicate that the existing biased approximations indeed struggle to optimize even when exact solving is still feasible.


A novel robust meta-analysis model using the $t$ distribution for outlier accommodation and detection

arXiv.org Machine Learning

Random effects meta-analysis model is an important tool for integrating results from multiple independent studies. However, the standard model is based on the assumption of normal distributions for both random effects and within-study errors, making it susceptible to outlying studies. Although robust modeling using the $t$ distribution is an appealing idea, the existing work, that explores the use of the $t$ distribution only for random effects, involves complicated numerical integration and numerical optimization. In this paper, a novel robust meta-analysis model using the $t$ distribution is proposed ($t$Meta). The novelty is that the marginal distribution of the effect size in $t$Meta follows the $t$ distribution, enabling that $t$Meta can simultaneously accommodate and detect outlying studies in a simple and adaptive manner. A simple and fast EM-type algorithm is developed for maximum likelihood estimation. Due to the mathematical tractability of the $t$ distribution, $t$Meta frees from numerical integration and allows for efficient optimization. Experiments on real data demonstrate that $t$Meta is compared favorably with related competitors in situations involving mild outliers. Moreover, in the presence of gross outliers, while related competitors may fail, $t$Meta continues to perform consistently and robustly.