We consider the problem of learning rules from natural language text sources. These sources, such as news articles and web texts, are created by a writer to communicate information to a reader, where the writer and reader share substantial domain knowledge. Consequently, the texts tend to be concise and mention the minimum information necessary for the reader to draw the correct conclusions. We study the problem of learning domain knowledge from such concise texts, which is an instance of the general problem of learning in the presence of missing data. However, unlike standard approaches to missing data, in this setting we know that facts are more likely to be missing from the text in cases where the reader can infer them from the facts that are mentioned combined with the domain knowledge. Hence, we can explicitly model this "missingness" process and invert it via probabilistic inference to learn the underlying domain knowledge. This paper introduces a mention model that models the probability of facts being mentioned in the text based on what other facts have already been mentioned and domain knowledge in the form of Horn clause rules. Learning must simultaneously search the space of rules and learn the parameters of the mention model. We accomplish this via an application of Expectation Maximization within a Markov Logic framework. An experimental evaluation on synthetic and natural text data shows that the method can learn accurate rules and apply them to new texts to make correct inferences. Experiments also show that the method out-performs the standard EM approach that assumes mentions are missing at random.

The performance of Markov chain Monte Carlo methods is often sensitive to the scaling and correlations between the random variables of interest. An important source of information about the local correlation and scale is given by the Hessian matrix of the target distribution, but this is often either computationally expensive or infeasible. In this paper we propose MCMC samplers that make use of quasi-Newton approximations from the optimization literature, that approximate the Hessian of the target distribution from previous samples and gradients generated by the sampler. A key issue is that MCMC samplers that depend on the history of previous states are in general not valid. We address this problem by using limited memory quasi-Newton methods, which depend only on a fixed window of previous samples. On several real world datasets, we show that the quasi-Newton sampler is a more effective sampler than standard Hamiltonian Monte Carlo at a fraction of the cost of MCMC methods that require higher-order derivatives.

Focusing on short term trend prediction in a financial context, we consider the problem of selective prediction whereby the predictor can abstain from prediction in order to improve performance. We examine two types of selective mechanisms for HMM predictors. The first is a rejection in the spirit of Chow’s well-known ambiguity principle. The second is a specialized mechanism for HMMs that identifies low quality HMM states and abstain from prediction in those states. We call this model selective HMM (sHMM). In both approaches we can trade-off prediction coverage to gain better accuracy in a controlled manner. We compare performance of the ambiguity-based rejection technique with that of the sHMM approach. Our results indicate that both methods are effective, and that the sHMM model is superior.

We present explicit classes of probability distributions that can be learned by Restricted Boltzmann Machines (RBMs) depending on the number of units that they contain, and which are representative for the expressive power of the model. We use this to show that the maximal Kullback-Leibler divergence to the RBM model with n visible and m hidden units is bounded from above by (n-1)-log(m+1). In this way we can specify the number of hidden units that guarantees a sufficiently rich model containing different classes of distributions and respecting a given error tolerance.

Budgeted optimization involves optimizing an unknown function that is costly to evaluate by requesting a limited number of function evaluations at intelligently selected inputs. Typical problem formulations assume that experiments are selected one at a time with a limited total number of experiments, which fail to capture important aspects of many real-world problems. This paper defines a novel problem formulation with the following important extensions: 1) allowing for concurrent experiments; 2) allowing for stochastic experiment durations; and 3) placing constraints on both the total number of experiments and the total experimental time. We develop both offline and online algorithms for selecting concurrent experiments in this new setting and provide experimental results on a number of optimization benchmarks. The results show that our algorithms produce highly effective schedules compared to natural baselines.

We propose a novel class of Bayesian nonparametric models for sequential data called fragmentation-coagulation processes (FCPs). FCPs model a set of sequences using a partition-valued Markov process which evolves by splitting and merging clusters. An FCP is exchangeable, projective, stationary and reversible, and its equilibrium distributions are given by the Chinese restaurant process. As opposed to hidden Markov models, FCPs allow for flexible modelling of the number of clusters, and they avoid label switching non-identifiability problems. We develop an efficient Gibbs sampler for FCPs which uses uniformization and the forward-backward algorithm. Our development of FCPs is motivated by applications in population genetics, and we demonstrate the utility of FCPs on problems of genotype imputation with phased and unphased SNP data.

Applications such as robot control and wireless communication require planning under uncertainty. Partially observable Markov decision processes (POMDPs) plan policies for single agents under uncertainty and their decentralized versions (DEC-POMDPs) find a policy for multiple agents. The policy in infinite-horizon POMDP and DEC-POMDP problems has been represented as finite state controllers (FSCs). We introduce a novel class of periodic FSCs, composed of layers connected only to the previous and next layer. Our periodic FSC method finds a deterministic finite-horizon policy and converts it to an initial periodic infinite-horizon policy. This policy is optimized by a new infinite-horizon algorithm to yield deterministic periodic policies, and by a new expectation maximization algorithm to yield stochastic periodic policies. Our method yields better results than earlier planning methods and can compute larger solutions than with regular FSCs.

Kernel-based reinforcement-learning (KBRL) is a method for learning a decision policy from a set of sample transitions which stands out for its strong theoretical guarantees. However, the size of the approximator grows with the number of transitions, which makes the approach impractical for large problems. In this paper we introduce a novel algorithm to improve the scalability of KBRL. We resort to a special decomposition of a transition matrix, called stochastic factorization, to fix the size of the approximator while at the same time incorporating all the information contained in the data. The resulting algorithm, kernel-based stochastic factorization (KBSF), is much faster but still converges to a unique solution. We derive a theoretical upper bound for the distance between the value functions computed by KBRL and KBSF. The effectiveness of our method is illustrated with computational experiments on four reinforcement-learning problems, including a difficult task in which the goal is to learn a neurostimulation policy to suppress the occurrence of seizures in epileptic rat brains. We empirically demonstrate that the proposed approach is able to compress the information contained in KBRL's model. Also, on the tasks studied, KBSF outperforms two of the most prominent reinforcement-learning algorithms, namely least-squares policy iteration and fitted Q-iteration.

Nonparametric Bayesian methods are developed for analysis of multi-channel spike-train data, with the feature learning and spike sorting performed jointly. The feature learning and sorting are performed simultaneously across all channels. Dictionary learning is implemented via the beta-Bernoulli process, with spike sorting performed via the dynamic hierarchical Dirichlet process (dHDP), with these two models coupled. The dHDP is augmented to eliminate refractory-period violations, it allows the "appearance" and "disappearance" of neurons over time, and it models smooth variation in the spike statistics.

We introduce the Gamma-Exponential Process (GEP), a prior over a large family ofcontinuous time stochastic processes. A hierarchical version of this prior (HGEP; the Hierarchical GEP) yields a useful model for analyzing complex time series. Models based on HGEPs display many attractive properties: conjugacy, exchangeability and closed-form predictive distribution for the waiting times, and exact Gibbs updates for the time scale parameters. After establishing these properties, weshow how posterior inference can be carried efficiently using Particle MCMC methods [1]. This yields a MCMC algorithm that can resample entire sequences atomicallywhile avoiding the complications of introducing slice and stick auxiliary variables of the beam sampler [2]. We applied our model to the problem of estimating the disease progression in multiple sclerosis [3], and to RNA evolutionary modeling[4]. In both domains, we found that our model outperformed the standard rate matrix estimation approach.