In this paper we present a novel approach to learn directed acyclic graphs (DAG) and factor models within the same framework while also allowing for model comparison between them. For this purpose, we exploit the connection between factor models and DAGs to propose Bayesian hierarchies based on spike and slab priors to promote sparsity, heavy-tailed priors to ensure identifiability and predictive densities to perform the model comparison. We require identifiability to be able to produce variable orderings leading to valid DAGs and sparsity to learn the structures. The effectiveness of our approach is demonstrated through extensive experiments on artificial and biological data showing that our approach outperform a number of state of the art methods.

Existing models of categorization typically represent to-be-classified items as points in a multidimensional space. While from a mathematical point of view, an infinite number of basis sets can be used to represent points in this space, the choice of basis set is psychologically crucial. People generally choose the same basis dimensions, and have a strong preference to generalize along the axes of these dimensions, but not diagonally". What makes some choices of dimension special? We explore the idea that the dimensions used by people echo the natural variation in the environment. Specifically, we present a rational model that does not assume dimensions, but learns the same type of dimensional generalizations that people display. This bias is shaped by exposing the model to many categories with a structure hypothesized to be like those which children encounter. Our model can be viewed as a type of transformed Dirichlet process mixture model, where it is the learning of the base distribution of the Dirichlet process which allows dimensional generalization.The learning behaviour of our model captures the developmental shift from roughly "isotropic" for children to the axis-aligned generalization that adults show."

Dynamic Bayesian networks have been applied widely to reconstruct the structure of regulatory processes from time series data. The standard approach is based on the assumption of a homogeneous Markov chain, which is not valid in many real-world scenarios. Recent research efforts addressing this shortcoming have considered undirected graphs, directed graphs for discretized data, or over-flexible models that lack any information sharing between time series segments. In the present article, we propose a non-stationary dynamic Bayesian network for continuous data, in which parameters are allowed to vary between segments, and in which a common network structure provides essential information sharing across segments. Our model is based on a Bayesian change-point process, and we apply a variant of the allocation sampler of Nobile and Fearnside to infer the number and location of the change-points.

In this paper we explore the problem of biasing unsupervised models to favor sparsity. We extend the posterior regularization framework [8] to encourage the model to achieve posterior sparsity on the unlabeled training data. We apply this new method to learn first-order HMMs for unsupervised part-of-speech (POS) tagging, and show that HMMs learned this way consistently and significantly out-performs both EM-trained HMMs, and HMMs with a sparsity-inducing Dirichlet prior trained by variational EM. We evaluate these HMMs on three languages — English, Bulgarian and Portuguese — under four conditions. We find that our method always improves performance with respect to both baselines, while variational Bayes actually degrades performance in most cases. We increase accuracy with respect to EM by 2.5%-8.7% absolute and we see improvements even in a semisupervised condition where a limited dictionary is provided.

Little work has been done to directly combine the outputs of multiple supervised and unsupervised models. However, it can increase the accuracy and applicability of ensemble methods. First, we can boost the diversity of classification ensemble by incorporating multiple clustering outputs, each of which provides grouping constraints for the joint label predictions of a set of related objects. Secondly, ensemble of supervised models is limited in applications which have no access to raw data but to the meta-level model outputs. In this paper, we aim at calculating a consolidated classification solution for a set of objects by maximizing the consensus among both supervised predictions and unsupervised grouping constraints. We seek a global optimal label assignment for the target objects, which is different from the result of traditional majority voting and model combination approaches. We cast the problem into an optimization problem on a bipartite graph, where the objective function favors smoothness in the conditional probability estimates over the graph, as well as penalizes deviation from initial labeling of supervised models. We solve the problem through iterative propagation of conditional probability estimates among neighboring nodes, and interpret the method as conducting a constrained embedding in a transformed space, as well as a ranking on the graph. Experimental results on three real applications demonstrate the benefits of the proposed method over existing alternatives.

A non-parametric Bayesian model is proposed for processing multiple images. The analysis employs image features and, when present, the words associated with accompanying annotations. The model clusters the images into classes, and each image is segmented into a set of objects, also allowing the opportunity to assign a word to each object (localized labeling). Each object is assumed to be represented as a heterogeneous mix of components, with this realized via mixture models linking image features to object types. The number of image classes, number of object types, and the characteristics of the object-feature mixture models are inferred non-parametrically. To constitute spatially contiguous objects, a new logistic stick-breaking process is developed. Inference is performed efficiently via variational Bayesian analysis, with example results presented on two image databases.

We devise a graphical model that supports the process of debugging software by guiding developers to code that is likely to contain defects. The model is trained using execution traces of passing test runs; it reflects the distribution over transitional patterns of code positions. Given a failing test case, the model determines the least likely transitional pattern in the execution trace. The model is designed such that Bayesian inference has a closed-form solution. We evaluate the Bernoulli graph model on data of the software projects AspectJ and Rhino.

The Indian Buffet Process is a Bayesian nonparametric approach that models objects as arising from an infinite number of latent factors. Here we extend the latent factor model framework to two or more unbounded layers of latent factors. From a generative perspective, each layer defines a conditional \emph{factorial} prior distribution over the binary latent variables of the layer below via a noisy-or mechanism. We explore the properties of the model with two empirical studies, one digit recognition task and one music tag data experiment.

A central hypothesis about early visual processing is that it represents inputs in a coordinate system matched to the statistics of natural scenes. Simple versions of this lead to Gabor-like receptive fields and divisive gain modulation from local surrounds; these have led to influential neural and psychological models of visual processing. However, these accounts are based on an incomplete view of the visual context surrounding each point. Here, we consider an approximate model of linear and non-linear correlations between the responses of spatially distributed Gabor-like receptive fields, which, when trained on an ensemble of natural scenes, unifies a range of spatial context effects. The full model accounts for neural surround data in primary visual cortex (V1), provides a statistical foundation for perceptual phenomena associated with Lis (2002) hypothesis that V1 builds a saliency map, and fits data on the tilt illusion.

We adapt a probabilistic latent variable model, namely GaP (Gamma-Poisson) [6], to ad targeting in the contexts of sponsored search (SS) and behaviorally targeted (BT) display advertising. We also approach the important problem of ad positional biasby formulating a one-latent-dimension GaP factorization. Learning from click-through data is intrinsically large scale, even more so for ads. We scale up the algorithm to terabytes of real-world SS and BT data that contains hundreds of millions of users and hundreds of thousands of features, by leveraging the scalability characteristicsof the algorithm and the inherent structure of the problem including data sparsity and locality. Specifically, we demonstrate two somewhat orthogonal philosophies of scaling algorithms to large-scale problems, through the SS and BT implementations, respectively. Finally, we report the experimental resultsusing Yahoo's vast datasets, and show that our approach substantially outperform the state-of-the-art methods in prediction accuracy. For BT in particular, theROC area achieved by GaP is exceeding 0.95, while one prior approach using Poisson regression [11] yielded 0.83. For computational performance, we compare a single-node sparse implementation with a parallel implementation using HadoopMapReduce, the results are counterintuitive yet quite interesting. We therefore provide insights into the underlying principles of large-scale learning.