Modelling the density of an infectious disease in space and time is a task generally carried out separately from the diagnosis of that disease in individuals. These two inference problems are complementary, however: diagnosis of disease can be done more accurately if prior information from a spatial risk model is employed, and in turn a disease density model can benefit from the incorporation of rich symptomatic information rather than simple counts of presumed cases of infection. We propose a unifying framework for both of these tasks, and illustrate it with the case of malaria. To do this we first introduce a state space model of malaria spread, and secondly a computer vision based system for detecting plasmodium in microscopical blood smear images, which can be run on location-aware mobile devices. We demonstrate the tractability of combining both elements and the improvement in accuracy this brings about.

A key problem in climate science is how to combine the predictions of the multi-model ensemble of global climate models. Recent work in machine learning (Monteleoni et al. 2011) showed the promise of an algorithm for online learning with experts for this task.We extend the Tracking Climate Models (TCM) approach to (1) take into account climate model predictions at higher spatial resolutions and (2) to model geospatial neighborhood influence between regions. Our algorithm enables neighborhood influence by modifying the transition dynamics of the Hidden Markov Model used by TCM, allowing the performance of spatial neighbors to influence the temporal switching probabilities for the best expert (climate model) at a given location. In experiments on historical data at a variety of spatial resolutions, our algorithm demonstrates improvements over TCM, when tracking global temperature anomalies.

Local and distributed power generation is increasingly relianton renewable power sources, e.g., solar (photovoltaic or PV) andwind energy. The integration of such sources into the power grid ischallenging, however, due to their variable and intermittent energyoutput. To effectively use them on alarge scale, it is essential to be able to predict power generation at afine-grained level. We describe a novel Bayesian ensemble methodologyinvolving three diverse predictors. Each predictor estimates mixingcoefficients for integrating PV generation output profiles but capturesfundamentally different characteristics. Two of them employ classicalparameterized (naive Bayes) and non-parametric (nearest neighbor) methods tomodel the relationship between weather forecasts and PV output. The thirdpredictor captures the sequentiality implicit in PV generation and uses motifsmined from historical data to estimate the most likely mixture weights usinga stream prediction methodology. We demonstrate the success and superiority of ourmethods on real PV data from two locations that exhibit diverse weatherconditions. Predictions from our model can be harnessed to optimize schedulingof delay tolerant workloads, e.g., in a data center.

The flourishing of online labor markets such as Amazon Mechanical Turk (MTurk) makes it easy to recruit many workers for solving small tasks. We study whether information elicitation and aggregation over a combinatorial space can be achieved by integrating small pieces of potentially imprecise information, gathered from a large number of workers through simple, one-shot interactions in an online labor market. We consider the setting of predicting the ranking of $n$ competing candidates, each having a hidden underlying strength parameter. At each step, our method estimates the strength parameters from the collected pairwise comparison data and adaptively chooses another pairwise comparison question for the next recruited worker. Through an MTurk experiment, we show that the adaptive method effectively elicits and aggregates information, outperforming a naive method using a random pairwise comparison question at each step.

During broadcast events such as the Superbowl, the U.S. Presidential and Primary debates, etc., Twitter has become the de facto platform for crowds to share perspectives and commentaries about them. Given an event and an associated large-scale collection of tweets, there are two fundamental research problems that have been receiving increasing attention in recent years. One is to extract the topics covered by the event and the tweets; the other is to segment the event. So far these problems have been viewed separately and studied in isolation. In this work, we argue that these problems are in fact inter-dependent and should be addressed together. We develop a joint Bayesian model that performs topic modeling and event segmentation in one unified framework. We evaluate the proposed model both quantitatively and qualitatively on two large-scale tweet datasets associated with two events from different domains to show that it improves significantly over baseline models.

Many models of interest in the natural and social sciences have no closed-form likelihood function, which means that they cannot be treated using the usual techniques of statistical inference. In the case where such models can be efficiently simulated, Bayesian inference is still possible thanks to the Approximate Bayesian Computation (ABC) algorithm. Although many refinements have been suggested, ABC inference is still far from routine. ABC is often excruciatingly slow due to very low acceptance rates. In addition, ABC requires introducing a vector of "summary statistics", the choice of which is relatively arbitrary, and often require some trial and error, making the whole process quite laborious for the user. We introduce in this work the EP-ABC algorithm, which is an adaptation to the likelihood-free context of the variational approximation algorithm known as Expectation Propagation (Minka, 2001). The main advantage of EP-ABC is that it is faster by a few orders of magnitude than standard algorithms, while producing an overall approximation error which is typically negligible. A second advantage of EP-ABC is that it replaces the usual global ABC constraint on the vector of summary statistics computed on the whole dataset, by n local constraints of the form that apply separately to each data-point. As a consequence, it is often possible to do away with summary statistics entirely. In that case, EP-ABC approximates directly the evidence (marginal likelihood) of the model. Comparisons are performed in three real-world applications which are typical of likelihood-free inference, including one application in neuroscience which is novel, and possibly too challenging for standard ABC techniques.

We consider probabilistic multinomial probit classification using Gaussian process (GP) priors. The challenges with the multiclass GP classification are the integration over the non-Gaussian posterior distribution, and the increase of the number of unknown latent variables as the number of target classes grows. Expectation propagation (EP) has proven to be a very accurate method for approximate inference but the existing EP approaches for the multinomial probit GP classification rely on numerical quadratures or independence assumptions between the latent values from different classes to facilitate the computations. In this paper, we propose a novel nested EP approach which does not require numerical quadratures, and approximates accurately all between-class posterior dependencies of the latent values, but still scales linearly in the number of classes. The predictive accuracy of the nested EP approach is compared to Laplace, variational Bayes, and Markov chain Monte Carlo (MCMC) approximations with various benchmark data sets. In the experiments nested EP was the most consistent method with respect to MCMC sampling, but the differences between the compared methods were small if only the classification accuracy is concerned.

Images obtained with coherent illumination, as is the case of sonar, ultrasound-B, laser and Synthetic Aperture Radar -- SAR, are affected by speckle noise which reduces the ability to extract information from the data. Specialized techniques are required to deal with such imagery, which has been modeled by the G0 distribution and under which regions with different degrees of roughness and mean brightness can be characterized by two parameters; a third parameter, the number of looks, is related to the overall signal-to-noise ratio. Assessing distances between samples is an important step in image analysis; they provide grounds of the separability and, therefore, of the performance of classification procedures. This work derives and compares eight stochastic distances and assesses the performance of hypothesis tests that employ them and maximum likelihood estimation. We conclude that tests based on the triangular distance have the closest empirical size to the theoretical one, while those based on the arithmetic-geometric distances have the best power. Since the power of tests based on the triangular distance is close to optimum, we conclude that the safest choice is using this distance for hypothesis testing, even when compared with classical distances as Kullback-Leibler and Bhattacharyya.

The task of matching co-referent records is known among other names as rocord linkage. For large record-linkage problems, often there is little or no labeled data available, but unlabeled data shows a reasonable clear structure. For such problems, unsupervised or semi-supervised methods are preferable to supervised methods. In this paper, we describe a hierarchical graphical model framework for the linakge-problem in an unsupervised setting. In addition to proposing new methods, we also cast existing unsupervised probabilistic record-linkage methods in this framework. Some of the techniques we propose to minimize overfitting in the above model are of interest in the general graphical model setting. We describe a method for incorporating monotinicity constraints in a graphical model. We also outline a bootstrapping approach of using "single-field" classifiers to noisily label latent variables in a hierarchical model. Experimental results show that our proposed unsupervised methods perform quite competitively even with fully supervised record-linkage methods.

Mixtures of truncated exponentials (MTE) potentials are an alternative to discretization for representing continuous chance variables in influence diagrams. Also, MTE potentials can be used to approximate utility functions. This paper introduces MTE influence diagrams, which can represent decision problems without restrictions on the relationships between continuous and discrete chance variables, without limitations on the distributions of continuous chance variables, and without limitations on the nature of the utility functions. In MTE influence diagrams, all probability distributions and the joint utility function (or its multiplicative factors) are represented by MTE potentials and decision nodes are assumed to have discrete state spaces. MTE influence diagrams are solved by variable elimination using a fusion algorithm.