One of the most famous optimization procedures for combinatorial optimization is the Genetic Algorithm (GA). By maintaining a population of solutions, the GA can be viewed as implicitly modeling of the solutions seen in the search process. In the standard GA, new solutions are generated by applying randomized recombination operators on two or more high-quality individuals of the current population (Goldberg, 1989). These recombination operators, such as one-point, two-point or uniform crossover, randomly select non-overlapping subsets of two "parent" solutions to form "children" solutions. By using a crossover operator that preserves groups of parameters from parents to children, the GA attempts to capture dependencies between the parameters implicitly. The poor behavior of genetic algorithms in some problems, sometimes attributed to designed operators, has led to the development of other types of algorithms. The Probabilistic Model Building Genetic Algorithms (PMBGAs) or Estimation of Distribution Algorithms (EDAs) are a class of algorithms which has been developed recently to preserve the building blocks (Larranaga and Lozano, 2001). The principal concept in this new technique is to prevent the disruption of partial solutions contained in a solution by building a probabilistic model.

Artificial Chemistries (ACs) are symbolic chemical metaphors for the exploration of Artificial Life, with specific focus on the problem of biogenesis or the origin of life. This paper presents authors thoughts towards defining a unified framework to characterize and classify symbolic artificial chemistries by devising appropriate formalism to capture semantic and organizational information. We identify three basic high level abstractions in initial proposal for this framework viz., information, computation, and communication. We present an analysis of two important notions of information, namely, Shannon's Entropy and Algorithmic Information, and discuss inductive and deductive approaches for defining the framework. Work done when author was in NUS (2002-2005).

Artificial Chemistries (ACs) are symbolic chemical metaphors for the exploration of Artificial Life, with specific focus on the origin of life. In this work we define a P system based artificial graph chemistry to understand the principles leading to the evolution of life-like structures in an AC set up and to develop a unified framework to characterize and classify symbolic artificial chemistries by devising appropriate formalism to capture semantic and organizational information. An extension of P system is considered by associating probabilities with the rules providing the topological framework for the evolution of a labeled undirected graph based molecular reaction semantics.

Autoencoder neural network is implemented to estimate the missing data. Genetic algorithm is implemented for network optimization and estimating the missing data. Missing data is treated as Missing At Random mechanism by implementing maximum likelihood algorithm. The network performance is determined by calculating the mean square error of the network prediction. The network is further optimized by implementing Decision Forest. The impact of missing data is then investigated and decision forrests are found to improve the results.

This philosophical paper explores the relation between modern scientific simulations and the future of the universe. We argue that a simulation of an entire universe will result from future scientific activity. This requires us to tackle the challenge of simulating open-ended evolution at all levels in a single simulation. The simulation should encompass not only biological evolution, but also physical evolution (a level below) and cultural evolution (a level above). The simulation would allow us to probe what would happen if we would "replay the tape of the universe" with the same or different laws and initial conditions. We also distinguish between real-world and artificial-world modelling. Assuming that intelligent life could indeed simulate an entire universe, this leads to two tentative hypotheses. Some authors have argued that we may already be in a simulation run by an intelligent entity. Or, if such a simulation could be made real, this would lead to the production of a new universe. This last direction is argued with a careful speculative philosophical approach, emphasizing the imperative to find a solution to the heat death problem in cosmology. The reader is invited to consult Annex 1 for an overview of the logical structure of this paper. -- Keywords: far future, future of science, ALife, simulation, realization, cosmology, heat death, fine-tuning, physical eschatology, cosmological natural selection, cosmological artificial selection, artificial cosmogenesis, selfish biocosm hypothesis, meduso-anthropic principle, developmental singularity hypothesis, role of intelligent life.

EVOC (for EVOlution of Culture) is a computer model of culture that enables us to investigate how various factors such as barriers to cultural diffusion, the presence and choice of leaders, or changes in the ratio of innovation to imitation affect the diversity and effectiveness of ideas. It consists of neural network based agents that invent ideas for actions, and imitate neighbors' actions. The model is based on a theory of culture according to which what evolves through culture is not memes or artifacts, but the internal models of the world that give rise to them, and they evolve not through a Darwinian process of competitive exclusion but a Lamarckian process involving exchange of innovation protocols. EVOC shows an increase in mean fitness of actions over time, and an increase and then decrease in the diversity of actions. Diversity of actions is positively correlated with population size and density, and with barriers between populations. Slowly eroding borders increase fitness without sacrificing diversity by fostering specialization followed by sharing of fit actions. Introducing a leader that broadcasts its actions throughout the population increases the fitness of actions but reduces diversity of actions. Increasing the number of leaders reduces this effect. Efforts are underway to simulate the conditions under which an agent immigrating from one culture to another contributes new ideas while still'fitting in'.

A large class of systems of biological and technological relevance can be described as analog networks, that is, collections of dynamical devices interconnected by links of varying strength. Some examples of analog networks are genetic regulatory networks, metabolic networks, neural networks, analog electronic circuits, and control systems. Analog networks are typically complex systems which include nonlinear feedback loops and possess temporal dynamics at different time scales. Both the synthesis and reverse engineering of analog networks are recognized as knowledge-intensive activities, for which few systematic techniques exist. In this paper we will discuss the general relevance of the analog network concept and describe an evolutionary approach to the automatic synthesis and the reverse engineering of analog networks. The proposed approach is called analog genetic encoding (AGE) and realizes an implicit genetic encoding of analog networks. AGE permits the evolution of human-competitive solutions to real-world analog network design and identification problems. This is illustrated by some examples of application to the design of electronic circuits, control systems, learning neural architectures, and the reverse engineering of biological networks.

HE term "bin packing" describes a class of well-known, classical problems with numerous applications in logistics, operations research and related disciplines. From single dimensional to multidimensional problems, various types can be identified in practice. Common to all is the overall task of packing a finite number of n items into a minimum number of bins (knapsacks) subject to a set of practical constraints and requirements. These include given capacities of the bins, but also other considerations such as irregularly shaped bins, load balancing of the bins, etc. Numerous approaches including exact, heuristic, and metaheuristic algorithms have been proposed for the resolution of bin packing problems, and a rich literature on packing problems exists, with important classifications by D

The talk describes a general approach of a genetic algorithm for multiple objective optimization problems. A particular dominance relation between the individuals of the population is used to define a fitness operator, enabling the genetic algorithm to adress even problems with efficient, but convex-dominated alternatives. The algorithm is implemented in a multilingual computer program, solving vehicle routing problems with time windows under multiple objectives. The graphical user interface of the program shows the progress of the genetic algorithm and the main parameters of the approach can be easily modified. In addition to that, the program provides powerful decision support to the decision maker. The software has proved it's excellence at the finals of the European Academic Software Award EASA, held at the Keble college/ University of Oxford/ Great Britain.

The article describes an investigation of the effectiveness of genetic algorithms for multi-objective combinatorial optimization (MOCO) by presenting an application for the vehicle routing problem with soft time windows. The work is motivated by the question, if and how the problem structure influences the effectiveness of different configurations of the genetic algorithm. Computational results are presented for different classes of vehicle routing problems, varying in their coverage with time windows, time window size, distribution and number of customers. The results are compared with a simple, but effective local search approach for multi-objective combinatorial optimization problems.