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 Evolutionary Systems


Pogosim -- a Simulator for Pogobot robots

arXiv.org Artificial Intelligence

Pogobots are a new type of open-source/open-hardware robots specifically designed for swarm robotics research. Their cost-effective and modular design, complemented by vibration-based and wheel-based locomotion, fast infrared communication and extensive software architecture facilitate the implementation of swarm intelligence algorithms. However, testing even simple distributed algorithms directly on robots is particularly labor-intensive. Scaling to more complex problems or calibrate user code parameters will have a prohibitively high strain on available resources. In this article we present Pogosim, a fast and scalable simulator for Pogobots, designed to reduce as much as possible algorithm development costs. The exact same code will be used in both simulation and to experimentally drive real robots. This article details the software architecture of Pogosim, explain how to write configuration files and user programs and how simulations approximate or differ from experiments. We describe how a large set of simulations can be launched in parallel, how to retrieve and analyze the simulation results, and how to optimize user code parameters using optimization algorithms.


Neural cellular automata: applications to biology and beyond classical AI

arXiv.org Artificial Intelligence

Neural Cellular Automata (NCA) represent a powerful framework for modeling biological self-organization, extending classical rule-based systems with trainable, differentiable (or evolvable) update rules that capture the adaptive self-regulatory dynamics of living matter. By embedding Artificial Neural Networks (ANNs) as local decision-making centers and interaction rules between localized agents, NCA can simulate processes across molecular, cellular, tissue, and system-level scales, offering a multiscale competency architecture perspective on evolution, development, regeneration, aging, morphogenesis, and robotic control. These models not only reproduce biologically inspired target patterns but also generalize to novel conditions, demonstrating robustness to perturbations and the capacity for open-ended adaptation and reasoning. Given their immense success in recent developments, we here review current literature of NCAs that are relevant primarily for biological or bioengineering applications. Moreover, we emphasize that beyond biology, NCAs display robust and generalizing goal-directed dynamics without centralized control, e.g., in controlling or regenerating composite robotic morphologies or even on cutting-edge reasoning tasks such as ARC-AGI-1. In addition, the same principles of iterative state-refinement is reminiscent to modern generative Artificial Intelligence (AI), such as probabilistic diffusion models. Their governing self-regulatory behavior is constraint to fully localized interactions, yet their collective behavior scales into coordinated system-level outcomes. We thus argue that NCAs constitute a unifying computationally lean paradigm that not only bridges fundamental insights from multiscale biology with modern generative AI, but have the potential to design truly bio-inspired collective intelligence capable of hierarchical reasoning and control.


ENJ: Optimizing Noise with Genetic Algorithms to Jailbreak LSMs

arXiv.org Artificial Intelligence

These samples sound like harmless noise to humans but can induce the model to parse and execute harmful commands. Extensive experiments on multiple mainstream speech models show that ENJ's attack effectiveness is significantly superior to existing baseline methods. This research reveals the dual role of noise in speech security and provides new critical insights for model security defense in complex acoustic environments. Index T erms-- Large Speech Model, Jailbreak Attack, Genetic Algorithm, Environmental Noise 1. INTRODUCTION Driven by deep learning and large-scale data, Large-scale Speech Models (LSMs) have made remarkable progress, profoundly changing the way of human - computer interaction. As these models become increasingly capable and widely used in voice control systems, the security risks they expose are in urgent need of in-depth examination [1, 2]. Different from text-based models, LSMs essentially process information transmitted in audible audio signals, which creates a unique attack surface. Among them, "Jailbreaking" is a key threat [3, 4]. In jailbreaking attacks, attackers aim to construct specific inputs to induce the model to bypass its built - in security protection mechanisms and execute harmful instructions while keeping the output semantically understandable [5].


Decoupling Search and Learning in Neural Net Training

arXiv.org Artificial Intelligence

Gradient descent typically converges to a single minimum of the training loss without mechanisms to explore alternative minima that may generalize better. Searching for diverse minima directly in high-dimensional parameter space is generally intractable. To address this, we propose a framework that performs training in two distinct phases: search in a tractable representation space (the space of intermediate activations) to find diverse representational solutions, and gradient-based learning in parameter space by regressing to those searched representations. Through evolutionary search, we discover representational solutions whose fitness and diversity scale with compute--larger populations and more generations produce better and more varied solutions. These representations prove to be learnable: networks trained by regressing to searched representations approach SGD's performance on MNIST, CIFAR-10, and CIFAR-100. Performance improves with search compute up to saturation. The resulting models differ qualitatively from networks trained with gradient descent, following different representational trajectories during training. This work demonstrates how future training algorithms could overcome gradient descent's exploratory limitations by decoupling search in representation space from efficient gradient-based learning in parameter space. Neural network training is fundamentally a search process over parameter configurations, seeking those that minimize training loss while generalizing well to unseen data.


ZapGPT: Free-form Language Prompting for Simulated Cellular Control

arXiv.org Artificial Intelligence

Human language is one of the most expressive tools for conveying intent, yet most artificial or biological systems lack mechanisms to interpret or respond meaningfully to it. Bridging this gap could enable more natural forms of control over complex, decentralized systems. In AI and artificial life, recent work explores how language can specify high-level goals, but most systems still depend on engineered rewards, task-specific supervision, or rigid command sets, limiting generalization to novel instructions. Similar constraints apply in synthetic biology and bioengineering, where the locus of control is often genomic rather than environmental perturbation. A key open question is whether artificial or biological collectives can be guided by free-form natural language alone, without task-specific tuning or carefully designed evaluation metrics. We provide one possible answer here by showing, for the first time, that simple agents' collective behavior can be guided by free-form language prompts: one AI model transforms an imperative prompt into an intervention that is applied to simulated cells; a second AI model scores how well the prompt describes the resulting cellular dynamics; and the former AI model is evolved to improve the scores generated by the latter. Unlike previous work, our method does not require engineered fitness functions or domain-specific prompt design. We show that the evolved system generalizes to unseen prompts without retraining. By treating natural language as a control layer, the system suggests a future in which spoken or written prompts could direct computational, robotic, or biological systems to desired behaviors. This work provides a concrete step toward this vision of AI-biology partnerships, in which language replaces mathematical objective functions, fixed rules, and domain-specific programming.


An Internet of Intelligent Things Framework for Decentralized Heterogeneous Platforms

arXiv.org Artificial Intelligence

--Internet of Intelligent Things (IoIT), an emerging field, combines the utility of Internet of Things (IoT) devices with the innovation of embedded AI algorithms. However, it does not come without challenges, and struggles regarding available computing resources, energy supply, and storage limitations. In particular, many impediments to IoIT are linked to the energy-efficient deployment of machine learning (ML)/deep learning (DL) models in embedded devices. Research has been conducted to design energy-efficient IoIT platforms, but these papers often focus on centralized systems, in which some central entity processes all the data and coordinates actions. This can be problematic, e.g., serve as bottleneck or lead to security concerns. In a decentralized system, nodes/devices would self-organize and make their own decisions. Therefore, to address such issues, we propose a heterogeneous, decentralized sensing and monitoring IoIT peer-to-peer mesh network system model. Nodes in the network will coordinate towards several optimization goals: reliability, energy efficiency, and latency. The system employs federated learning to train nodes in a distributed manner, metaheuristics to optimize task allocation and routing paths, and multi-objective optimization to balance conflicting performance goals. Internet of Intelligent Things (IoIT), an emerging field, combines the utility of Internet of Things (IoT) devices with the innovation of embedded AI algorithms. It provides predictive and faster data analytics in IoT platforms thanks to machine learning algorithms which enable intelligent processing of huge amounts of sensor-generated data. However, it does not come without challenges, and struggles regarding available computing resources, energy supply, and storage limitations. In particular, many impediments to IoIT are linked to the energy-efficient deployment of machine learning (ML)/deep learning (DL) models in embedded devices.


Exploring Multi-view Symbolic Regression methods in physical sciences

arXiv.org Artificial Intelligence

Describing the world behavior through mathematical functions help scientists to achieve a better understanding of the inner mechanisms of different phenomena. Traditionally, this is done by deriving new equations from first principles and careful observations. A modern alternative is to automate part of this process with symbolic regression (SR). The SR algorithms search for a function that adequately fits the observed data while trying to enforce sparsity, in the hopes of generating an interpretable equation. A particularly interesting extension to these algorithms is the Multi-view Symbolic Regression (MvSR). It searches for a parametric function capable of describing multiple datasets generated by the same phenomena, which helps to mitigate the common problems of overfitting and data scarcity. Recently, multiple implementations added support to MvSR with small differences between them. In this paper, we test and compare MvSR as supported in Operon, PySR, phy-SO, and eggp, in different real-world datasets. We show that they all often achieve good accuracy while proposing solutions with only few free parameters. However, we find that certain features enable a more frequent generation of better models. We conclude by providing guidelines for future MvSR developments.


Hadamard-Riemannian Optimization for Margin-Variance Ensemble

arXiv.org Artificial Intelligence

Ensemble learning has been widely recognized as a pivotal technique for boosting predictive performance by combining multiple base models. Nevertheless, conventional margin-based ensemble methods predominantly focus on maximizing the expected margin while neglecting the critical role of margin variance, which inherently restricts the generalization capability of the model and heightens its vulnerability to overfitting, particularly in noisy or imbalanced datasets. Additionally, the conventional approach of optimizing ensemble weights within the probability simplex often introduces computational inefficiency and scalability challenges, complicating its application to large-scale problems. To tackle these limitations, this paper introduces a novel ensemble learning framework that explicitly incorporates margin variance into the loss function. Our method jointly optimizes the negative expected margin and its variance, leading to enhanced robustness and improved generalization performance. Moreover, by reparameterizing the ensemble weights onto the unit sphere, we substantially simplify the optimization process and improve computational efficiency. Extensive experiments conducted on multiple benchmark datasets demonstrate that the proposed approach consistently outperforms traditional margin-based ensemble techniques, underscoring its effectiveness and practical utility.


The (R)evolution of Scientific Workflows in the Agentic AI Era: Towards Autonomous Science

arXiv.org Artificial Intelligence

Modern scientific discovery increasingly requires coordinating distributed facilities and heterogeneous resources, forcing researchers to act as manual workflow coordinators rather than scientists. Advances in AI leading to AI agents show exciting new opportunities that can accelerate scientific discovery by providing intelligence as a component in the ecosystem. However, it is unclear how this new capability would materialize and integrate in the real world. To address this, we propose a conceptual framework where workflows evolve along two dimensions which are intelligence (from static to intelligent) and composition (from single to swarm) to chart an evolutionary path from current workflow management systems to fully autonomous, distributed scientific laboratories. With these trajectories in mind, we present an architectural blueprint that can help the community take the next steps towards harnessing the opportunities in autonomous science with the potential for 100x discovery acceleration and transformational scientific workflows.


Critical Challenges and Guidelines in Evaluating Synthetic Tabular Data: A Systematic Review

arXiv.org Artificial Intelligence

Generating synthetic tabular data can be challenging, however evaluation of their quality is just as challenging, if not more. This systematic review sheds light on the critical importance of rigorous evaluation of synthetic health data to ensure reliability, relevance, and their appropriate use. Based on screening of 1766 papers and a detailed review of 101 papers we identified key challenges, including lack of consensus on evaluation methods, improper use of evaluation metrics, limited input from domain experts, inadequate reporting of dataset characteristics, and limited reproducibility of results. In response, we provide several guidelines on the generation and evaluation of synthetic data, to allow the community to unlock and fully harness the transformative potential of synthetic data and accelerate innovation.