The applicability of computational models to the biological world is an active topic of debate. We argue that a useful path forward results from abandoning hard boundaries between categories and adopting an observer-dependent, pragmatic view. Such a view dissolves the contingent dichotomies driven by human cognitive biases (e.g., tendency to oversimplify) and prior technological limitations in favor of a more continuous, gradualist view necessitated by the study of evolution, developmental biology, and intelligent machines. Efforts to re-shape living systems for biomedical or bioengineering purposes require prediction and control of their function at multiple scales. This is challenging for many reasons, one of which is that living systems perform multiple functions in the same place at the same time. We refer to this as "polycomputing" - the ability of the same substrate to simultaneously compute different things. This ability is an important way in which living things are a kind of computer, but not the familiar, linear, deterministic kind; rather, living things are computers in the broad sense of computational materials as reported in the rapidly-growing physical computing literature. We argue that an observer-centered framework for the computations performed by evolved and designed systems will improve the understanding of meso-scale events, as it has already done at quantum and relativistic scales. Here, we review examples of biological and technological polycomputing, and develop the idea that overloading of different functions on the same hardware is an important design principle that helps understand and build both evolved and designed systems. Learning to hack existing polycomputing substrates, as well as evolve and design new ones, will have massive impacts on regenerative medicine, robotics, and computer engineering.

Metaheuristics are popularly used in various fields, and they have attracted much attention in the scientific and industrial communities. In recent years, the number of new metaheuristic names has been continuously growing. Generally, the inventors attribute the novelties of these new algorithms to inspirations from either biology, human behaviors, physics, or other phenomena. In addition, these new algorithms, compared against basic versions of other metaheuristics using classical benchmark problems without shift/rotation, show competitive performances. In this study, we exhaustively tabulate more than 500 metaheuristics. To comparatively evaluate the performance of the recent competitive variants and newly proposed metaheuristics, 11 newly proposed metaheuristics and 4 variants of established metaheuristics are comprehensively compared on the CEC2017 benchmark suite. In addition, whether these algorithms have a search bias to the center of the search space is investigated. The results show that the performance of the newly proposed EBCM (effective butterfly optimizer with covariance matrix adaptation) algorithm performs comparably to the 4 well performing variants of the established metaheuristics and possesses similar properties and behaviors, such as convergence, diversity, exploration and exploitation trade-offs, in many aspects. The performance of all 15 of the algorithms is likely to deteriorate due to certain transformations, while the 4 state-of-the-art metaheuristics are less affected by transformations such as the shifting of the global optimal point away from the center of the search space. It should be noted that, except EBCM, the other 10 new algorithms proposed mostly during 2019-2020 are inferior to the well performing 2017 variants of differential evolution and evolution strategy in terms of convergence speed and global search ability on CEC 2017 functions.

We describe an approach for empirical modeling of steel phase kinetics based on symbolic regression and genetic programming. The algorithm takes processed data gathered from dilatometer measurements and produces a system of differential equations that models the phase kinetics. Our initial results demonstrate that the proposed approach allows to identify compact differential equations that fit the data. The model predicts ferrite, pearlite and bainite formation for a single steel type. Martensite is not yet included in the model. Future work shall incorporate martensite and generalize to multiple steel types with different chemical compositions.

Robots are traditionally bounded by a fixed embodiment during their operational lifetime, which limits their ability to adapt to their surroundings. Co-optimizing control and morphology of a robot, however, is often inefficient due to the complex interplay between the controller and morphology. In this paper, we propose a learning-based control method that can inherently take morphology into consideration such that once the control policy is trained in the simulator, it can be easily deployed to robots with different embodiments in the real world. In particular, we present the Embodiment-aware Transformer (EAT), an architecture that casts this control problem as conditional sequence modeling. EAT outputs the optimal actions by leveraging a causally masked Transformer. By conditioning an autoregressive model on the desired robot embodiment, past states, and actions, our EAT model can generate future actions that best fit the current robot embodiment. Experimental results show that EAT can outperform all other alternatives in embodiment-varying tasks, and succeed in an example of real-world evolution tasks: stepping down a stair through updating the morphology alone. We hope that EAT will inspire a new push toward real-world evolution across many domains, where algorithms like EAT can blaze a trail by bridging the field of evolutionary robotics and big data sequence modeling.

Machine learning methods have been used to accelerate the molecule optimization process. However, efficient search for optimized molecules satisfying several properties with scarce labeled data remains a challenge for machine learning molecule optimization. In this study, we propose MOMO, a multi-objective molecule optimization framework to address the challenge by combining learning of chemical knowledge with Pareto-based multi-objective evolutionary search. To learn chemistry, it employs a self-supervised codec to construct an implicit chemical space and acquire the continues representation of molecules. To explore the established chemical space, MOMO uses multi-objective evolution to comprehensively and efficiently search for similar molecules with multiple desirable properties. We demonstrate the high performance of MOMO on four multi-objective property and similarity optimization tasks, and illustrate the search capability of MOMO through case studies. Remarkably, our approach significantly outperforms previous approaches in optimizing three objectives simultaneously. The results show the optimization capability of MOMO, suggesting to improve the success rate of lead molecule optimization.

Indian e-commerce industry has evolved over the last decade and is expected to grow over the next few years. The focus has now shifted to turnaround time (TAT) due to the emergence of many third-party logistics providers and higher customer expectations. The key consideration for delivery providers is to balance their overall operating costs while meeting the promised TAT to their customers. E-commerce delivery partners operate through a network of facilities whose strategic locations help to run the operations efficiently. In this work, we identify the locations of hubs throughout the country and their corresponding mapping with the distribution centers. The objective is to minimize the total network costs with TAT adherence. We use Genetic Algorithm and leverage business constraints to reduce the solution search space and hence the solution time. The results indicate an improvement of 9.73% in TAT compliance compared with the current scenario.

Complex systems, such as life and languages, are governed by principles of evolution. The analogy and comparison between biology and linguistics\cite{alphafold2, RoseTTAFold, lang_virus, cell language, faculty1, language of gene, Protein linguistics, dictionary, Grammar of pro_dom, complexity, genomics_nlp, InterPro, language modeling, Protein language modeling} provide a computational foundation for characterizing and analyzing protein sequences, human corpora, and their evolution. However, no general mathematical formula has been proposed so far to illuminate the origin of quantitative hallmarks shared by life and language. Here we show several new statistical relationships shared by proteins and words, which inspire us to establish a general mechanism of evolution with explicit formulations that can incorporate both old and new characteristics. We found natural selection can be quantified via the entropic formulation by the principle of least effort to determine the sequence variation that survives in evolution. Besides, the origin of power law behavior and how changes in the environment stimulate the emergence of new proteins and words can also be explained via the introduction of function connection network. Our results demonstrate not only the correspondence between genetics and linguistics over their different hierarchies but also new fundamental physical properties for the evolution of complex adaptive systems. We anticipate our statistical tests can function as quantitative criteria to examine whether an evolution theory of sequence is consistent with the regularity of real data. In the meantime, their correspondence broadens the bridge to exchange existing knowledge, spurs new interpretations, and opens Pandora's box to release several potentially revolutionary challenges. For example, does linguistic arbitrariness conflict with the dogma that structure determines function?

Explicitly accounting for uncertainties is paramount to the safety of engineering structures. Optimization which is often carried out at the early stage of the structural design offers an ideal framework for this task. When the uncertainties are mainly affecting the objective function, robust design optimization is traditionally considered. This work further assumes the existence of multiple and competing objective functions that need to be dealt with simultaneously. The optimization problem is formulated by considering quantiles of the objective functions which allows for the combination of both optimality and robustness in a single metric. By introducing the concept of common random numbers, the resulting nested optimization problem may be solved using a general-purpose solver, herein the non-dominated sorting genetic algorithm (NSGA-II). The computational cost of such an approach is however a serious hurdle to its application in real-world problems. We therefore propose a surrogate-assisted approach using Kriging as an inexpensive approximation of the associated computational model. The proposed approach consists of sequentially carrying out NSGA-II while using an adaptively built Kriging model to estimate the quantiles. Finally, the methodology is adapted to account for mixed categorical-continuous parameters as the applications involve the selection of qualitative design parameters as well. The methodology is first applied to two analytical examples showing its efficiency. The third application relates to the selection of optimal renovation scenarios of a building considering both its life cycle cost and environmental impact. It shows that when it comes to renovation, the heating system replacement should be the priority.

In the field of derivative-free optimization, both of its main branches, the deterministic and nature-inspired techniques, experienced in recent years substantial advancement. In this paper, we provide an extensive computational comparison of selected methods from each of these branches. The chosen representatives were either standard and well-utilized methods, or the best-performing methods from recent numerical comparisons. The computational comparison was performed on five different benchmark sets and the results were analyzed in terms of performance, time complexity, and convergence properties of the selected methods. The results showed that, when dealing with situations where the objective function evaluations are relatively cheap, the nature-inspired methods have a significantly better performance than their deterministic counterparts. However, in situations when the function evaluations are costly or otherwise prohibited, the deterministic methods might provide more consistent and overall better results.

The performance of speech-processing models is heavily influenced by the speech corpus that is used for training and evaluation. In this study, we propose BAlanced Script PROducer (BASPRO) system, which can automatically construct a phonetically balanced and rich set of Chinese sentences for collecting Mandarin Chinese speech data. First, we used pretrained natural language processing systems to extract ten-character candidate sentences from a large corpus of Chinese news texts. Then, we applied a genetic algorithm-based method to select 20 phonetically balanced sentence sets, each containing 20 sentences, from the candidate sentences. Using BASPRO, we obtained a recording script called TMNews, which contains 400 ten-character sentences. TMNews covers 84% of the syllables used in the real world. Moreover, the syllable distribution has 0.96 cosine similarity to the real-world syllable distribution. We converted the script into a speech corpus using two text-to-speech systems. Using the designed speech corpus, we tested the performances of speech enhancement (SE) and automatic speech recognition (ASR), which are one of the most important regression- and classification-based speech processing tasks, respectively. The experimental results show that the SE and ASR models trained on the designed speech corpus outperform their counterparts trained on a randomly composed speech corpus.