Efficient coding provides a powerful principle for explaining early sensory coding. Most attempts to test this principle have been limited to linear, noiseless models, and when applied to natural images, have yielded oriented filters consistent with responses in primary visual cortex. Here we show that an efficient coding model that incorporates biologically realistic ingredients - input and output noise, nonlinear response functions, and a metabolic cost on the firing rate - predicts receptive fields and response nonlinearities similar to those observed in the retina. Specifically, we develop numerical methods for simultaneously learning the linear filters and response nonlinearities of a population of model neurons, so as to maximize information transmission subject to metabolic costs. When applied to an ensemble of natural images, the method yields filters that are center-surround and nonlinearities that are rectifying. The filters are organized into two populations, with On-and Off-centers, which independently tile the visual space. As observed in the primate retina, the Off-center neurons are more numerous and have filters with smaller spatial extent. In the absence of noise, our method reduces to a generalized version of independent components analysis, with an adapted nonlinear "contrast" function; in this case, the optimal filters are localized and oriented.

Paraphrase detection is the task of examining two sentences and determining whether they have the same meaning. In order to obtain high accuracy on this task, thorough syntactic and semantic analysis of the two statements is needed. We introduce a method for paraphrase detection based on recursive autoencoders (RAE). Our unsupervised RAEs are based on a novel unfolding objective and learn feature vectors for phrases in syntactic trees. These features are used to measure the word-and phrase-wise similarity between two sentences. Since sentences may be of arbitrary length, the resulting matrix of similarity measures is of variable size. We introduce a novel dynamic pooling layer which computes a fixed-sized representation from the variable-sized matrices. The pooled representation is then used as input to a classifier. Our method outperforms other state-of-the-art approaches on the challenging MSRP paraphrase corpus.

Inference in matrix-variate Gaussian models has major applications for multioutput prediction and joint learning of row and column covariances from matrixvariate data. Here, we discuss an approach for efficient inference in such models that explicitly account for iid observation noise. Computational tractability can be retained by exploiting the Kronecker product between row and column covariance matrices. Using this framework, we show how to generalize the Graphical Lasso in order to learn a sparse inverse covariance between features while accounting for a low-rank confounding covariance between samples. We show practical utility on applications to biology, where we model covariances with more than 100,000 dimensions. We find greater accuracy in recovering biological network structures and are able to better reconstruct the confounders.

Recently, image categorization has been an active research topic due to the urgent need to retrieve and browse digital images via semantic keywords. This paper formulates image categorization as a multi-label classification problem using recent advances in matrix completion. Under this setting, classification of testing data is posed as a problem of completing unknown label entries on a data matrix that concatenates training and testing features with training labels. We propose two convex algorithms for matrix completion based on a Rank Minimization criterion specifically tailored to visual data, and prove its convergence properties.

Brain-computer interfaces (BCIs) use brain signals to convey a user's intent. Some BCI approaches begin by decoding kinematic parameters of movements from brain signals, and then proceed to using these signals, in absence of movements, to allow a user to control an output. Recent results have shown that electrocorticographic (ECoG) recordings from the surface of the brain in humans can give information about kinematic parameters (e.g., hand velocity or finger flexion). The decoding approaches in these demonstrations usually employed classical classification/regression algorithms that derive a linear mapping between brain signals and outputs. However, they typically only incorporate little prior information about the target kinematic parameter.

We introduce the Gamma-Exponential Process (GEP), a prior over a large family of continuous time stochastic processes. A hierarchical version of this prior (HGEP; the Hierarchical GEP) yields a useful model for analyzing complex time series. Models based on HGEPs display many attractive properties: conjugacy, exchangeability and closed-form predictive distribution for the waiting times, and exact Gibbs updates for the time scale parameters. After establishing these properties, we show how posterior inference can be carried efficiently using Particle MCMC methods [1]. This yields a MCMC algorithm that can resample entire sequences atomically while avoiding the complications of introducing slice and stick auxiliary variables of the beam sampler [2]. We applied our model to the problem of estimating the disease progression in multiple sclerosis [3], and to RNA evolutionary modeling [4]. In both domains, we found that our model outperformed the standard rate matrix estimation approach.

Efficient coding provides a powerful principle for explaining early sensory coding. Most attempts to test this principle have been limited to linear, noiseless models, and when applied to natural images, have yielded oriented filters consistent with responses in primary visual cortex. Here we show that an efficient coding model that incorporates biologically realistic ingredients - input and output noise, nonlinear response functions, and a metabolic cost on the firing rate - predicts receptive fields and response nonlinearities similar to those observed in the retina. Specifically, we develop numerical methods for simultaneously learning the linear filters and response nonlinearities of a population of model neurons, so as to maximize information transmission subject to metabolic costs. When applied to an ensemble of natural images, the method yields filters that are center-surround and nonlinearities that are rectifying. The filters are organized into two populations, with On-and Off-centers, which independently tile the visual space. As observed in the primate retina, the Off-center neurons are more numerous and have filters with smaller spatial extent. In the absence of noise, our method reduces to a generalized version of independent components analysis, with an adapted nonlinear "contrast" function; in this case, the optimal filters are localized and oriented.

Paraphrase detection is the task of examining two sentences and determining whether they have the same meaning. In order to obtain high accuracy on this task, thorough syntactic and semantic analysis of the two statements is needed. We introduce a method for paraphrase detection based on recursive autoencoders (RAE). Our unsupervised RAEs are based on a novel unfolding objective and learn feature vectors for phrases in syntactic trees. These features are used to measure the word-and phrase-wise similarity between two sentences. Since sentences may be of arbitrary length, the resulting matrix of similarity measures is of variable size. We introduce a novel dynamic pooling layer which computes a fixed-sized representation from the variable-sized matrices. The pooled representation is then used as input to a classifier. Our method outperforms other state-of-the-art approaches on the challenging MSRP paraphrase corpus.

Inference in matrix-variate Gaussian models has major applications for multioutput prediction and joint learning of row and column covariances from matrixvariate data. Here, we discuss an approach for efficient inference in such models that explicitly account for iid observation noise. Computational tractability can be retained by exploiting the Kronecker product between row and column covariance matrices. Using this framework, we show how to generalize the Graphical Lasso in order to learn a sparse inverse covariance between features while accounting for a low-rank confounding covariance between samples. We show practical utility on applications to biology, where we model covariances with more than 100,000 dimensions. We find greater accuracy in recovering biological network structures and are able to better reconstruct the confounders.

Recently, image categorization has been an active research topic due to the urgent need to retrieve and browse digital images via semantic keywords. This paper formulates image categorization as a multi-label classification problem using recent advances in matrix completion. Under this setting, classification of testing data is posed as a problem of completing unknown label entries on a data matrix that concatenates training and testing features with training labels. We propose two convex algorithms for matrix completion based on a Rank Minimization criterion specifically tailored to visual data, and prove its convergence properties.