Conventional end-to-end (E2E) driving models are effective at generating physically plausible trajectories, but often fail to generalize to long-tail scenarios due to the lack of essential world knowledge to understand and reason about surrounding environments. In contrast, Vision-Language-Action (VLA) models leverage world knowledge to handle challenging cases, but their limited 3D reasoning capability can lead to physically infeasible actions. In this work we introduce DiffVLA++, an enhanced autonomous driving framework that explicitly bridges cognitive reasoning and E2E planning through metric-guided alignment. First, we build a VLA module directly generating semantically grounded driving trajectories. Second, we design an E2E module with a dense trajectory vocabulary that ensures physical feasibility. Third, and most critically, we introduce a metric-guided trajectory scorer that guides and aligns the outputs of the VLA and E2E modules, thereby integrating their complementary strengths. The experiment on the ICCV 2025 Autonomous Grand Challenge leaderboard shows that our model achieves EPDMS of 49.12.

Nanopore sequencing enables real-time long-read DNA sequencing with reads exceeding 10 kilobases, but inherent error rates of 12-15 percent present significant computational challenges for read alignment. The critical seed chaining step must connect exact k-mer matches between reads and reference genomes while filtering spurious matches, yet state-of-the-art methods rely on fixed gap penalty functions unable to adapt to varying genomic contexts including tandem repeats and structural variants. This paper presents RawHash3, a hybrid framework combining graph neural networks with classical dynamic programming for adaptive seed chaining that maintains real-time performance while providing statistical guarantees. We formalize seed chaining as graph learning where seeds constitute nodes with 12-dimensional feature vectors and edges encode 8-dimensional spatial relationships including gap consistency. Our architecture employs three-layer EdgeConv GNN with confidence-based method selection that dynamically switches between learned guidance and algorithmic fallback. Comprehensive evaluation on 1,000 synthetic nanopore reads with 5,200 test seeds demonstrates RawHash3 achieves 99.94 percent precision and 40.07 percent recall, representing statistically significant 25.0 percent relative improvement over baseline with p less than 0.001. The system maintains median inference latency of 1.59ms meeting real-time constraints, while demonstrating superior robustness with 100 percent success rate under 20 percent label corruption versus baseline degradation to 30.3 percent. Cross-validation confirms stability establishing graph neural networks as viable approach for production genomics pipelines.

Parkinson's disease assessment has garnered growing interest in recent years, particularly with the advent of sensor data and machine learning techniques. Among these, multimodal approaches have demonstrated strong performance by effectively integrating complementary information from various data sources. However, two major limitations hinder their practical application: (1) the need to synchronize all modalities during training, and (2) the dependence on all modalities during inference. To address these issues, we propose the first Parkinson's assessment system that formulates multimodal learning as a multi-objective optimization (MOO) problem. This not only allows for more flexible modality requirements during both training and inference, but also handles modality collapse issue during multimodal information fusion. In addition, to mitigate the imbalance within individual modalities, we introduce a margin-based class rebalancing strategy to enhance category learning. We conduct extensive experiments on three public datasets under both synchronous and asynchronous settings. The results show that our framework-Towards Relaxed InPuts (TRIP)-achieves state-of-the-art performance, outperforming the best baselines by 16.48, 6.89, and 11.55 percentage points in the asynchronous setting, and by 4.86 and 2.30 percentage points in the synchronous setting, highlighting its effectiveness and adaptability.

The 6th annual Conference on Health, Inference, and Learning (CHIL 2025), hosted by the Association for Health Learning and Inference (AHLI), was held in person on June 25-27, 2025, at the University of California, Berkeley, in Berkeley, California, USA. As part of this year's program, we hosted Research Roundtables to catalyze collaborative, small-group dialogue around critical, timely topics at the intersection of machine learning and healthcare. Each roundtable was moderated by a team of senior and junior chairs who fostered open exchange, intellectual curiosity, and inclusive engagement. The sessions emphasized rigorous discussion of key challenges, creative exploration of emerging opportunities, and collective ideation toward actionable directions in the field. Overall, the Research Roundtables brought together a diverse mix of participants, including academic researchers, clinicians, industry professionals, and policy experts. In total, eight roundtables were held across two 30-minute sessions, with a brief transition break to allow participants to join multiple discussions.

Evaluating the naturalness of dialogue in language models (LMs) is not trivial: notions of 'naturalness' vary, and scalable quantitative metrics remain limited. This study leverages the linguistic notion of 'at-issueness' to assess dialogue naturalness and introduces a new method: Divide, Generate, Recombine, and Compare (DGRC). DGRC (i) divides a dialogue as a prompt, (ii) generates continuations for subparts using LMs, (iii) recombines the dialogue and continuations, and (iv) compares the likelihoods of the recombined sequences. This approach mitigates bias in linguistic analyses of LMs and enables systematic testing of discourse-sensitive behavior. Applying DGRC, we find that LMs prefer to continue dialogue on at-issue content, with this effect enhanced in instruct-tuned models. They also reduce their at-issue preference when relevant cues (e.g., "Hey, wait a minute") are present. Although instruct-tuning does not further amplify this modulation, the pattern reflects a hallmark of successful dialogue dynamics.

Cascade ranking is a widely adopted paradigm in large-scale information retrieval systems for Top-K item selection. However, the Top-K operator is non-differentiable, hindering end-to-end training. Existing methods include Learning-to-Rank approaches (e.g., LambdaLoss), which optimize ranking metrics like NDCG and suffer from objective misalignment, and differentiable sorting-based methods (e.g., ARF, LCRON), which relax permutation matrices for direct Top-K optimization but introduce gradient conflicts through matrix aggregation. A promising alternative is to directly construct a differentiable approximation of the Top-K selection operator, bypassing the use of soft permutation matrices. However, even state-of-the-art differentiable Top-K operator (e.g., LapSum) require $O(n \log n)$ complexity due to their dependence on sorting for solving the threshold. Thus, we propose DFTopK, a novel differentiable Top-K operator achieving optimal $O(n)$ time complexity. By relaxing normalization constraints, DFTopK admits a closed-form solution and avoids sorting. DFTopK also avoids the gradient conflicts inherent in differentiable sorting-based methods. We evaluate DFTopK on both the public benchmark RecFLow and an industrial system. Experimental results show that DFTopK significantly improves training efficiency while achieving superior performance, which enables us to scale up training samples more efficiently. In the online A/B test, DFTopK yielded a +1.77% revenue lift with the same computational budget compared to the baseline. To the best of our knowledge, this work is the first to introduce differentiable Top-K operators into recommendation systems and the first to achieve theoretically optimal linear-time complexity for Top-K selection. We have open-sourced our implementation to facilitate future research in both academia and industry.

Building generalist robot policies that can handle diverse tasks in open-ended environments is a central challenge in robotics. To leverage knowledge from large-scale pretraining, prior work (VLA) has typically built generalist policies either on top of vision-language understanding models (VLMs) or generative models. However, both semantic understanding from vision-language pretraining and visual dynamics modeling from visual-generation pretraining are crucial for embodied robots. Recent unified models of generation and understanding have demonstrated strong capabilities in both comprehension and generation through large-scale pretraining. We posit that robotic policy learning can likewise benefit from the combined strengths of understanding, planning, and continuous future representation learning. Building on this insight, we introduce UniCoD, which acquires the ability to dynamically model high-dimensional visual features through pretraining on over 1M internet-scale instructional manipulation videos. Subsequently, UniCoD is fine-tuned on data collected from the robot embodiment, enabling the learning of mappings from predictive representations to action tokens. Extensive experiments show our approach consistently outperforms baseline methods in terms of 9\% and 12\% across simulation environments and real-world out-of-distribution tasks.

For autonomous legal agents to operate safely in high-stakes domains, they require a foundation of absolute determinism and auditability-guarantees that standard Retrieval-Augmented Generation (RAG) frameworks cannot provide. When interacting with temporal knowledge graphs that model the complex evolution of legal norms, agents must navigate versioning, causality, and hierarchical structures with precision, a task for which black-box vector search is ill-suited. This paper introduces a new architectural pattern to solve this: a formal Primitive API designed as a secure execution layer for reasoning over such graphs. Instead of a monolithic query engine, our framework provides a library of canonical primitives-atomic, composable, and auditable primitives. This design empowers planner-guided agents to decompose complex legal questions into transparent execution plans, enabling critical tasks with full verifiability, including: (i) precise point-in-time version retrieval, (ii) robust causal lineage tracing, and (iii) context-aware hybrid search. Ultimately, this architecture transforms opaque retrieval into auditable reasoning, turning the agent's internal process from a black box into a verifiable log of deterministic primitives and providing a blueprint for building the next generation of trustworthy legal AI.

Language models are increasingly applied to biological sequences like proteins and mRNA, yet their default Euclidean geometry may mismatch the hierarchical structures inherent to biological data. While hyperbolic geometry provides a better alternative for accommodating hierarchical data, it has yet to find a way into language modeling for mRNA sequences. In this work, we introduce HyperHELM, a framework that implements masked language model pre-training in hyperbolic space for mRNA sequences. Using a hybrid design with hyperbolic layers atop Euclidean backbone, HyperHELM aligns learned representations with the biological hierarchy defined by the relationship between mRNA and amino acids. Across multiple multi-species datasets, it outperforms Euclidean baselines on 9 out of 10 tasks involving property prediction, with 10% improvement on average, and excels in out-of-distribution generalization to long and low-GC content sequences; for antibody region annotation, it surpasses hierarchy-aware Euclidean models by 3% in annotation accuracy. Our results highlight hyperbolic geometry as an effective inductive bias for hierarchical language modeling of mRNA sequences. Language models have been increasingly applied to biological sequence data, fueled by the growth of large-scale omics datasets (Lin et al., 2023; Celaj et al., 2023; Brixi et al., 2025). The biological sequences, however, are structured differently from natural language, particularly in their hierarchical organization, where nucleotides or amino acids form motifs that can be nested within larger functional groups (Buhr et al., 2016). In this work, we take the rapidly expanding therapeutic domain of RNA, where the codon-amino acid hierarchy plays a key role in determining the biophysical properties of mRNA sequences and their expressed proteins (Clancy & Brown, 2008), and we focus on encoding this hierarchy directly into the representation space of a bio-language model by leveraging hyperbolic geometry.

Drug target interaction (DTI) prediction is a cornerstone of computational drug discovery, enabling rational design, repurposing, and mechanistic insights. While deep learning has advanced DTI modeling, existing approaches primarily rely on SMILES protein pairs and fail to exploit the rich multimodal information available for small molecules and proteins. We introduce GRAMDTI, a pretraining framework that integrates multimodal molecular and protein inputs into unified representations. GRAMDTI extends volume based contrastive learning to four modalities, capturing higher-order semantic alignment beyond conventional pairwise approaches. To handle modality informativeness, we propose adaptive modality dropout, dynamically regulating each modality's contribution during pre-training. Additionally, IC50 activity measurements, when available, are incorporated as weak supervision to ground representations in biologically meaningful interaction strengths. Experiments on four publicly available datasets demonstrate that GRAMDTI consistently outperforms state of the art baselines. Our results highlight the benefits of higher order multimodal alignment, adaptive modality utilization, and auxiliary supervision for robust and generalizable DTI prediction.