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Dynamic causal discovery in Alzheimer's disease through latent pseudotime modelling

arXiv.org Artificial Intelligence

The application of causal discovery to diseases like Alzheimer's (AD) is limited by the static graph assumptions of most methods; such models cannot account for an evolving pathophysiology, modulated by a latent disease pseudotime. We propose to apply an existing latent variable model to real-world AD data, inferring a pseudotime that orders patients along a data-driven disease trajectory independent of chronological age, then learning how causal relationships evolve. Pseudotime outperformed age in predicting diagnosis (AUC 0.82 vs 0.59). Incorporating minimal, disease-agnostic background knowledge substantially improved graph accuracy and orientation. Our framework reveals dynamic interactions between novel (NfL, GFAP) and established AD markers, enabling practical causal discovery despite violated assumptions.


evomap: A Toolbox for Dynamic Mapping in Python

arXiv.org Artificial Intelligence

This paper presents evomap, a Python package for dynamic mapping. Mapping methods are widely used across disciplines to visualize relationships among objects as spatial representations, or maps. However, most existing statistical software supports only static mapping, which captures objects' relationships at a single point in time and lacks tools to analyze how these relationships evolve. evomap fills this gap by implementing the dynamic mapping framework EvoMap, originally proposed by Matthe, Ringel, and Skiera (2023), which adapts traditional static mapping methods for dynamic analyses. The package supports multiple mapping techniques, including variants of Multidimensional Scaling (MDS), Sammon Mapping, and t-distributed Stochastic Neighbor Embedding (t-SNE). It also includes utilities for data preprocessing, exploration, and result evaluation, offering a comprehensive toolkit for dynamic mapping applications. This paper outlines the foundations of static and dynamic mapping, describes the architecture and functionality of evomap, and illustrates its application through an extensive usage example.


Environment Agnostic Goal-Conditioning, A Study of Reward-Free Autonomous Learning

arXiv.org Artificial Intelligence

In this paper we study how transforming regular reinforcement learning environments into goal-conditioned environments can let agents learn to solve tasks autonomously and reward-free. We show that an agent can learn to solve tasks by selecting its own goals in an environment-agnostic way, at training times comparable to externally guided reinforcement learning. Our method is independent of the underlying off-policy learning algorithm. Since our method is environment-agnostic, the agent does not value any goals higher than others, leading to instability in performance for individual goals. However, in our experiments, we show that the average goal success rate improves and stabilizes. An agent trained with this method can be instructed to seek any observations made in the environment, enabling generic training of agents prior to specific use cases.


Question the Questions: Auditing Representation in Online Deliberative Processes

arXiv.org Artificial Intelligence

A central feature of many deliberative processes, such as citizens' assemblies and deliberative polls, is the opportunity for participants to engage directly with experts. While participants are typically invited to propose questions for expert panels, only a limited number can be selected due to time constraints. This raises the challenge of how to choose a small set of questions that best represent the interests of all participants. We introduce an auditing framework for measuring the level of representation provided by a slate of questions, based on the social choice concept known as justified representation (JR). We present the first algorithms for auditing JR in the general utility setting, with our most efficient algorithm achieving a runtime of $O(mn\log n)$, where $n$ is the number of participants and $m$ is the number of proposed questions. We apply our auditing methods to historical deliberations, comparing the representativeness of (a) the actual questions posed to the expert panel (chosen by a moderator), (b) participants' questions chosen via integer linear programming, (c) summary questions generated by large language models (LLMs). Our results highlight both the promise and current limitations of LLMs in supporting deliberative processes. By integrating our methods into an online deliberation platform that has been used for over hundreds of deliberations across more than 50 countries, we make it easy for practitioners to audit and improve representation in future deliberations.


Thinking with Video: Video Generation as a Promising Multimodal Reasoning Paradigm

arXiv.org Artificial Intelligence

"Thinking with Text" and "Thinking with Images" paradigm significantly improve the reasoning ability of large language models (LLMs) and Vision Language Models (VLMs). However, these paradigms have inherent limitations. (1) Images capture only single moments and fail to represent dynamic processes or continuous changes, and (2) The separation of text and vision as distinct modalities, hindering unified multimodal understanding and generation. To overcome these limitations, we introduce "Thinking with Video", a new paradigm that leverages video generation models, such as Sora-2, to bridge visual and textual reasoning in a unified temporal framework. To support this exploration, we developed the Video Thinking Benchmark (VideoThinkBench). VideoThinkBench encompasses two task categories: (1) vision-centric tasks (e.g., Eyeballing Puzzles), and (2) text-centric tasks (e.g., subsets of GSM8K, MMMU). Our evaluation establishes Sora-2 as a capable reasoner. On vision-centric tasks, Sora-2 is generally comparable to state-of-the-art (SOTA) VLMs, and even surpasses VLMs on several tasks, such as Eyeballing Games. On text-centric tasks, Sora-2 achieves 92% accuracy on MATH, and 75.53% accuracy on MMMU. Furthermore, we systematically analyse the source of these abilities. We also find that self-consistency and in-context learning can improve Sora-2's performance. In summary, our findings demonstrate that the video generation model is the potential unified multimodal understanding and generation model, positions "thinking with video" as a unified multimodal reasoning paradigm.


BanglaMedQA and BanglaMMedBench: Evaluating Retrieval-Augmented Generation Strategies for Bangla Biomedical Question Answering

arXiv.org Artificial Intelligence

Developing accurate biomedical Question Answering (QA) systems in low-resource languages remains a major challenge, limiting equitable access to reliable medical knowledge. This paper introduces BanglaMedQA and BanglaMMedBench, the first large-scale Bangla biomedical Multiple Choice Question (MCQ) datasets designed to evaluate reasoning and retrieval in medical artificial intelligence (AI). The study applies and benchmarks several Retrieval-Augmented Generation (RAG) strategies, including Traditional, Zero-Shot Fallback, Agentic, Iterative Feedback, and Aggregate RAG, combining textbook-based and web retrieval with generative reasoning to improve factual accuracy. A key novelty lies in integrating a Bangla medical textbook corpus through Optical Character Recognition (OCR) and implementing an Agentic RAG pipeline that dynamically selects between retrieval and reasoning strategies. Experimental results show that the Agentic RAG achieved the highest accuracy 89.54% with openai/gpt-oss-120b, outperforming other configurations and demonstrating superior rationale quality. These findings highlight the potential of RAG-based methods to enhance the reliability and accessibility of Bangla medical QA, establishing a foundation for future research in multilingual medical artificial intelligence.


Integrating Temporal and Structural Context in Graph Transformers for Relational Deep Learning

arXiv.org Artificial Intelligence

In domains such as healthcare, finance, and e-commerce, the temporal dynamics of relational data emerge from complex interactions-such as those between patients and providers, or users and products across diverse categories. To be broadly useful, models operating on these data must integrate long-range spatial and temporal dependencies across diverse types of entities, while also supporting multiple predictive tasks. However, existing graph models for relational data primarily focus on spatial structure, treating temporal information merely as a filtering constraint to exclude future events rather than a modeling signal, and are typically designed for single-task prediction. To address these gaps, we introduce a temporal subgraph sampler that enhances global context by retrieving nodes beyond the immediate neighborhood to capture temporally relevant relationships. In addition, we propose the Relational Graph Perceiver (RGP), a graph transformer architecture for relational deep learning that leverages a cross-attention-based latent bottleneck to efficiently integrate information from both structural and temporal contexts. This latent bottleneck integrates signals from different node and edge types into a common latent space, enabling the model to build global context across the entire relational system. RGP also incorporates a flexible cross-attention decoder that supports joint learning across tasks with disjoint label spaces within a single model. Experiments on RelBench, SALT, and CTU show that RGP delivers state-of-the-art performance, offering a general and scalable solution for relational deep learning with support for diverse predictive tasks.


Confidential Computing for Cloud Security: Exploring Hardware based Encryption Using Trusted Execution Environments

arXiv.org Artificial Intelligence

The growth of cloud computing has revolutionized data processing and storage capacities to another levels of scalability and flexibility. But in the process, it has created a huge challenge of security, especially in terms of safeguarding sensitive data. Classical security practices, including encryption at rest and during transit, fail to protect data in use and expose it to various possible breaches. In response to this problem , Confidential Computing has been a tool ,seeking to secure data in processing by usage of hardware-based Trusted Execution Environments (TEEs). TEEs, including Intel's Software Guard Extensions (SGX) and ARM's TrustZone, offers protected contexts within the processor, where data is kept confidential ,intact and secure , even with malicious software or compromised operating systems. In this research, we have explored the architecture and security features of TEEs like Intel SGX and ARM TrustZone, and their effectiveness in improving cloud data security. From a thorough literature survey ,we have analyzed the deployment strategies, performance indicators, and practical uses of these TEEs for the same purpose. In addition, we have discussed the issues regarding deployment, possible weaknesses, scalability issues, and integration issues. Our results focuses on the central position of TEEs in strengthening and advancing cloud security infrastructures, pointing towards their ability to create a secure foundation for Confidential Computing.


LLM-as-a-Judge: Toward World Models for Slate Recommendation Systems

arXiv.org Artificial Intelligence

Modeling user preferences across domains remains a key challenge in slate recommendation (i.e. recommending an ordered sequence of items) research. We investigate how Large Language Models (LLM) can effectively act as world models of user preferences through pairwise reasoning over slates. We conduct an empirical study involving several LLMs on three tasks spanning different datasets. Our results reveal relationships between task performance and properties of the preference function captured by LLMs, hinting towards areas for improvement and highlighting the potential of LLMs as world models in recommender systems.


Unified Generative Latent Representation for Functional Brain Graphs

arXiv.org Artificial Intelligence

Functional brain graphs are often characterized with separate graph-theoretic or spectral descriptors, overlooking how these properties covary and partially overlap across brains and conditions. We anticipate that dense, weighted functional connectivity graphs occupy a low-dimensional latent geometry along which both topological and spectral structures display graded variations. Here, we estimated this unified graph representation and enabled generation of dense functional brain graphs through a graph transformer autoencoder with latent diffusion, with spectral geometry providing an inductive bias to guide learning. This geometry-aware latent representation, although unsupervised, meaningfully separated working-memory states and decoded visual stimuli, with performance further enhanced by incorporating neural dynamics. From the diffusion modeled distribution, we were able to sample biologically plausible and structurally grounded synthetic dense graphs.