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CellStream: Dynamical Optimal Transport Informed Embeddings for Reconstructing Cellular Trajectories from Snapshots Data

arXiv.org Artificial Intelligence

Single-cell RNA sequencing (scRNA-seq), especially temporally resolved datasets, enables genome-wide profiling of gene expression dynamics at single-cell resolution across discrete time points. However, current technologies provide only sparse, static snapshots of cell states and are inherently influenced by technical noise, complicating the inference and representation of continuous transcriptional dynamics. Although embedding methods can reduce dimensionality and mitigate technical noise, the majority of existing approaches typically treat trajectory inference separately from embedding construction, often neglecting temporal structure. To address this challenge, here we introduce CellStream, a novel deep learning framework that jointly learns embedding and cellular dynamics from single-cell snapshots data by integrating an autoencoder with unbalanced dynamical optimal transport. Compared to existing methods, CellStream generates dynamics-informed embeddings that robustly capture temporal developmental processes while maintaining high consistency with the underlying data manifold. We demonstrate CellStream's effectiveness on both simulated datasets and real scRNA-seq data, including spatial transcriptomics. Our experiments indicate significant quantitative improvements over state-of-the-art methods in representing cellular trajectories with enhanced temporal coherence and reduced noise sensitivity. Overall, CellStream provides a new tool for learning and representing continuous streams from the noisy, static snapshots of single-cell gene expression.


Quantifying Distribution Shift in Traffic Signal Control with Histogram-Based GEH Distance

arXiv.org Artificial Intelligence

Traffic signal control algorithms are vulnerable to distribution shift, where performance degrades under traffic conditions that differ from those seen during design or training. This paper introduces a principled approach to quantify distribution shift by representing traffic scenarios as demand histograms and comparing them with a GEH-based distance function. The method is policy-independent, interpretable, and leverages a widely used traffic engineering statistic. We validate the approach on 20 simulated scenarios using both a NEMA actuated controller and a reinforcement learning controller (FRAP++). Results show that larger scenario distances consistently correspond to increased travel time and reduced throughput, with particularly strong explanatory power for learning-based control. Overall, this method can predict performance degradation under distribution shift better than previously published techniques. These findings highlight the utility of the proposed framework for benchmarking, training regime design, and monitoring in adaptive traffic signal control.


Imagine in Space: Exploring the Frontier of Spatial Intelligence and Reasoning Efficiency in Vision Language Models

arXiv.org Artificial Intelligence

Large language models (LLMs) and vision language models (VLMs), such as DeepSeek R1,OpenAI o3, and Gemini 2.5 Pro, have demonstrated remarkable reasoning capabilities across logical inference, problem solving, and decision making. However, spatial reasoning:a fundamental component of human cognition that includes mental rotation, navigation, and spatial relationship comprehension remains a significant challenge for current advanced VLMs. We hypothesize that imagination, the internal simulation of spatial states, is the dominant reasoning mechanism within a spatial world model. To test this hypothesis and systematically probe current VLM spatial reasoning mechanisms, we introduce SpatiaLite, a fully synthetic benchmark that jointly measures spatial reasoning accuracy and reasoning efficiency. Comprehensive experiments reveal three key findings. First, advanced VLMs predominantly rely on linguistic representations for reasoning and imagination, resulting in significant deficiencies on visual centric tasks that demand perceptual spatial relations and 3D geometry transformations such as mental rotation or projection prediction. Second, advanced VLMs exhibit severe inefficiency in their current spatial reasoning mechanisms, with token usage growing rapidly as transformation complexity increases. Third, we propose an Imagery Driven Framework (IDF) for data synthesis and training, which can implicitly construct an internal world model that is critical for spatial reasoning in VLMs. Building on SpatiaLite, this work delineates the spatial reasoning limits and patterns of advanced VLMs, identifies key shortcomings, and informs future advances


Semantic Multiplexing

arXiv.org Artificial Intelligence

Mobile devices increasingly require the parallel execution of several computing tasks offloaded at the wireless edge. Existing communication systems only support parallel transmissions at the bit level, which fundamentally limits the number of tasks that can be concurrently processed. To address this bottleneck, this paper introduces the new concept of Semantic Multiplexing. Our approach shifts stream multiplexing from bits to tasks by merging multiple task-related compressed representations into a single semantic representation. As such, Semantic Multiplexing can multiplex more tasks than the number of physical channels without adding antennas or widening bandwidth by extending the effective degrees of freedom at the semantic layer, without contradicting Shannon capacity rules. We have prototyped Semantic Multiplexing on an experimental testbed with Jetson Orin Nano and millimeter-wave software-defined radios and tested its performance on image classification and sentiment analysis while comparing to several existing baselines in semantic communications. Our experiments demonstrate that Semantic Multiplexing allows jointly processing multiple tasks at the semantic level while maintaining sufficient task accuracy. For example, image classification accuracy drops by less than 4% when increasing from 2 to 8 the number of tasks multiplexed over a 4$\times$4 channel. Semantic Multiplexing reduces latency, energy consumption, and communication load respectively by up to 8$\times$, 25$\times$, and 54$\times$ compared to the baselines while keeping comparable performance. We pledge to publicly share the complete software codebase and the collected datasets for reproducibility.


Known Meets Unknown: Mitigating Overconfidence in Open Set Recognition

arXiv.org Artificial Intelligence

Open Set Recognition (OSR) requires models not only to accurately classify known classes but also to effectively reject unknown samples. However, when unknown samples are semantically similar to known classes, inter-class overlap in the feature space often causes models to assign unjustifiably high confidence to them, leading to misclassification as known classes -- a phenomenon known as overconfidence. This overconfidence undermines OSR by blurring the decision boundary between known and unknown classes. To address this issue, we propose a framework that explicitly mitigates overconfidence caused by inter-class overlap. The framework consists of two components: a perturbation-based uncertainty estimation module, which applies controllable parameter perturbations to generate diverse predictions and quantify predictive uncertainty, and an unknown detection module with distinct learning-based classifiers, implemented as a two-stage procedure, which leverages the estimated uncertainty to improve discrimination between known and unknown classes, thereby enhancing OSR performance. Experimental results on three public datasets show that the proposed framework achieves superior performance over existing OSR methods.


Can LLMs Create Legally Relevant Summaries and Analyses of Videos?

arXiv.org Artificial Intelligence

Understanding the legally relevant factual basis of an event and conveying it through text is a key skill of legal professionals. This skill is important for preparing forms (e.g., insurance claims) or other legal documents (e.g., court claims), but often presents a challenge for laypeople. Current AI approaches aim to bridge this gap, but mostly rely on the user to articulate what has happened in text, which may be challenging for many. Here, we investigate the capability of large language models (LLMs) to understand and summarize events occurring in videos. We ask an LLM to summarize and draft legal letters, based on 120 YouTube videos showing legal issues in various domains. Overall, 71.7\% of the summaries were rated as of high or medium quality, which is a promising result, opening the door to a number of applications in e.g. access to justice.


ExplainableGuard: Interpretable Adversarial Defense for Large Language Models Using Chain-of-Thought Reasoning

arXiv.org Artificial Intelligence

Large Language Models (LLMs) are increasingly vulnerable to adversarial attacks that can subtly manipulate their outputs. While various defense mechanisms have been proposed, many operate as black boxes, lacking transparency in their decision-making. This paper introduces ExplainableGuard, an interpretable adversarial defense framework leveraging the chain-of-thought (CoT) reasoning capabilities of DeepSeek-Reasoner. Our approach not only detects and neutralizes adversarial perturbations in text but also provides step-by-step explanations for each defense action. We demonstrate how tailored CoT prompts guide the LLM to perform a multi-faceted analysis (character, word, structural, and semantic) and generate a purified output along with a human-readable justification. Preliminary results on the GLUE Benchmark and IMDB Movie Reviews dataset show promising defense efficacy. Additionally, a human evaluation study reveals that ExplainableGuard's explanations outperform ablated variants in clarity, specificity, and actionability, with a 72.5% deployability-trust rating, underscoring its potential for more trustworthy LLM deployments.


Game-theoretic Decentralized Coordination for Airspace Sector Overload Mitigation

arXiv.org Artificial Intelligence

Decentralized air tra ffic management systems o ff er a scalable alternative to centralized control, but often assume high levels of cooperation. In practice, such assumptions frequently break down since airspace sectors operate independently and prioritize local objectives. We address the problem of sector overload in decentralized air tra ffic management by proposing a mechanism that models self-interested behaviors based on best response dynamics. Each sector adjusts the departure times of flights under its control to reduce its own congestion, without any shared decision making. A tunable cooperativeness factor models the degree to which each sector is willing to reduce overload in other sectors. We prove that the proposed mechanism satisfies a potential game structure, ensuring that best response dynamics converge to a pure Nash equilibrium, under a mild restriction. In addition, we identify a su fficient condition under which an overload-free solution corresponds to a global minimizer of the potential function. Numerical experiments using 24 hours of European flight data demonstrate that the proposed algorithm substantially reduces overload even with only minimal cooperation between sectors, while maintaining scalability and matching the solution quality of centralized solvers. Keywords: Air Tra ffi c Management, Noncooperative Coordination, Game Theory, Potential Game, Decentralized System, Sector Overload 1. Introduction Decentralized approaches to air tra ffic management (A TM) are gaining attention as scalable alternatives to centralized control [1, 2, 3, 4, 5], due to the increasing complexity of air tra ffic.


Dynamic Temperature Scheduler for Knowledge Distillation

arXiv.org Artificial Intelligence

Knowledge Distillation (KD) trains a smaller student model using a large, pre-trained teacher model, with temperature as a key hyperparameter controlling the softness of output probabilities. Traditional methods use a fixed temperature throughout training, which is suboptimal. Moreover, architectural differences between teacher and student often result in mismatched logit magnitudes. We demonstrate that students benefit from softer probabilities early in training but require sharper probabilities in later stages. We introduce Dynamic Temperature Scheduler (DTS), which adjusts temperature dynamically based on the cross-entropy loss gap between teacher and student. To our knowledge, this is the first temperature scheduling method that adapts based on the divergence between teacher and student distributions. Our method integrates seamlessly with existing KD frameworks. We validate DTS across multiple KD strategies on vision (CIFAR-100, Tiny-ImageNet) and NLP tasks (GLUE, Dolly, SelfIns, UnNI, S-NI), consistently outperforming static-temperature baselines. Code is available at https://github.com/Sibgat-Ul/DTS.


Credal Ensemble Distillation for Uncertainty Quantification

arXiv.org Artificial Intelligence

Deep ensembles (DE) have emerged as a powerful approach for quantifying predictive uncertainty and distinguishing its aleatoric and epistemic components, thereby enhancing model robustness and reliability. However, their high computational and memory costs during inference pose significant challenges for wide practical deployment. To overcome this issue, we propose credal ensemble distillation (CED), a novel framework that compresses a DE into a single model, CREDIT, for classification tasks. Instead of a single softmax probability distribution, CREDIT predicts class-wise probability intervals that define a credal set, a convex set of probability distributions, for uncertainty quantification. Empirical results on out-of-distribution detection benchmarks demonstrate that CED achieves superior or comparable uncertainty estimation compared to several existing baselines, while substantially reducing inference overhead compared to DE.