Materials
GATE: Graph-based Adaptive Tool Evolution Across Diverse Tasks
Luo, Jianwen, Huang, Yiming, Meng, Jinxiang, Lei, Fangyu, He, Shizhu, Liu, Xiao, Jiang, Shanshan, Dong, Bin, Zhao, Jun, Liu, Kang
Large Language Models (LLMs) have shown great promise in tool-making, yet existing frameworks often struggle to efficiently construct reliable toolsets and are limited to single-task settings. To address these challenges, we propose GATE (Graph-based Adaptive Tool Evolution), an adaptive framework that dynamically constructs and evolves a hierarchical graph of reusable tools across multiple scenarios. We evaluate GATE on open-ended tasks (Minecraft), agent-based tasks (TextCraft, DABench), and code generation tasks (MATH, Date, TabMWP). Our results show that GATE achieves up to 4.3x faster milestone completion in Minecraft compared to the previous SOTA, and provides an average improvement of 9.23% over existing tool-making methods in code generation tasks and 10.03% in agent tasks. GATE demonstrates the power of adaptive evolution, balancing tool quantity, complexity, and functionality while maintaining high efficiency. Code and data are available at \url{https://github.com/ayanami2003/GATE}.
Identifying Dealbreakers and Robust Policies for the Energy Transition Amid Unexpected Events
Coppitters, Diederik, Wiest, Gabriel, Gรถke, Leonard, Contino, Francesco, Bardow, Andrรฉ, Moret, Stefano
Disruptions in energy imports, backlash in social acceptance, and novel technologies failing to develop are unexpected events that are often overlooked in energy planning, despite their ability to jeopardize the energy transition. We propose a method to explore unexpected events and assess their impact on the transition pathway of a large-scale whole-energy system. First, we evaluate unexpected events assuming "perfect foresight", where decision-makers can anticipate such events in advance. This allows us to identify dealbreakers, i.e., conditions that make the transition infeasible. Then, we assess the events under "limited foresight" to evaluate the robustness of early-stage decisions against unforeseen unexpected events and the costs associated with managing them. A case study for Belgium demonstrates that a lack of electrofuel imports in 2050 is the main dealbreaker, while accelerating the deployment of renewables is the most robust policy. Our transferable method can help policymakers identify key dealbreakers and devise robust energy transition policies.
Multi-Objective Bayesian Optimization for Networked Black-Box Systems: A Path to Greener Profits and Smarter Designs
Kudva, Akshay, Tang, Wei-Ting, Paulson, Joel A.
Designing modern industrial systems requires balancing several competing objectives, such as profitability, resilience, and sustainability, while accounting for complex interactions between technological, economic, and environmental factors. Multi-objective optimization (MOO) methods are commonly used to navigate these tradeoffs, but selecting the appropriate algorithm to tackle these problems is often unclear, particularly when system representations vary from fully equation-based (white-box) to entirely data-driven (black-box) models. While grey-box MOO methods attempt to bridge this gap, they typically impose rigid assumptions on system structure, requiring models to conform to the underlying structural assumptions of the solver rather than the solver adapting to the natural representation of the system of interest. In this chapter, we introduce a unifying approach to grey-box MOO by leveraging network representations, which provide a general and flexible framework for modeling interconnected systems as a series of function nodes that share various inputs and outputs. Specifically, we propose MOBONS, a novel Bayesian optimization-inspired algorithm that can efficiently optimize general function networks, including those with cyclic dependencies, enabling the modeling of feedback loops, recycle streams, and multi-scale simulations - features that existing methods fail to capture. Furthermore, MOBONS incorporates constraints, supports parallel evaluations, and preserves the sample efficiency of Bayesian optimization while leveraging network structure for improved scalability. We demonstrate the effectiveness of MOBONS through two case studies, including one related to sustainable process design. By enabling efficient MOO under general graph representations, MOBONS has the potential to significantly enhance the design of more profitable, resilient, and sustainable engineering systems.
Universal Semantic Embeddings of Chemical Elements for Enhanced Materials Inference and Discovery
Jia, Yunze, Xian, Yuehui, Xu, Yangyang, Dang, Pengfei, Ding, Xiangdong, Sun, Jun, Zhou, Yumei, Xue, Dezhen
We present a framework for generating universal semantic embeddings of chemical elements to advance materials inference and discovery. This framework leverages ElementBERT, a domain - specific BERT - based natural language processing model trained on 1.29 million abstracts of alloy - related scientific papers, to capture latent knowledge and contextual relationships specific to alloys. These semantic embeddings serve as robust elemental descriptors, consistently outperforming traditional empirical descriptors with significant improvements across multiple downstream tasks . These include predicting mechanical and transformation properties, classifying phase structures, and optimizing materials properties via Bayesian optimization. Applications to titanium alloys, high - entropy alloys, and shape memory alloys demonstrate up to 23% gains in prediction accuracy. Our results show that ElementBERT surpasses general - purpose BERT variants by encoding specialized alloy knowledge. By bridging contextual insights from scientific literature with quantitative inference, our framework accelerates the discovery and optimization of advanced materials, with potential applications extending beyond alloys to other material classes.
Enhancing Machine Learning Potentials through Transfer Learning across Chemical Elements
Rรถcken, Sebastien, Zavadlav, Julija
Machine Learning Potentials (MLPs) can enable simulations of ab initio accuracy at orders of magnitude lower computational cost. However, their effectiveness hinges on the availability of considerable datasets to ensure robust generalization across chemical space and thermodynamic conditions. The generation of such datasets can be labor-intensive, highlighting the need for innovative methods to train MLPs in data-scarce scenarios. Here, we introduce transfer learning of potential energy surfaces between chemically similar elements. Specifically, we leverage the trained MLP for silicon to initialize and expedite the training of an MLP for germanium. Utilizing classical force field and ab initio datasets, we demonstrate that transfer learning surpasses traditional training from scratch in force prediction, leading to more stable simulations and improved temperature transferability. These advantages become even more pronounced as the training dataset size decreases. The out-of-target property analysis shows that transfer learning leads to beneficial but sometimes adversarial effects. Our findings demonstrate that transfer learning across chemical elements is a promising technique for developing accurate and numerically stable MLPs, particularly in a data-scarce regime.
Electron flow matching for generative reaction mechanism prediction obeying conservation laws
Joung, Joonyoung F., Fong, Mun Hong, Casetti, Nicholas, Liles, Jordan P., Dassanayake, Ne S., Coley, Connor W.
Mass conservation is a fundamental principle in chemistry, servicing as a critical constraint for accurately modeling chemical reactions. Postulated by Antoine Lavoisier in the eighteenth century, it asserts that the total mass of reactants equals the total mass of products, forming the basis for stoichiometry and chemical equation balancing. Despite its simplicity and essentiality, many machine learning models trained on chemical reaction data do not inherently enforce mass conservation. In this work, we introduce a new modeling formulation for reaction outcome prediction that achieves exact conservation by modeling chemical reactivity as a generative and probabilistic process of electron redistribution. The task of reaction outcome prediction has become a popular target for supervised machine learning [1, 2]. While chemists typically conceptualize, visualize, and communicate understanding of chemical reactions through mechanistic arrow-pushing diagrams, most data-driven models bypass this formalism and focus solely on predicting the major product in an end-to-end manner.
Agentic Deep Graph Reasoning Yields Self-Organizing Knowledge Networks
We present an agentic, autonomous graph expansion framework that iteratively structures and refines knowledge in situ. Unlike conventional knowledge graph construction methods relying on static extraction or single-pass learning, our approach couples a reasoning-native large language model with a continually updated graph representation. At each step, the system actively generates new concepts and relationships, merges them into a global graph, and formulates subsequent prompts based on its evolving structure. Through this feedback-driven loop, the model organizes information into a scale-free network characterized by hub formation, stable modularity, and bridging nodes that link disparate knowledge clusters. Over hundreds of iterations, new nodes and edges continue to appear without saturating, while centrality measures and shortest path distributions evolve to yield increasingly distributed connectivity. Our analysis reveals emergent patterns, such as the rise of highly connected 'hub' concepts and the shifting influence of 'bridge' nodes, indicating that agentic, self-reinforcing graph construction can yield open-ended, coherent knowledge structures. Applied to materials design problems, we present compositional reasoning experiments by extracting node-specific and synergy-level principles to foster genuinely novel knowledge synthesis, yielding cross-domain ideas that transcend rote summarization and strengthen the framework's potential for open-ended scientific discovery. We discuss other applications in scientific discovery and outline future directions for enhancing scalability and interpretability.
PCB Renewal: Iterative Reuse of PCB Substrates for Sustainable Electronic Making
Yan, Zeyu, Vartak, Advait, Li, Jiasheng, Zhang, Zining, Peng, Huaishu
PCB (printed circuit board) substrates are often single-use, leading to material waste in electronics making. We introduce PCB Renewal, a novel technique that "erases" and "reconfigures" PCB traces by selectively depositing conductive epoxy onto outdated areas, transforming isolated paths into conductive planes that support new traces. We present the PCB Renewal workflow, evaluate its electrical performance and mechanical durability, and model its sustainability impact, including material usage, cost, energy consumption, and time savings. We develop a software plug-in that guides epoxy deposition, generates updated PCB profiles, and calculates resource usage. To demonstrate PCB Renewal's effectiveness and versatility, we repurpose a single PCB across four design iterations spanning three projects: a camera roller, a WiFi radio, and an ESPboy game console. We also show how an outsourced double-layer PCB can be reconfigured, transforming it from an LED watch to an interactive cat toy. The paper concludes with limitations and future directions.
Advanced Digital Simulation for Financial Market Dynamics: A Case of Commodity Futures
Wang, Cheng, Wang, Chuwen, Zeng, Shirong, Jiang, Changjun
March 28, 2025 Abstract After decades of evolution, the financial system has increasingly deviated from an idealized framework based on precise theorems. With the development of data science and machine intelligence, researchers are trying to digitalize and automate market prediction. However, existing methodologies struggle to represent the diversity of individuals and are regardless of the domino effects of interactions on market dynamics, leading to the poor performance facing abnormal market conditions where non-quantitative information dominates the market. To alleviate these disadvantages requires the introduction of knowledge about how non-quantitative information, like news and policy, affects market dynamics. This study investigates overcoming these challenges through rehearsing potential market trends based on the financial large language model agents whose behaviors are aligned with their cognition and analyses in markets. We propose a hierarchical knowledge architecture for financial large language model agents, integrating fine-tuned language models and specialized generators optimized for trading scenarios. For financial market, we develop an advanced interactive behavioral simulation system that enables users to configure agents and automate market simulations. In this work, we take commodity futures as an example to research the effectiveness of our methodologies. Our real-world case simulation succeeds in rehearsing abnormal market dynamics under geopolitical events and reaches an average accuracy of 3.4% across various points in time after the event on predicting futures price. Under normal market conditions, with corresponding news, our simulator also exhibits lower mean square error than series deep learning models and large language models in predicting three-day futures price of specific commodities. All experimental results demonstrate our method effectively leverages diverse information to simulate behaviors and their impact on market dynamics through systematic interaction. 1 Main The proliferation of financial derivatives in commodity markets, including forward contracts, futures, and options, has been primarily driven by the necessity for price risk mitigation. While these instruments enable investors to profit through finance, they have transformed commodity trading markets into complex human systems [1, 2, 3]. Due to its zero-sum properties, commodity futures represent a relatively straightforward segment within the financial system.
GrainPaint: A multi-scale diffusion-based generative model for microstructure reconstruction of large-scale objects
Hoffman, Nathan, Diniz, Cashen, Liu, Dehao, Rodgers, Theron, Tran, Anh, Fuge, Mark
Simulation-based approaches to microstructure generation can suffer from a variety of limitations, such as high memory usage, long computational times, and difficulties in generating complex geometries. Generative machine learning models present a way around these issues, but they have previously been limited by the fixed size of their generation area. We present a new microstructure generation methodology leveraging advances in inpainting using denoising diffusion models to overcome this generation area limitation. We show that microstructures generated with the presented methodology are statistically similar to grain structures generated with a kinetic Monte Carlo simulator, SPPARKS.* These authors contributed equally to this work.