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Bayesian inference of composition-dependent phase diagrams

arXiv.org Artificial Intelligence

Phase diagrams serve as a highly informative tool for materials design, encapsulating information about the phases that a material can manifest under specific conditions. In this work, we develop a method in which Bayesian inference is employed to combine thermodynamic data from molecular dynamics (MD), melting point simulations, and phonon calculations, process these data, and yield a temperature-concentration phase diagram. The employed Bayesian framework yields us not only the free energies of different phases as functions of temperature and concentration but also the uncertainties of these free energies originating from statistical errors inherent to finite-length MD trajectories. Furthermore, it extrapolates the results of the finite-atom calculations to the infinite-atom limit and facilitates the choice of temperature, chemical potentials, and the number of atoms conducting the next simulation with which will be the most efficient in reducing the uncertainty of the phase diagram. The developed algorithm was successfully tested on two binary systems, Ge-Si and K-Na, in the full range of concentrations and temperatures.


Gramian Angular Fields for leveraging pretrained computer vision models with anomalous diffusion trajectories

arXiv.org Artificial Intelligence

Anomalous diffusion is present at all scales, from atomic to large scales. Some exemplary systems are; ultra-cold atoms, telomeres in the nucleus of cells, moisture transport in cement-based materials, the free movement of arthropods, and the migration patterns of birds. The characterization of the diffusion gives critical information about the dynamics of these systems and provides an interdisciplinary framework with which to study diffusive transport. Thus, the problem of identifying underlying diffusive regimes and inferring the anomalous diffusion exponent {$\alpha$} with high confidence is critical to physics, chemistry, biology, and ecology. Classification and analysis of raw trajectories combining machine learning techniques with statistics extracted from them have widely been studied in the Anomalous Diffusion Challenge ge (Munoz-Gil et al., 2021). Here we present a new data-driven method for working with diffusive trajectories. This method utilizes Gramian Angular Fields (GAF) to encode one-dimensional trajectories as images (Gramian Matrices), while preserving their spatiotemporal structure for input to computer-vision models. This allows us to leverage two well-established pre-trained computer-vision models, ResNet and MobileNet, to characterize the underlying diffusive regime, and infer the anomalous diffusion exponent {$\alpha$}. Short raw trajectories, of lengths between 10 and 50, are commonly encountered in single-particle tracking experiments and are the most difficult to characterize. We show that by using GAF images, we can outperform the current state-of-the-art while increasing accessibility to machine learning methods in an applied setting.


Multi-agent Collective Construction using 3D Decomposition

arXiv.org Artificial Intelligence

This paper addresses a Multi-Agent Collective Construction (MACC) problem that aims to build a three-dimensional structure comprised of cubic blocks. We use cube-shaped robots that can carry one cubic block at a time, and move forward, reverse, left, and right to an adjacent cell of the same height or climb up and down one cube height. To construct structures taller than one cube, the robots must build supporting stairs made of blocks and remove the stairs once the structure is built. Conventional techniques solve for the entire structure at once and quickly become intractable for larger workspaces and complex structures, especially in a multi-agent setting. To this end, we present a decomposition algorithm that computes valid substructures based on intrinsic structural dependencies. We use Mixed Integer Linear Programming (MILP) to solve for each of these substructures and then aggregate the solutions to construct the entire structure. Extensive testing on 200 randomly generated structures shows an order of magnitude improvement in the solution computation time compared to an MILP approach without decomposition. Additionally, compared to Reinforcement Learning (RL) based and heuristics-based approaches drawn from the literature, our solution indicates orders of magnitude improvement in the number of pick-up and drop-off actions required to construct a structure. Furthermore, we leverage the independence between substructures to detect which sub-structures can be built in parallel. With this parallelization technique, we illustrate a further improvement in the number of time steps required to complete building the structure. This work is a step towards applying multi-agent collective construction for real-world structures by significantly reducing solution computation time with a bounded increase in the number of time steps required to build the structure.


A Smart Robotic System for Industrial Plant Supervision

arXiv.org Artificial Intelligence

In today's chemical plants, human field operators perform frequent integrity checks to guarantee high safety standards, and thus are possibly the first to encounter dangerous operating conditions. To alleviate their task, we present a system consisting of an autonomously navigating robot integrated with various sensors and intelligent data processing. It is able to detect methane leaks and estimate its flow rate, detect more general gas anomalies, recognize oil films, localize sound sources and detect failure cases, map the environment in 3D, and navigate autonomously, employing recognition and avoidance of dynamic obstacles. We evaluate our system at a wastewater facility in full working conditions. Our results demonstrate that the system is able to robustly navigate the plant and provide useful information about critical operating conditions.


Bespoke Nanoparticle Synthesis and Chemical Knowledge Discovery Via Autonomous Experimentations

arXiv.org Artificial Intelligence

The optimization of nanomaterial synthesis using numerous synthetic variables is considered to be extremely laborious task because the conventional combinatorial explorations are prohibitively expensive. In this work, we report an autonomous experimentation platform developed for the bespoke design of nanoparticles (NPs) with targeted optical properties. This platform operates in a closed-loop manner between a batch synthesis module of NPs and a UV- Vis spectroscopy module, based on the feedback of the AI optimization modeling. With silver (Ag) NPs as a representative example, we demonstrate that the Bayesian optimizer implemented with the early stopping criterion can efficiently produce Ag NPs precisely possessing the desired absorption spectra within only 200 iterations (when optimizing among five synthetic reagents). In addition to the outstanding material developmental efficiency, the analysis of synthetic variables further reveals a novel chemistry involving the effects of citrate in Ag NP synthesis. The amount of citrate is a key to controlling the competitions between spherical and plate-shaped NPs and, as a result, affects the shapes of the absorption spectra as well. Our study highlights both capabilities of the platform to enhance search efficiencies and to provide a novel chemical knowledge by analyzing datasets accumulated from the autonomous experimentations.


A Zipf's Law-based Text Generation Approach for Addressing Imbalance in Entity Extraction

arXiv.org Artificial Intelligence

Entity extraction is critical in the intelligent advancement across diverse domains. Nevertheless, a challenge to its effectiveness arises from the data imbalance. This paper proposes a novel approach by viewing the issue through the quantitative information, recognizing that entities exhibit certain levels of commonality while others are scarce, which can be reflected in the quantifiable distribution of words. The Zipf's Law emerges as a well-suited adoption, and to transition from words to entities, words within the documents are classified as common and rare ones. Subsequently, sentences are classified into common and rare ones, and are further processed by text generation models accordingly. Rare entities within the generated sentences are then labeled using human-designed rules, serving as a supplement to the raw dataset, thereby mitigating the imbalance problem. The study presents a case of extracting entities from technical documents, and experimental results from two datasets prove the effectiveness of the proposed method. Furthermore, the significance of Zipf's law in driving the progress of AI is discussed, broadening the reach and coverage of Informetrics. This paper presents a successful demonstration of extending Informetrics to interface with AI through Zipf's Law.


Low Voltage Electrohydraulic Actuators for Untethered Robotics

arXiv.org Artificial Intelligence

Rigid robots can be precise in repetitive tasks, but struggle in unstructured environments. Nature's versatility in such environments inspires researchers to develop biomimetic robots that incorporate compliant and contracting artificial muscles. Among the recently proposed artificial muscle technologies, electrohydraulic actuators are promising since they offer performance comparable to that of mammalian muscles in terms of speed and power density. However, they require high driving voltages and have safety concerns due to exposed electrodes. These high voltages lead to either bulky or inefficient driving electronics that make untethered, high-degree-of-freedom bio-inspired robots difficult to realize. Here, we present hydraulically amplified low voltage electrostatic (HALVE) actuators that match mammalian skeletal muscles in average power density (50.5 W kg-1) and peak strain rate (971 % s-1) at a driving voltage of just 1100 V. This driving voltage is approx. 5-7 times lower compared to other electrohydraulic actuators using paraelectric dielectrics. Furthermore, HALVE actuators are safe to touch, waterproof, and self-clearing, which makes them easy to implement in wearables and robotics. We characterize, model, and physically validate key performance metrics of the actuator and compare its performance to state-of-the-art electrohydraulic designs. Finally, we demonstrate the utility of our actuators on two muscle-based electrohydraulic robots: an untethered soft robotic swimmer and a robotic gripper. We foresee that HALVE actuators can become a key building block for future highly-biomimetic untethered robots and wearables with many independent artificial muscles such as biomimetic hands, faces, or exoskeletons.


Application of Zone Method based Machine Learning and Physics-Informed Neural Networks in Reheating Furnaces

arXiv.org Artificial Intelligence

Despite the high economic relevance of Foundation Industries, certain components like Reheating furnaces within their manufacturing chain are energy-intensive. Notable energy consumption reduction could be obtained by reducing the overall heating time in furnaces. Computer-integrated Machine Learning (ML) and Artificial Intelligence (AI) powered control systems in furnaces could be enablers in achieving the Net-Zero goals in Foundation Industries for sustainable manufacturing. In this work, due to the infeasibility of achieving good quality data in scenarios like reheating furnaces, classical Hottel's zone method based computational model has been used to generate data for ML and Deep Learning (DL) based model training via regression. It should be noted that the zone method provides an elegant way to model the physical phenomenon of Radiative Heat Transfer (RHT), the dominating heat transfer mechanism in high-temperature processes inside heating furnaces. Using this data, an extensive comparison among a wide range of state-of-the-art, representative ML and DL methods has been made against their temperature prediction performances in varying furnace environments. Owing to their holistic balance among inference times and model performance, DL stands out among its counterparts. To further enhance the Out-Of-Distribution (OOD) generalization capability of the trained DL models, we propose a Physics-Informed Neural Network (PINN) by incorporating prior physical knowledge using a set of novel Energy-Balance regularizers. Our setup is a generic framework, is geometry-agnostic of the 3D structure of the underlying furnace, and as such could accommodate any standard ML regression model, to serve as a Digital Twin of the underlying physical processes, for transitioning Foundation Industries towards Industry 4.0.


Simulate Time-integrated Coarse-grained Molecular Dynamics with Multi-Scale Graph Networks

arXiv.org Artificial Intelligence

Molecular dynamics (MD) simulation is essential for various scientific domains but computationally expensive. Learning-based force fields have made significant progress in accelerating ab-initio MD simulation but are not fast enough for many real-world applications due to slow inference for large systems and small time steps (femtosecond-level). We aim to address these challenges by learning a multi-scale graph neural network that directly simulates coarse-grained MD with a very large time step (nanosecond-level) and a novel refinement module based on diffusion models to mitigate simulation instability. The effectiveness of our method is demonstrated in two complex systems: single-chain coarse-grained polymers and multi-component Li-ion polymer electrolytes. For evaluation, we simulate trajectories much longer than the training trajectories for systems with different chemical compositions that the model is not trained on. Structural and dynamical properties can be accurately recovered at several orders of magnitude higher speed than classical force fields by getting out of the femtosecond regime.


Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulations

arXiv.org Artificial Intelligence

Molecular dynamics (MD) simulation techniques are widely used for various natural science applications. Increasingly, machine learning (ML) force field (FF) models begin to replace ab-initio simulations by predicting forces directly from atomic structures. Despite significant progress in this area, such techniques are primarily benchmarked by their force/energy prediction errors, even though the practical use case would be to produce realistic MD trajectories. We aim to fill this gap by introducing a novel benchmark suite for learned MD simulation. We curate representative MD systems, including water, organic molecules, a peptide, and materials, and design evaluation metrics corresponding to the scientific objectives of respective systems. We benchmark a collection of state-of-the-art (SOTA) ML FF models and illustrate, in particular, how the commonly benchmarked force accuracy is not well aligned with relevant simulation metrics. We demonstrate when and how selected SOTA methods fail, along with offering directions for further improvement. Specifically, we identify stability as a key metric for ML models to improve. Our benchmark suite comes with a comprehensive open-source codebase for training and simulation with ML FFs to facilitate future work.