The development of biological data analysis tools and large language models (LLMs) has opened up new possibilities for utilizing AI in plant science research, with the potential to contribute significantly to knowledge integration and research gap identification. Nonetheless, current LLMs struggle to handle complex biological data and theoretical models in photosynthesis research and often fail to provide accurate scientific contexts. Therefore, this study proposed a photosynthesis research assistant (PRAG) based on OpenAI's GPT-4o with retrieval-augmented generation (RAG) techniques and prompt optimization. Vector databases and an automated feedback loop were used in the prompt optimization process to enhance the accuracy and relevance of the responses to photosynthesis-related queries. PRAG showed an average improvement of 8.7% across five metrics related to scientific writing, with a 25.4% increase in source transparency. Additionally, its scientific depth and domain coverage were comparable to those of photosynthesis research papers. A knowledge graph was used to structure PRAG's responses with papers within and outside the database, which allowed PRAG to match key entities with 63% and 39.5% of the database and test papers, respectively. PRAG can be applied for photosynthesis research and broader plant science domains, paving the way for more in-depth data analysis and predictive capabilities.

AI for PDEs has garnered significant attention, particularly Physics-Informed Neural Networks (PINNs). However, PINNs are typically limited to solving specific problems, and any changes in problem conditions necessitate retraining. Therefore, we explore the generalization capability of transfer learning in the strong and energy form of PINNs across different boundary conditions, materials, and geometries. The transfer learning methods we employ include full finetuning, lightweight finetuning, and Low-Rank Adaptation (LoRA). The results demonstrate that full finetuning and LoRA can significantly improve convergence speed while providing a slight enhancement in accuracy.

This paper addresses the critical disconnect between prediction and decision quality in portfolio optimization by integrating Large Language Models (LLMs) with decision-focused learning. We demonstrate both theoretically and empirically that minimizing the prediction error alone leads to suboptimal portfolio decisions. We aim to exploit the representational power of LLMs for investment decisions. An attention mechanism processes asset relationships, temporal dependencies, and macro variables, which are then directly integrated into a portfolio optimization layer. This enables the model to capture complex market dynamics and align predictions with the decision objectives. Extensive experiments on S\&P100 and DOW30 datasets show that our model consistently outperforms state-of-the-art deep learning models. In addition, gradient-based analyses show that our model prioritizes the assets most crucial to decision making, thus mitigating the effects of prediction errors on portfolio performance. These findings underscore the value of integrating decision objectives into predictions for more robust and context-aware portfolio management.

Physics-informed neural networks (PINNs) face significant challenges in modeling multi-frequency wavefields in complex velocity models due to their slow convergence, difficulty in representing high-frequency details, and lack of generalization to varying frequencies and velocity scenarios. To address these issues, we propose Meta-LRPINN, a novel framework that combines low-rank parameterization using singular value decomposition (SVD) with meta-learning and frequency embedding. Specifically, we decompose the weights of PINN's hidden layers using SVD and introduce an innovative frequency embedding hypernetwork (FEH) that links input frequencies with the singular values, enabling efficient and frequency-adaptive wavefield representation. Meta-learning is employed to provide robust initialization, improving optimization stability and reducing training time. Additionally, we implement adaptive rank reduction and FEH pruning during the meta-testing phase to further enhance efficiency. Numerical experiments, which are presented on multi-frequency scattered wavefields for different velocity models, demonstrate that Meta-LRPINN achieves much fast convergence speed and much high accuracy compared to baseline methods such as Meta-PINN and vanilla PINN. Also, the proposed framework shows strong generalization to out-of-distribution frequencies while maintaining computational efficiency. These results highlight the potential of our Meta-LRPINN for scalable and adaptable seismic wavefield modeling.

In this manuscript, we study the learning of deep attention neural networks, defined as the composition of multiple self-attention layers, with tied and low-rank weights. We first establish a mapping of such models to sequence multi-index models, a generalization of the widely studied multi-index model to sequential covariates, for which we establish a number of general results. In the context of Bayesian-optimal learning, in the limit of large dimension $D$ and commensurably large number of samples $N$, we derive a sharp asymptotic characterization of the optimal performance as well as the performance of the best-known polynomial-time algorithm for this setting --namely approximate message-passing--, and characterize sharp thresholds on the minimal sample complexity required for better-than-random prediction performance. Our analysis uncovers, in particular, how the different layers are learned sequentially. Finally, we discuss how this sequential learning can also be observed in a realistic setup.

Many approaches to multi-robot coordination are susceptible to failure due to communication loss and uncertainty in estimation. We present a real-time communication-free distributed algorithm for navigating robots to their desired goals certified by control barrier functions, that model and control the onboard sensing behavior to keep neighbors in the limited field of view for position estimation. The approach is robust to temporary tracking loss and directly synthesizes control in real time to stabilize visual contact through control Lyapunov-barrier functions. The main contributions of this paper are a continuous-time robust trajectory generation and control method certified by control barrier functions for distributed multi-robot systems and a discrete optimization procedure, namely, MPC-CBF, to approximate the certified controller. In addition, we propose a linear surrogate of high-order control barrier function constraints and use sequential quadratic programming to solve MPC-CBF efficiently. We demonstrate results in simulation with 10 robots and physical experiments with 2 custom-built UAVs. To the best of our knowledge, this work is the first of its kind to generate a robust continuous-time trajectory and controller concurrently, certified by control barrier functions utilizing piecewise splines.

Controlling spacecraft near asteroids in deep space comes with many challenges. The delays involved necessitate heavy usage of limited onboard computation resources while fuel efficiency remains a priority to support the long loiter times needed for gathering data. Additionally, the difficulty of state determination due to the lack of traditional reference systems requires a guidance, navigation, and control (GNC) pipeline that ideally is both computationally and fuel-efficient, and that incorporates a robust state determination system. In this paper, we propose an end-to-end algorithm utilizing neural networks to generate near-optimal control commands from raw sensor data, as well as a hybrid model predictive control (MPC) guided imitation learning controller delivering improvements in computational efficiency over a traditional MPC controller.

This paper addresses the problem of both actively searching and tracking multiple unknown dynamic objects in a known environment with multiple cooperative autonomous agents with partial observability. The tracking of a target ends when the uncertainty is below a threshold. Current methods typically assume homogeneous agents without access to external information and utilize short-horizon target predictive models. Such assumptions limit real-world applications. We propose a fully integrated pipeline where the main contributions are: (1) a time-varying weighted belief representation capable of handling knowledge that changes over time, which includes external reports of varying levels of trustworthiness in addition to the agents; (2) the integration of a Long Short Term Memory-based trajectory prediction within the optimization framework for long-horizon decision-making, which reasons in time-configuration space, thus increasing responsiveness; and (3) a comprehensive system that accounts for multiple agents and enables information-driven optimization. When communication is available, our strategy consolidates exploration results collected asynchronously by agents and external sources into a headquarters, who can allocate each agent to maximize the overall team's utility, using all available information. We tested our approach extensively in simulations against baselines, and in robustness and ablation studies. In addition, we performed experiments in a 3D physics based engine robot simulator to test the applicability in the real world, as well as with real-world trajectories obtained from an oceanography computational fluid dynamics simulator. Results show the effectiveness of our method, which achieves mission completion times 1.3 to 3.2 times faster in finding all targets, even under the most challenging scenarios where the number of targets is 5 times greater than that of the agents.

This paper proposes an approach in the area of Knowledge-Guided Machine Learning (KGML) via a novel integrated framework comprising CNN (Convolutional Neural Networks) and ViT (Vision Transformers) along with GIS (Geographic Information Systems) to enhance power plant classification in the context of energy management. Knowledge from geoinformatics derived through Spatial Masks (SM) in GIS is infused into an architecture of CNN and ViT, in this proposed KGML approach. It is found to provide much better performance compared to the baseline of CNN and ViT only in the classification of multiple types of power plants from real satellite imagery, hence emphasizing the vital role of the geoinformatics-guided approach. This work makes a contribution to the main theme of KGML that can be beneficial in many AI systems today. It makes broader impacts on AI in Smart Cities, and Environmental Computing.

Uncertainty quantification in time series prediction is challenging due to the temporal dependence and distribution shift on sequential data. Conformal inference provides a pivotal and flexible instrument for assessing the uncertainty of machine learning models through prediction sets. Recently, a series of online conformal inference methods updated thresholds of prediction sets by performing online gradient descent on a sequence of quantile loss functions. A drawback of such methods is that they only use the information of revealed non-conformity scores via miscoverage indicators but ignore error quantification, namely the distance between the non-conformity score and the current threshold. To accurately leverage the dynamic of miscoverage error, we propose Error-quantified Conformal Inference (ECI) by smoothing the quantile loss function. ECI introduces a continuous and adaptive feedback scale with the miscoverage error, rather than simple binary feedback in existing methods. We establish a long-term coverage guarantee for ECI under arbitrary dependence and distribution shift. The extensive experimental results show that ECI can achieve valid miscoverage control and output tighter prediction sets than other baselines. Uncertainty quantification for time series is crucial across various domains including finance, climate science, epidemiology, energy, supply chains, and macroeconomics, etc, especially in highstakes areas.