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Venture: a higher-order probabilistic programming platform with programmable inference

arXiv.org Machine Learning

We describe Venture, an interactive virtual machine for probabilistic programming that aims to be sufficiently expressive, extensible, and efficient for general-purpose use. Like Church, probabilistic models and inference problems in Venture are specified via a Turing-complete, higher-order probabilistic language descended from Lisp. Unlike Church, Venture also provides a compositional language for custom inference strategies built out of scalable exact and approximate techniques. We also describe four key aspects of Venture's implementation that build on ideas from probabilistic graphical models. First, we describe the stochastic procedure interface (SPI) that specifies and encapsulates primitive random variables. The SPI supports custom control flow, higher-order probabilistic procedures, partially exchangeable sequences and ``likelihood-free'' stochastic simulators. It also supports external models that do inference over latent variables hidden from Venture. Second, we describe probabilistic execution traces (PETs), which represent execution histories of Venture programs. PETs capture conditional dependencies, existential dependencies and exchangeable coupling. Third, we describe partitions of execution histories called scaffolds that factor global inference problems into coherent sub-problems. Finally, we describe a family of stochastic regeneration algorithms for efficiently modifying PET fragments contained within scaffolds. Stochastic regeneration linear runtime scaling in cases where many previous approaches scaled quadratically. We show how to use stochastic regeneration and the SPI to implement general-purpose inference strategies such as Metropolis-Hastings, Gibbs sampling, and blocked proposals based on particle Markov chain Monte Carlo and mean-field variational inference techniques.


Beyond L2-Loss Functions for Learning Sparse Models

arXiv.org Machine Learning

Incorporating sparsity priors in learning tasks can give rise to simple, and interpretable models for complex high dimensional data. Sparse models have found widespread use in structure discovery, recovering data from corruptions, and a variety of large scale unsupervised and supervised learning problems. Assuming the availability of sufficient data, these methods infer dictionaries for sparse representations by optimizing for high-fidelity reconstruction. In most scenarios, the reconstruction quality is measured using the squared Euclidean distance, and efficient algorithms have been developed for both batch and online learning cases. However, new application domains motivate looking beyond conventional loss functions. For example, robust loss functions such as $\ell_1$ and Huber are useful in learning outlier-resilient models, and the quantile loss is beneficial in discovering structures that are the representative of a particular quantile. These new applications motivate our work in generalizing sparse learning to a broad class of convex loss functions. In particular, we consider the class of piecewise linear quadratic (PLQ) cost functions that includes Huber, as well as $\ell_1$, quantile, Vapnik, hinge loss, and smoothed variants of these penalties. We propose an algorithm to learn dictionaries and obtain sparse codes when the data reconstruction fidelity is measured using any smooth PLQ cost function. We provide convergence guarantees for the proposed algorithm, and demonstrate the convergence behavior using empirical experiments. Furthermore, we present three case studies that require the use of PLQ cost functions: (i) robust image modeling, (ii) tag refinement for image annotation and retrieval and (iii) computing empirical confidence limits for subspace clustering.


Working with Friends: Unveiling Working Affinity Features from Facebook Data

AAAI Conferences

College students often have to team up for classprojects, and they select each other based not only onpast performance (e.g., grades) but also on whetherthey get along (e.g., whether they trust each other).There has not been any study on the relationshipbetween team formation for class projects and socialmedia. To fix that, we ask a group of university studentsto tell us with whom they wish to work, gather theironline Facebook data, and test the predictors of teamformation. We find that self-organized selection ofteam members does not strongly depend on pastgrades but rather on Facebook-derived proxies fortie strength, popularity, and homophily. These resultshave important theoretical implications for the teamformation literature and practical implications foronline educational platforms.


The Gaussian Radon Transform and Machine Learning

arXiv.org Machine Learning

There has been growing recent interest in probabilistic interpretations of kernel-based methods as well as learning in Banach spaces. The absence of a useful Lebesgue measure on an infinite-dimensional reproducing kernel Hilbert space is a serious obstacle for such stochastic models. We propose an estimation model for the ridge regression problem within the framework of abstract Wiener spaces and show how the support vector machine solution to such problems can be interpreted in terms of the Gaussian Radon transform.


Active Learning for Autonomous Intelligent Agents: Exploration, Curiosity, and Interaction

arXiv.org Artificial Intelligence

In this survey we present different approaches that allow an intelligent agent to explore autonomous its environment to gather information and learn multiple tasks. Different communities proposed different solutions, that are in many cases, similar and/or complementary. These solutions include active learning, exploration/exploitation, online-learning and social learning. The common aspect of all these approaches is that it is the agent to selects and decides what information to gather next. Applications for these approaches already include tutoring systems, autonomous grasping learning, navigation and mapping and human-robot interaction. We discuss how these approaches are related, explaining their similarities and their differences in terms of problem assumptions and metrics of success. We consider that such an integrated discussion will improve inter-disciplinary research and applications.


Retrieval of Experiments with Sequential Dirichlet Process Mixtures in Model Space

arXiv.org Machine Learning

We address the problem of retrieving relevant experiments given a query experiment, motivated by the public databases of datasets in molecular biology and other experimental sciences, and the need of scientists to relate to earlier work on the level of actual measurement data. Since experiments are inherently noisy and databases ever accumulating, we argue that a retrieval engine should possess two particular characteristics. First, it should compare models learnt from the experiments rather than the raw measurements themselves: this allows incorporating experiment-specific prior knowledge to suppress noise effects and focus on what is important. Second, it should be updated sequentially from newly published experiments, without explicitly storing either the measurements or the models, which is critical for saving storage space and protecting data privacy: this promotes life long learning. We formulate the retrieval as a ``supermodelling'' problem, of sequentially learning a model of the set of posterior distributions, represented as sets of MCMC samples, and suggest the use of Particle-Learning-based sequential Dirichlet process mixture (DPM) for this purpose. The relevance measure for retrieval is derived from the supermodel through the mixture representation. We demonstrate the performance of the proposed retrieval method on simulated data and molecular biological experiments.


Bayesian Multi-Scale Optimistic Optimization

arXiv.org Machine Learning

Bayesian optimization is a powerful global optimization technique for expensive black-box functions. One of its shortcomings is that it requires auxiliary optimization of an acquisition function at each iteration. This auxiliary optimization can be costly and very hard to carry out in practice. Moreover, it creates serious theoretical concerns, as most of the convergence results assume that the exact optimum of the acquisition function can be found. In this paper, we introduce a new technique for efficient global optimization that combines Gaussian process confidence bounds and treed simultaneous optimistic optimization to eliminate the need for auxiliary optimization of acquisition functions. The experiments with global optimization benchmarks and a novel application to automatic information extraction demonstrate that the resulting technique is more efficient than the two approaches from which it draws inspiration. Unlike most theoretical analyses of Bayesian optimization with Gaussian processes, our finite-time convergence rate proofs do not require exact optimization of an acquisition function. That is, our approach eliminates the unsatisfactory assumption that a difficult, potentially NP-hard, problem has to be solved in order to obtain vanishing regret rates.


Le Cam meets LeCun: Deficiency and Generic Feature Learning

arXiv.org Machine Learning

"Deep Learning" methods attempt to learn generic features in an unsupervised fashion from a large unlabelled data set. These generic features should perform as well as the best hand crafted features for any learning problem that makes use of this data. We provide a definition of generic features, characterize when it is possible to learn them and provide algorithms closely related to the deep belief network and autoencoders of deep learning. In order to do so we use the notion of deficiency distance and illustrate its value in studying certain general learning problems.


Continuous Learning: Engineering Super Features With Feature Algebras

arXiv.org Machine Learning

In this paper we consider a problem of searching a space of predictive models for a given training data set. We propose an iterative procedure for deriving a sequence of improving models and a corresponding sequence of sets of non-linear features on the original input space. After a finite number of iterations N, the non-linear features become 2^N -degree polynomials on the original space. We show that in a limit of an infinite number of iterations derived non-linear features must form an associative algebra: a product of two features is equal to a linear combination of features from the same feature space for any given input point. Because each iteration consists of solving a series of convex problems that contain all previous solutions, the likelihood of the models in the sequence is increasing with each iteration while the dimension of the model parameter space is set to a limited controlled value.


A Survey on Metric Learning for Feature Vectors and Structured Data

arXiv.org Machine Learning

The need for appropriate ways to measure the distance or similarity between data is ubiquitous in machine learning, pattern recognition and data mining, but handcrafting such good metrics for specific problems is generally difficult. This has led to the emergence of metric learning, which aims at automatically learning a metric from data and has attracted a lot of interest in machine learning and related fields for the past ten years. This survey paper proposes a systematic review of the metric learning literature, highlighting the pros and cons of each approach. We pay particular attention to Mahalanobis distance metric learning, a well-studied and successful framework, but additionally present a wide range of methods that have recently emerged as powerful alternatives, including nonlinear metric learning, similarity learning and local metric learning. Recent trends and extensions, such as semi-supervised metric learning, metric learning for histogram data and the derivation of generalization guarantees, are also covered. Finally, this survey addresses metric learning for structured data, in particular edit distance learning, and attempts to give an overview of the remaining challenges in metric learning for the years to come.