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BRAIxDet: Learning to Detect Malignant Breast Lesion with Incomplete Annotations

arXiv.org Artificial Intelligence

Methods to detect malignant lesions from screening mammograms are usually trained with fully annotated datasets, where images are labelled with the localisation and classification of cancerous lesions. However, real-world screening mammogram datasets commonly have a subset that is fully annotated and another subset that is weakly annotated with just the global classification (i.e., without lesion localisation). Given the large size of such datasets, researchers usually face a dilemma with the weakly annotated subset: to not use it or to fully annotate it. The first option will reduce detection accuracy because it does not use the whole dataset, and the second option is too expensive given that the annotation needs to be done by expert radiologists. In this paper, we propose a middle-ground solution for the dilemma, which is to formulate the training as a weakly- and semi-supervised learning problem that we refer to as malignant breast lesion detection with incomplete annotations. To address this problem, our new method comprises two stages, namely: 1) pre-training a multi-view mammogram classifier with weak supervision from the whole dataset, and 2) extending the trained classifier to become a multi-view detector that is trained with semi-supervised student-teacher learning, where the training set contains fully and weakly-annotated mammograms. We provide extensive detection results on two real-world screening mammogram datasets containing incomplete annotations, and show that our proposed approach achieves state-of-the-art results in the detection of malignant breast lesions with incomplete annotations.


A Survey of Active Learning for Natural Language Processing

arXiv.org Artificial Intelligence

In this work, we provide a literature review of active learning (AL) for its applications in natural language processing (NLP). In addition to a fine-grained categorization of query strategies, we also investigate several other important aspects of applying AL to NLP problems. These include AL for structured prediction tasks, annotation cost, model learning (especially Figure 1: Counts of AL (left) and "neural" (right) papers with deep neural models), and starting in the ACL Anthology over the past twenty years.


Generalized Uncertainty of Deep Neural Networks: Taxonomy and Applications

arXiv.org Artificial Intelligence

Deep neural networks have seen enormous success in various real-world applications. Beyond their predictions as point estimates, increasing attention has been focused on quantifying the uncertainty of their predictions. In this review, we show that the uncertainty of deep neural networks is not only important in a sense of interpretability and transparency, but also crucial in further advancing their performance, particularly in learning systems seeking robustness and efficiency. We will generalize the definition of the uncertainty of deep neural networks to any number or vector that is associated with an input or an input-label pair, and catalog existing methods on ``mining'' such uncertainty from a deep model. We will include those methods from the classic field of uncertainty quantification as well as those methods that are specific to deep neural networks. We then show a wide spectrum of applications of such generalized uncertainty in realistic learning tasks including robust learning such as noisy learning, adversarially robust learning; data-efficient learning such as semi-supervised and weakly-supervised learning; and model-efficient learning such as model compression and knowledge distillation.


Revisiting Intermediate Layer Distillation for Compressing Language Models: An Overfitting Perspective

arXiv.org Artificial Intelligence

Knowledge distillation (KD) is a highly promising method for mitigating the computational problems of pre-trained language models (PLMs). Among various KD approaches, Intermediate Layer Distillation (ILD) has been a de facto standard KD method with its performance efficacy in the NLP field. In this paper, we find that existing ILD methods are prone to overfitting to training datasets, although these methods transfer more information than the original KD. Next, we present the simple observations to mitigate the overfitting of ILD: distilling only the last Transformer layer and conducting ILD on supplementary tasks. Based on our two findings, we propose a simple yet effective consistency-regularized ILD (CR-ILD), which prevents the student model from overfitting the training dataset. Substantial experiments on distilling BERT on the GLUE benchmark and several synthetic datasets demonstrate that our proposed ILD method outperforms other KD techniques. Our code is available at https://github.com/jongwooko/CR-ILD.


Pseudonorm Approachability and Applications to Regret Minimization

arXiv.org Artificial Intelligence

Blackwell's celebrated approachability theory provides a general framework for a variety of learning problems, including regret minimization. However, Blackwell's proof and implicit algorithm measure approachability using the $\ell_2$ (Euclidean) distance. We argue that in many applications such as regret minimization, it is more useful to study approachability under other distance metrics, most commonly the $\ell_\infty$-metric. But, the time and space complexity of the algorithms designed for $\ell_\infty$-approachability depend on the dimension of the space of the vectorial payoffs, which is often prohibitively large. Thus, we present a framework for converting high-dimensional $\ell_\infty$-approachability problems to low-dimensional pseudonorm approachability problems, thereby resolving such issues. We first show that the $\ell_\infty$-distance between the average payoff and the approachability set can be equivalently defined as a pseudodistance between a lower-dimensional average vector payoff and a new convex set we define. Next, we develop an algorithmic theory of pseudonorm approachability, analogous to previous work on approachability for $\ell_2$ and other norms, showing that it can be achieved via online linear optimization (OLO) over a convex set given by the Fenchel dual of the unit pseudonorm ball. We then use that to show, modulo mild normalization assumptions, that there exists an $\ell_\infty$-approachability algorithm whose convergence is independent of the dimension of the original vectorial payoff. We further show that that algorithm admits a polynomial-time complexity, assuming that the original $\ell_\infty$-distance can be computed efficiently. We also give an $\ell_\infty$-approachability algorithm whose convergence is logarithmic in that dimension using an FTRL algorithm with a maximum-entropy regularizer.


Symbolic Physics Learner: Discovering governing equations via Monte Carlo tree search

arXiv.org Artificial Intelligence

Nonlinear dynamics is ubiquitous in nature and commonly seen in various science and engineering disciplines. Distilling analytical expressions that govern nonlinear dynamics from limited data remains vital but challenging. To tackle this fundamental issue, we propose a novel Symbolic Physics Learner (SPL) machine to discover the mathematical structure of nonlinear dynamics. The key concept is to interpret mathematical operations and system state variables by computational rules and symbols, establish symbolic reasoning of mathematical formulas via expression trees, and employ a Monte Carlo tree search (MCTS) agent to explore optimal expression trees based on measurement data. The MCTS agent obtains an optimistic selection policy through the traversal of expression trees, featuring the one that maps to the arithmetic expression of underlying physics. Salient features of the proposed framework include search flexibility and enforcement of parsimony for discovered equations. The efficacy and superiority of the SPL machine are demonstrated by numerical examples, compared with state-of-the-art baselines.


Predefined domain specific embeddings of food concepts and recipes: A case study on heterogeneous recipe datasets

arXiv.org Artificial Intelligence

Although recipe data are very easy to come by nowadays, it is really hard to find a complete recipe dataset - with a list of ingredients, nutrient values per ingredient, and per recipe, allergens, etc. Recipe datasets are usually collected from social media websites where users post and publish recipes. Usually written with little to no structure, using both standardized and non-standardized units of measurement. We collect six different recipe datasets, publicly available, in different formats, and some including data in different languages. Bringing all of these datasets to the needed format for applying a machine learning (ML) pipeline for nutrient prediction [1], [2], includes data normalization using dictionary-based named entity recognition (NER), rule-based NER, as well as conversions using external domain-specific resources. From the list of ingredients, domain-specific embeddings are created using the same embedding space for all recipes - one ingredient dataset is generated. The result from this normalization process is two corpora - one with predefined ingredient embeddings and one with predefined recipe embeddings. On all six recipe datasets, the ML pipeline is evaluated. The results from this use case also confirm that the embeddings merged using the domain heuristic yield better results than the baselines.


Keyword Assisted Topic Models

arXiv.org Artificial Intelligence

The unsupervised nature of the models makes them suitable for exploring topics in a corpus without prior knowledge. However, researchers find that these models often fail to measure specific concepts of substantive interest by inadvertently creating multiple topics with similar content and combining distinct themes into a single topic. In this paper, we empirically demonstrate that providing a small number of keywords can substantially enhance the measurement performance of topic models. An important advantage of the proposed keyword assisted topic model (keyATM) is that the specification of keywords requires researchers to label topics prior to fitting a model to the data. This contrasts with a widespread practice of post-hoc topic interpretation and adjustments that compromises the objectivity of empirical findings. In our application, we find that keyATM provides more interpretable results, has better document classification performance, and is less sensitive to the number of topics than the standard topic models. Finally, we show that keyATM can also incorporate covariates and model time trends. An open-source software package is available for implementing the proposed methodology. Verification Materials: The data and materials required to verify the computational reproducibility of the results, procedures and analyses in this article are available on the American Journal of Political Science Dataverse within the Harvard Dataverse Network, at: https://doi.org/10.7910/DVN/RKNNVL


"John is 50 years old, can his son be 65?" Evaluating NLP Models' Understanding of Feasibility

arXiv.org Artificial Intelligence

In current NLP research, large-scale language models and their abilities are widely being discussed. Some recent works have also found notable failures of these models. Often these failure examples involve complex reasoning abilities. This work focuses on a simple commonsense ability, reasoning about when an action (or its effect) is feasible. To this end, we introduce FeasibilityQA, a question-answering dataset involving binary classification (BCQ) and multi-choice multi-correct questions (MCQ) that test understanding of feasibility. We show that even state-of-the-art models such as GPT-3, GPT-2, and T5 struggle to answer the feasibility questions correctly. Specifically, on MCQ and BCQ questions, GPT-3 achieves an accuracy of just (19%, 62%) and (25%, 64%) in zero-shot and few-shot settings, respectively. We also evaluate models by providing relevant knowledge statements required to answer the question. We find that the additional knowledge leads to a 7% gain in performance, but the overall performance still remains low. These results make one wonder how much commonsense knowledge about action feasibility is encoded in state-of-the-art models and how well they can reason about it.


Hypothesis Testing and Machine Learning: Interpreting Variable Effects in Deep Artificial Neural Networks using Cohen's f2

arXiv.org Machine Learning

Deep artificial neural networks show high predictive performance in many fields, but they do not afford statistical inferences and their black-box operations are too complicated for humans to comprehend. Because positing that a relationship exists is often more important than prediction in scientific experiments and research models, machine learning is far less frequently used than inferential statistics. Additionally, statistics calls for improving the test of theory by showing the magnitude of the phenomena being studied. This article extends current XAI methods and develops a model agnostic hypothesis testing framework for machine learning. First, Fisher's variable permutation algorithm is tweaked to compute an effect size measure equivalent to Cohen's f2 for OLS regression models. Second, the Mann-Kendall test of monotonicity and the Theil-Sen estimator is applied to Apley's accumulated local effect plots to specify a variable's direction of influence and statistical significance. The usefulness of this approach is demonstrated on an artificial data set and a social survey with a Python sandbox implementation.