In most gene expression data, the number of training samples is very small compared to the large number of genes involved in the experiments. However, among the large amount of genes, only a small fraction is effective for performing a certain task. Furthermore, a small subset of genes is desirable in developing gene expression based diagnostic tools for delivering reliable and understandable results. With the gene selection results, the cost of biological experiment and decision can be greatly reduced by analyzing only the marker genes. An important application of gene expression data in functional genomics is to classify samples according to their gene expression profiles. Feature selection (FS) is a process which attempts to select more informative features. It is one of the important steps in knowledge discovery. Conventional supervised FS methods evaluate various feature subsets using an evaluation function or metric to select only those features which are related to the decision classes of the data under consideration. This paper studies a feature selection method based on rough set theory. Further K-Means, Fuzzy C-Means (FCM) algorithm have implemented for the reduced feature set without considering class labels. Then the obtained results are compared with the original class labels. Back Propagation Network (BPN) has also been used for classification. Then the performance of K-Means, FCM, and BPN are analyzed through the confusion matrix. It is found that the BPN is performing well comparatively.

A mean function in reproducing kernel Hilbert space, or a kernel mean, is an important part of many applications ranging from kernel principal component analysis to Hilbert-space embedding of distributions. Given finite samples, an empirical average is the standard estimate for the true kernel mean. We show that this estimator can be improved via a well-known phenomenon in statistics called Stein's phenomenon. After consideration, our theoretical analysis reveals the existence of a wide class of estimators that are better than the standard. Focusing on a subset of this class, we propose efficient shrinkage estimators for the kernel mean. Empirical evaluations on several benchmark applications clearly demonstrate that the proposed estimators outperform the standard kernel mean estimator.

Latent Gaussian models (LGMs) are widely used in statistics and machine learning. Bayesian inference in non-conjugate LGMs is difficult due to intractable integrals involving the Gaussian prior and non-conjugate likelihoods. Algorithms based on variational Gaussian (VG) approximations are widely employed since they strike a favorable balance between accuracy, generality, speed, and ease of use. However, the structure of the optimization problems associated with these approximations remains poorly understood, and standard solvers take too long to converge. We derive a novel dual variational inference approach that exploits the convexity property of the VG approximations. We obtain an algorithm that solves a convex optimization problem, reduces the number of variational parameters, and converges much faster than previous methods. Using real-world data, we demonstrate these advantages on a variety of LGMs, including Gaussian process classification, and latent Gaussian Markov random fields.

Many clustering models rely on the minimization of an energy over possible partitions of the data set. These discrete optimizations usually pose NPhard problems, however. A natural resolution of this issue involves relaxing the discrete minimization space into a continuous one to obtain an easier minimization procedure. Many current algorithms, such as spectral clustering methods or nonnegative matrix factorization (NMF) methods, follow this relaxation approach. A fundamental problem arises when using this approach, however; in general the solution of the relaxed continuous problem and that of the discrete NPhard problem can differ substantially.

We show an efficient algorithm for the following problem: Given uniformly random points from an arbitrary n-dimensional simplex, estimate the simplex. The size of the sample and the number of arithmetic operations of our algorithm are polynomial in n. This answers a question of Frieze, Jerrum and Kannan [FJK]. Our result can also be interpreted as efficiently learning the intersection of n+1 half-spaces in R^n in the model where the intersection is bounded and we are given polynomially many uniform samples from it. Our proof uses the local search technique from Independent Component Analysis (ICA), also used by [FJK]. Unlike these previous algorithms, which were based on analyzing the fourth moment, ours is based on the third moment. We also show a direct connection between the problem of learning a simplex and ICA: a simple randomized reduction to ICA from the problem of learning a simplex. The connection is based on a known representation of the uniform measure on a simplex. Similar representations lead to a reduction from the problem of learning an affine transformation of an n-dimensional l_p ball to ICA.

We aim to reduce the burden of programming and deploying autonomous systems to work in concert with people in time-critical domains, such as military field operations and disaster response. Deployment plans for these operations are frequently negotiated on-the-fly by teams of human planners. A human operator then translates the agreed upon plan into machine instructions for the robots. We present an algorithm that reduces this translation burden by inferring the final plan from a processed form of the human team's planning conversation. Our approach combines probabilistic generative modeling with logical plan validation used to compute a highly structured prior over possible plans. This hybrid approach enables us to overcome the challenge of performing inference over the large solution space with only a small amount of noisy data from the team planning session. We validate the algorithm through human subject experimentation and show we are able to infer a human team's final plan with 83% accuracy on average. We also describe a robot demonstration in which two people plan and execute a first-response collaborative task with a PR2 robot. To the best of our knowledge, this is the first work that integrates a logical planning technique within a generative model to perform plan inference.

We study the problem of learning with label proportions in which the training data is provided in groups and only the proportion of each class in each group is known. We propose a new method called proportion-SVM, or $\propto$SVM, which explicitly models the latent unknown instance labels together with the known group label proportions in a large-margin framework. Unlike the existing works, our approach avoids making restrictive assumptions about the data. The $\propto$SVM model leads to a non-convex integer programming problem. In order to solve it efficiently, we propose two algorithms: one based on simple alternating optimization and the other based on a convex relaxation. Extensive experiments on standard datasets show that $\propto$SVM outperforms the state-of-the-art, especially for larger group sizes.

We propose a technique for increasing the efficiency of gradient-based inference and learning in Bayesian networks with multiple layers of continuous latent vari- ables. We show that, in many cases, it is possible to express such models in an auxiliary form, where continuous latent variables are conditionally deterministic given their parents and a set of independent auxiliary variables. Variables of mod- els in this auxiliary form have much larger Markov blankets, leading to significant speedups in gradient-based inference, e.g. rapid mixing Hybrid Monte Carlo and efficient gradient-based optimization. The relative efficiency is confirmed in ex- periments.

Optimal transportation distances are a fundamental family of parameterized distances for histograms. Despite their appealing theoretical properties, excellent performance in retrieval tasks and intuitive formulation, their computation involves the resolution of a linear program whose cost is prohibitive whenever the histograms' dimension exceeds a few hundreds. We propose in this work a new family of optimal transportation distances that look at transportation problems from a maximum-entropy perspective. We smooth the classical optimal transportation problem with an entropic regularization term, and show that the resulting optimum is also a distance which can be computed through Sinkhorn-Knopp's matrix scaling algorithm at a speed that is several orders of magnitude faster than that of transportation solvers. We also report improved performance over classical optimal transportation distances on the MNIST benchmark problem.

Online learning with delayed feedback has received increasing attention recently due to its several applications in distributed, web-based learning problems. In this paper we provide a systematic study of the topic, and analyze the effect of delay on the regret of online learning algorithms. Somewhat surprisingly, it turns out that delay increases the regret in a multiplicative way in adversarial problems, and in an additive way in stochastic problems. We give meta-algorithms that transform, in a black-box fashion, algorithms developed for the non-delayed case into ones that can handle the presence of delays in the feedback loop. Modifications of the well-known UCB algorithm are also developed for the bandit problem with delayed feedback, with the advantage over the meta-algorithms that they can be implemented with lower complexity.