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Sparse principal component regression with adaptive loading

arXiv.org Machine Learning

Principal component analysis (PCA) (Jolliffe, 2002) is a fundamental statistical tool for dimensionality reduction, data processing, and visualization of multiv ariate data, with various applications in biology, engineering, and social science. In re gression analysis, it can be useful to replace many original explanatory variables with a f ew principal components, which is called the principal component regression (PCR) (Ma ssy, 1965; Jolliffe, 1982). PCR is widely used in various fields of research and many exten sions of PCR have been proposed (see, e.g., Hartnett et al., 1998; Rosital et al., 2001; Reiss and Ogden, 2007; Wang and Abbott, 2008). Whereas PCR is a useful tool for analyzin g multivariate data, this method may not have enough prediction accuracy if the respon se variable depends on the principal components with small eigenvalues. The problem arises from the two-stage procedure for PCR; a few principal components are selected with la rge eigenvalues, but without any relation to response variable, and then the regression model is constructed using them as new explanatory variables. In this paper, we deal with PCA and regression analysis simultaneous ly, and propose a one-stage procedure for PCR to address this problem. The proc edure combines two loss functions; one is the ordinary regression analysis loss and the othe r is PCA loss with some devices proposed by Zou et al. (2006).


Estimating the Accuracies of Multiple Classifiers Without Labeled Data

arXiv.org Machine Learning

In various situations one is given only the predictions of multiple classifiers over a large unlabeled test data. This scenario raises the following questions: Without any labeled data and without any a-priori knowledge about the reliability of these different classifiers, is it possible to consistently and computationally efficiently estimate their accuracies? Furthermore, also in a completely unsupervised manner, can one construct a more accurate unsupervised ensemble classifier? In this paper, focusing on the binary case, we present simple, computationally efficient algorithms to solve these questions. Furthermore, under standard classifier independence assumptions, we prove our methods are consistent and study their asymptotic error. Our approach is spectral, based on the fact that the off-diagonal entries of the classifiers' covariance matrix and 3-d tensor are rank-one. We illustrate the competitive performance of our algorithms via extensive experiments on both artificial and real datasets.


Robust sketching for multiple square-root LASSO problems

arXiv.org Machine Learning

In many practical applications, learning tasks arise not in isolation, but as multiple instances of similar problems. A typical instance is when the same problem has to be solved, but with many different values of a regularization parameter. Cross-validation also involves a set of learning problems where the different "design matrices" are very close to each other, all being a low-rank perturbation of the same data matrix. Other examples of such multiple instances arise in sparse inverse covariance estimation with the LASSO (Friedman et al. (2008)), or in robust subspace clustering (Soltanolkotabi et al. (2014)). In such applications, it makes sense to spend processing time on the common part of the problems, in order to compress it in certain way, and speed up the overall computation. In this paper we propose an approach to multiple-instance square root LASSO based on "robust sketching", where the data matrix of an optimization problem is approximated by a sketch, that is, a simpler matrix that preserves some property of interest, and on which computations can be performed much faster 1


An ensemble-based system for automatic screening of diabetic retinopathy

arXiv.org Machine Learning

In this paper, an ensemble-based method for the screening of diabetic retinopathy (DR) is proposed. This approach is based on features extracted from the output of several retinal image processing algorithms, such as image-level (quality assessment, pre-screening, AM/FM), lesion-specific (microaneurysms, exudates) and anatomical (macula, optic disc) components. The actual decision about the presence of the disease is then made by an ensemble of machine learning classifiers. We have tested our approach on the publicly available Messidor database, where 90% sensitivity, 91% specificity and 90% accuracy and 0.989 AUC are achieved in a disease/no-disease setting. These results are highly competitive in this field and suggest that retinal image processing is a valid approach for automatic DR screening.


A random forest system combination approach for error detection in digital dictionaries

arXiv.org Machine Learning

When digitizing a print bilingual dictionary, whether via optical character recognition or manual entry, it is inevitable that errors are introduced into the electronic version that is created. We investigate automating the process of detecting errors in an XML representation of a digitized print dictionary using a hybrid approach that combines rule-based, feature-based, and language model-based methods. We investigate combining methods and show that using random forests is a promising approach. We find that in isolation, unsupervised methods rival the performance of supervised methods. Random forests typically require training data so we investigate how we can apply random forests to combine individual base methods that are themselves unsupervised without requiring large amounts of training data. Experiments reveal empirically that a relatively small amount of data is sufficient and can potentially be further reduced through specific selection criteria.


On Estimating $L_2^2$ Divergence

arXiv.org Machine Learning

We give a comprehensive theoretical characterization of a nonparametric estimator for the $L_2^2$ divergence between two continuous distributions. We first bound the rate of convergence of our estimator, showing that it is $\sqrt{n}$-consistent provided the densities are sufficiently smooth. In this smooth regime, we then show that our estimator is asymptotically normal, construct asymptotic confidence intervals, and establish a Berry-Ess\'{e}en style inequality characterizing the rate of convergence to normality. We also show that this estimator is minimax optimal.


Causal Inference through a Witness Protection Program

arXiv.org Machine Learning

One of the most fundamental problems in causal inference is the estimation of a causal effect when variables are confounded. This is difficult in an observational study, because one has no direct evidence that all confounders have been adjusted for. We introduce a novel approach for estimating causal effects that exploits observational conditional independencies to suggest "weak" paths in a unknown causal graph. The widely used faithfulness condition of Spirtes et al. is relaxed to allow for varying degrees of "path cancellations" that imply conditional independencies but do not rule out the existence of confounding causal paths. The outcome is a posterior distribution over bounds on the average causal effect via a linear programming approach and Bayesian inference. We claim this approach should be used in regular practice along with other default tools in observational studies.


A Comparison of learning algorithms on the Arcade Learning Environment

arXiv.org Artificial Intelligence

Reinforcement learning agents have traditionally been evaluated on small toy problems. With advances in computing power and the advent of the Arcade Learning Environment, it is now possible to evaluate algorithms on diverse and difficult problems within a consistent framework. We discuss some challenges posed by the arcade learning environment which do not manifest in simpler environments. We then provide a comparison of model-free, linear learning algorithms on this challenging problem set.


An Ensemble-based System for Microaneurysm Detection and Diabetic Retinopathy Grading

arXiv.org Artificial Intelligence

Reliable microaneurysm detection in digital fundus images is still an open issue in medical image processing. We propose an ensemble-based framework to improve microaneurysm detection. Unlike the well-known approach of considering the output of multiple classifiers, we propose a combination of internal components of microaneurysm detectors, namely preprocessing methods and candidate extractors. We have evaluated our approach for microaneurysm detection in an online competition, where this algorithm is currently ranked as first and also on two other databases. Since microaneurysm detection is decisive in diabetic retinopathy grading, we also tested the proposed method for this task on the publicly available Messidor database, where a promising AUC 0.90 with 0.01 uncertainty is achieved in a 'DR/non-DR'-type classification based on the presence or absence of the microaneurysms.


Tasks that Require, or can Benefit from, Matching Blank Nodes

arXiv.org Artificial Intelligence

In various domains and cases, we observe the creation and usage of information elements which are unnamed. Such elements do not have a name, or may have a name that is not externally referable (usually meaningless and not persistent over time). This paper discusses why we will never `escape' from the problem of having to construct mappings between such unnamed elements in information systems. Since unnamed elements nowadays occur very often in the framework of the Semantic Web and Linked Data as blank nodes, the paper describes scenarios that can benefit from methods that compute mappings between the unnamed elements. For each scenario, the corresponding bnode matching problem is formally defined. Based on this analysis, we try to reach to more a general formulation of the problem, which can be useful for guiding the required technological advances. To this end, the paper finally discusses methods to realize blank node matching, the implementations that exist, and identifies open issues and challenges.