Recently, machine learning techniques especially predictive modeling and pattern recognition in biomedical sciences from drug delivery system to medical imaging has become one of the important methods which are assisting researchers to have deeper understanding of entire issue and to solve complex medical problems. Deep learning is a powerful machine learning algorithm in classification while extracting low to high-level features. In this paper, we used convolutional neural network to classify Alzheimer's brain from normal healthy brain. The importance of classifying this kind of medical data is to potentially develop a predict model or system in order to recognize the type disease from normal subjects or to estimate the stage of the disease. Classification of clinical data such as Alzheimer's disease has been always challenging and most problematic part has been always selecting the most discriminative features. Using Convolutional Neural Network (CNN) and the famous architecture LeNet-5, we successfully classified structural MRI data of Alzheimer's subjects from normal controls where the accuracy of test data on trained data reached 98.84%. This experiment suggests us the shift and scale invariant features extracted by CNN followed by deep learning classification is most powerful method to distinguish clinical data from healthy data in fMRI. This approach also enables us to expand our methodology to predict more complicated systems.

We propose an efficient method to estimate the accuracy of classifiers using only unlabeled data. We consider a setting with multiple classification problems where the target classes may be tied together through logical constraints. For example, a set of classes may be mutually exclusive, meaning that a data instance can belong to at most one of them. The proposed method is based on the intuition that: (i) when classifiers agree, they are more likely to be correct, and (ii) when the classifiers make a prediction that violates the constraints, at least one classifier must be making an error. Experiments on four real-world data sets produce accuracy estimates within a few percent of the true accuracy, using solely unlabeled data. Our models also outperform existing state-of-the-art solutions in both estimating accuracies, and combining multiple classifier outputs. The results emphasize the utility of logical constraints in estimating accuracy, thus validating our intuition.

Recently, (Blanchet, Kang, and Murhy 2016) showed that several machine learning algorithms, such as square-root Lasso, Support Vector Machines, and regularized logistic regression, among many others, can be represented exactly as distributionally robust optimization (DRO) problems. The distributional uncertainty is defined as a neighborhood centered at the empirical distribution. We propose a methodology which learns such neighborhood in a natural data-driven way. We show rigorously that our framework encompasses adaptive regularization as a particular case. Moreover, we demonstrate empirically that our proposed methodology is able to improve upon a wide range of popular machine learning estimators.

In this paper, we present a novel method for co-clustering, an unsupervised learning approach that aims at discovering homogeneous groups of data instances and features by grouping them simultaneously. The proposed method uses the entropy regularized optimal transport between empirical measures defined on data instances and features in order to obtain an estimated joint probability density function represented by the optimal coupling matrix. This matrix is further factorized to obtain the induced row and columns partitions using multiscale representations approach. To justify our method theoretically, we show how the solution of the regularized optimal transport can be seen from the variational inference perspective thus motivating its use for co-clustering. The algorithm derived for the proposed method and its kernelized version based on the notion of Gromov-Wasserstein distance are fast, accurate and can determine automatically the number of both row and column clusters. These features are vividly demonstrated through extensive experimental evaluations.

Data-driven Distributionally Robust Optimization (DD-DRO) via optimal transport has been shown to encompass a wide range of popular machine learning algorithms. The distributional uncertainty size is often shown to correspond to the regularization parameter. The type of regularization (e.g. the norm used to regularize) corresponds to the shape of the distributional uncertainty. We propose a data-driven robust optimization methodology to inform the transportation cost underlying the definition of the distributional uncertainty. We show empirically that this additional layer of robustification, which produces a method we called doubly robust data-driven distributionally robust optimization (DD-R-DRO), allows to enhance the generalization properties of regularized estimators while reducing testing error relative to state-of-the-art classifiers in a wide range of data sets.

We study the problem of interactively learning a binary classifier using noisy labeling and pairwise comparison oracles, where the comparison oracle answers which one in the given two instances is more likely to be positive. Learning from such oracles has multiple applications where obtaining direct labels is harder but pairwise comparisons are easier, and the algorithm can leverage both types of oracles. In this paper, we attempt to characterize how the access to an easier comparison oracle helps in improving the label and total query complexity. We show that the comparison oracle reduces the learning problem to that of learning a threshold function. We then present an algorithm that interactively queries the label and comparison oracles and we characterize its query complexity under Tsybakov and adversarial noise conditions for the comparison and labeling oracles. Our lower bounds show that our label and total query complexity is almost optimal.

In the Best-$K$ identification problem (Best-$K$-Arm), we are given $N$ stochastic bandit arms with unknown reward distributions. Our goal is to identify the $K$ arms with the largest means with high confidence, by drawing samples from the arms adaptively. This problem is motivated by various practical applications and has attracted considerable attention in the past decade. In this paper, we propose new practical algorithms for the Best-$K$-Arm problem, which have nearly optimal sample complexity bounds (matching the lower bound up to logarithmic factors) and outperform the state-of-the-art algorithms for the Best-$K$-Arm problem (even for $K=1$) in practice.

Forward regression is a statistical model selection and estimation procedure which inductively selects covariates that add predictive power into a working statistical regression model. Once a model is selected, unknown regression parameters are estimated by least squares. This paper analyzes forward regression in high-dimensional sparse linear models. Probabilistic bounds for prediction error norm and number of selected covariates are proved. The analysis in this paper gives sharp rates and does not require beta-min or irrepresentability conditions.

We develop a variant of multiclass logistic regression that achieves three properties: i) We minimize a non-convex surrogate loss which makes the method robust to outliers, ii) our method allows transitioning between non-convex and convex losses by the choice of the parameters, iii) the surrogate loss is Bayes consistent, even in the non-convex case. The algorithm has one weight vector per class and the surrogate loss is a function of the linear activations (one per class). The surrogate loss of an example with linear activation vector $\mathbf{a}$ and class $c$ has the form $-\log_{t_1} \exp_{t_2} (a_c - G_{t_2}(\mathbf{a}))$ where the two temperatures $t_1$ and $t_2$ "temper" the $\log$ and $\exp$, respectively, and $G_{t_2}$ is a generalization of the log-partition function. We motivate this loss using the Tsallis divergence. As the temperature of the logarithm becomes smaller than the temperature of the exponential, the surrogate loss becomes "more quasi-convex". Various tunings of the temperatures recover previous methods and tuning the degree of non-convexity is crucial in the experiments. The choice $t_1<1$ and $t_2>1$ performs best experimentally. We explain this by showing that $t_1 < 1$ caps the surrogate loss and $t_2 >1$ makes the predictive distribution have a heavy tail.

Automatic music transcription (AMT) aims to infer a latent symbolic representation of a piece of music (piano-roll), given a corresponding observed audio recording. Transcribing polyphonic music (when multiple notes are played simultaneously) is a challenging problem, due to highly structured overlapping between harmonics. We study whether the introduction of physically inspired Gaussian process (GP) priors into audio content analysis models improves the extraction of patterns required for AMT. Audio signals are described as a linear combination of sources. Each source is decomposed into the product of an amplitude-envelope, and a quasi-periodic component process. We introduce the Mat\'ern spectral mixture (MSM) kernel for describing frequency content of singles notes. We consider two different regression approaches. In the sigmoid model every pitch-activation is independently non-linear transformed. In the softmax model several activation GPs are jointly non-linearly transformed. This introduce cross-correlation between activations. We use variational Bayes for approximate inference. We empirically evaluate how these models work in practice transcribing polyphonic music. We demonstrate that rather than encourage dependency between activations, what is relevant for improving pitch detection is to learnt priors that fit the frequency content of the sound events to detect.