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Multi-Peptide: Multimodality Leveraged Language-Graph Learning of Peptide Properties

arXiv.org Artificial Intelligence

Peptides are essential in biological processes and therapeutics. In this study, we introduce Multi-Peptide, an innovative approach that combines transformer-based language models with Graph Neural Networks (GNNs) to predict peptide properties. We combine PeptideBERT, a transformer model tailored for peptide property prediction, with a GNN encoder to capture both sequence-based and structural features. By employing Contrastive Language-Image Pre-training (CLIP), Multi-Peptide aligns embeddings from both modalities into a shared latent space, thereby enhancing the model's predictive accuracy. Evaluations on hemolysis and nonfouling datasets demonstrate Multi-Peptide's robustness, achieving state-of-the-art 86.185% accuracy in hemolysis prediction. This study highlights the potential of multimodal learning in bioinformatics, paving the way for accurate and reliable predictions in peptide-based research and applications.


Categorized Grid and Unknown Space Causes for LiDAR-based Dynamic Occupancy Grids

arXiv.org Artificial Intelligence

Occupancy Grids have been widely used for perception of the environment as they allow to model the obstacles in the scene, as well as free and unknown space. Recently, there has been a growing interest in the unknown space due to the necessity of better understanding the situation. Although Occupancy Grids have received numerous extensions over the years to address emerging needs, currently, few works go beyond the delimitation of the unknown space area and seek to incorporate additional information. This work builds upon the already well-established LiDAR-based Dynamic Occupancy Grid to introduce a complementary Categorized Grid that conveys its estimation using semantic labels while adding new insights into the possible causes of unknown space. The proposed categorization first divides the space by occupancy and then further categorizes the occupied and unknown space. Occupied space is labeled based on its dynamic state and reliability, while the unknown space is labeled according to its possible causes, whether they stem from the perception system's inherent constraints, limitations induced by the environment, or other causes. The proposed Categorized Grid is showcased in real-world scenarios demonstrating its usefulness for better situation understanding.


Generative Large Language Models in Automated Fact-Checking: A Survey

arXiv.org Artificial Intelligence

The dissemination of false information across online platforms poses a serious societal challenge, necessitating robust measures for information verification. While manual fact-checking efforts are still instrumental, the growing volume of false information requires automated methods. Large language models (LLMs) offer promising opportunities to assist fact-checkers, leveraging LLM's extensive knowledge and robust reasoning capabilities. In this survey paper, we investigate the utilization of generative LLMs in the realm of fact-checking, illustrating various approaches that have been employed and techniques for prompting or fine-tuning LLMs. By providing an overview of existing approaches, this survey aims to improve the understanding of utilizing LLMs in fact-checking and to facilitate further progress in LLMs' involvement in this process.


Revisi\'on de M\'etodos de Planificaci\'on de Camino de Cobertura para Entornos Agr\'icolas

arXiv.org Artificial Intelligence

The use of an efficient coverage planning method is key for autonomous navigation in agricultural environments, where a robot must cover large areas of crops. This paper generally reviews the current state of the art of coverage path planning methods. Two widely used techniques applicable to agricultural environments are described in detail. The first consists of breaking down a complex field with obstacles into simpler subregions known as cells, to subsequently generate a coverage pattern in each of them. The second analyzes spaces composed of parallel strips through which the robot must circulate, in order to find the optimal order of visiting strips that minimizes the total distance traveled. Additionally, the combination of both techniques is discussed in order to obtain a more efficient global coverage plan. This analysis was conceived to be implemented with the soybean crop weeding robot developed at CIFASIS (CONICET-UNR).


DyGPrompt: Learning Feature and Time Prompts on Dynamic Graphs

arXiv.org Artificial Intelligence

Dynamic graphs are pervasive in the real world, modeling dynamic relations between objects across various fields. For dynamic graph modeling, dynamic graph neural networks (DGNNs) have emerged as a mainstream technique, which are generally pre-trained on the link prediction task, leaving a significant gap from the objectives of downstream tasks such as node classification. To bridge the gap, prompt-based learning has gained traction on graphs. However, existing efforts focus on static graphs, neglecting the evolution of dynamic graphs. In this paper, we propose DyGPrompt, a novel pre-training and prompting framework for dynamic graph modeling. First, we design dual prompts to address the gap in both task objectives and dynamic variations across pre-training and downstream tasks. Second, we recognize that node and time features mutually characterize each other, and propose dual condition-nets to model the evolving node-time patterns in downstream tasks. Finally, we thoroughly evaluate and analyze DyGPrompt through extensive experiments on three public datasets.


A Practical Review of Mechanistic Interpretability for Transformer-Based Language Models

arXiv.org Artificial Intelligence

Mechanistic interpretability (MI) is an emerging sub-field of interpretability that seeks to understand a neural network model by reverse-engineering its internal computations. Recently, MI has garnered significant attention for interpreting transformer-based language models (LMs), resulting in many novel insights yet introducing new challenges. However, there has not been work that comprehensively reviews these insights and challenges, particularly as a guide for newcomers to this field. To fill this gap, we present a comprehensive survey outlining fundamental objects of study in MI, techniques that have been used for its investigation, approaches for evaluating MI results, and significant findings and applications stemming from the use of MI to understand LMs. In particular, we present a roadmap for beginners to navigate the field and leverage MI for their benefit. Finally, we also identify current gaps in the field and discuss potential future directions.


A Survey on Integration of Large Language Models with Intelligent Robots

arXiv.org Artificial Intelligence

In recent years, the integration of large language models (LLMs) has revolutionized the field of robotics, enabling robots to communicate, understand, and reason with human-like proficiency. This paper explores the multifaceted impact of LLMs on robotics, addressing key challenges and opportunities for leveraging these models across various domains. By categorizing and analyzing LLM applications within core robotics elements -- communication, perception, planning, and control -- we aim to provide actionable insights for researchers seeking to integrate LLMs into their robotic systems. Our investigation focuses on LLMs developed post-GPT-3.5, primarily in text-based modalities while also considering multimodal approaches for perception and control. We offer comprehensive guidelines and examples for prompt engineering, facilitating beginners' access to LLM-based robotics solutions. Through tutorial-level examples and structured prompt construction, we illustrate how LLM-guided enhancements can be seamlessly integrated into robotics applications. This survey serves as a roadmap for researchers navigating the evolving landscape of LLM-driven robotics, offering a comprehensive overview and practical guidance for harnessing the power of language models in robotics development.


Pushing the Boundary: Specialising Deep Configuration Performance Learning

arXiv.org Artificial Intelligence

Software systems often have numerous configuration options that can be adjusted to meet different performance requirements. However, understanding the combined impact of these options on performance is often challenging, especially with limited real-world data. To tackle this issue, deep learning techniques have gained popularity due to their ability to capture complex relationships even with limited samples. This thesis begins with a systematic literature review of deep learning techniques in configuration performance modeling, analyzing 85 primary papers out of 948 searched papers. It identifies knowledge gaps and sets three objectives for the thesis. The first knowledge gap is the lack of understanding about which encoding scheme is better and in what circumstances. To address this, the thesis conducts an empirical study comparing three popular encoding schemes. Actionable suggestions are provided to support more reliable decisions. Another knowledge gap is the sparsity inherited from the configuration landscape. To handle this, the thesis proposes a model-agnostic and sparsity-robust framework called DaL, which uses a "divide-and-learn" approach. DaL outperforms state-of-the-art approaches in accuracy improvement across various real-world systems. The thesis also addresses the limitation of predicting under static environments by proposing a sequential meta-learning framework called SeMPL. Unlike traditional meta-learning frameworks, SeMPL trains meta-environments in a specialized order, resulting in significantly improved prediction accuracy in multi-environment scenarios. Overall, the thesis identifies and addresses critical knowledge gaps in deep performance learning, significantly advancing the accuracy of performance prediction.


Distributed Instruments for Planetary Surface Science: Scientific Opportunities and Technology Feasibility

arXiv.org Artificial Intelligence

In this paper, we assess the scientific promise and technology feasibility of distributed instruments for planetary science. A distributed instrument is an instrument designed to collect spatially and temporally correlated data from multiple networked, geographically distributed point sensors. Distributed instruments are ubiquitous in Earth science, where they are routinely employed for weather and climate science, seismic studies and resource prospecting, and detection of industrial emissions. However, to date, their adoption in planetary surface science has been minimal. It is natural to ask whether this lack of adoption is driven by low potential to address high-priority questions in planetary science; immature technology; or both. To address this question, we survey high-priority planetary science questions that are uniquely well-suited to distributed instruments. We identify four areas of research where distributed instruments hold promise to unlock answers that are largely inaccessible to monolithic sensors, namely, weather and climate studies of Mars; localization of seismic events on rocky and icy bodies; localization of trace gas emissions, primarily on Mars; and magnetometry studies of internal composition. Next, we survey enabling technologies for distributed sensors and assess their maturity. We identify sensor placement (including descent and landing on planetary surfaces), power, and instrument autonomy as three key areas requiring further investment to enable future distributed instruments. Overall, this work shows that distributed instruments hold great promise for planetary science, and paves the way for follow-on studies of future distributed instruments for Solar System in-situ science.


An Outline of Prognostics and Health Management Large Model: Concepts, Paradigms, and Challenges

arXiv.org Artificial Intelligence

Prognosis and Health Management (PHM), critical for ensuring task completion by complex systems and preventing unexpected failures, is widely adopted in aerospace, manufacturing, maritime, rail, energy, etc. However, PHM's development is constrained by bottlenecks like generalization, interpretation and verification abilities. Presently, generative artificial intelligence (AI), represented by Large Model, heralds a technological revolution with the potential to fundamentally reshape traditional technological fields and human production methods. Its capabilities, including strong generalization, reasoning, and generative attributes, present opportunities to address PHM's bottlenecks. To this end, based on a systematic analysis of the current challenges and bottlenecks in PHM, as well as the research status and advantages of Large Model, we propose a novel concept and three progressive paradigms of Prognosis and Health Management Large Model (PHM-LM) through the integration of the Large Model with PHM. Subsequently, we provide feasible technical approaches for PHM-LM to bolster PHM's core capabilities within the framework of the three paradigms. Moreover, to address core issues confronting PHM, we discuss a series of technical challenges of PHM-LM throughout the entire process of construction and application. This comprehensive effort offers a holistic PHM-LM technical framework, and provides avenues for new PHM technologies, methodologies, tools, platforms and applications, which also potentially innovates design, research & development, verification and application mode of PHM. And furthermore, a new generation of PHM with AI will also capably be realized, i.e., from custom to generalized, from discriminative to generative, and from theoretical conditions to practical applications.