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Deep Learning for Retrospective Motion Correction in MRI: A Comprehensive Review

arXiv.org Artificial Intelligence

Motion represents one of the major challenges in magnetic resonance imaging (MRI). Since the MR signal is acquired in frequency space, any motion of the imaged object leads to complex artefacts in the reconstructed image in addition to other MR imaging artefacts. Deep learning has been frequently proposed for motion correction at several stages of the reconstruction process. The wide range of MR acquisition sequences, anatomies and pathologies of interest, and motion patterns (rigid vs. deformable and random vs. regular) makes a comprehensive solution unlikely. To facilitate the transfer of ideas between different applications, this review provides a detailed overview of proposed methods for learning-based motion correction in MRI together with their common challenges and potentials. This review identifies differences and synergies in underlying data usage, architectures, training and evaluation strategies. We critically discuss general trends and outline future directions, with the aim to enhance interaction between different application areas and research fields.


Enhancing Healthcare with EOG: A Novel Approach to Sleep Stage Classification

arXiv.org Artificial Intelligence

We introduce an innovative approach to automated sleep stage classification using EOG signals, addressing the discomfort and impracticality associated with EEG data acquisition. In addition, it is important to note that this approach is untapped in the field, highlighting its potential for novel insights and contributions. Our proposed SE-Resnet-Transformer model provides an accurate classification of five distinct sleep stages from raw EOG signal. Extensive validation on publically available databases (SleepEDF-20, SleepEDF-78, and SHHS) reveals noteworthy performance, with macro-F1 scores of 74.72, 70.63, and 69.26, respectively. Our model excels in identifying REM sleep, a crucial aspect of sleep disorder investigations. We also provide insight into the internal mechanisms of our model using techniques such as 1D-GradCAM and t-SNE plots. Our method improves the accessibility of sleep stage classification while decreasing the need for EEG modalities. This development will have promising implications for healthcare and the incorporation of wearable technology into sleep studies, thereby advancing the field's potential for enhanced diagnostics and patient comfort.


Joint Communication and Computation Framework for Goal-Oriented Semantic Communication with Distortion Rate Resilience

arXiv.org Artificial Intelligence

Recent research efforts on semantic communication have mostly considered accuracy as a main problem for optimizing goal-oriented communication systems. However, these approaches introduce a paradox: the accuracy of artificial intelligence (AI) tasks should naturally emerge through training rather than being dictated by network constraints. Acknowledging this dilemma, this work introduces an innovative approach that leverages the rate-distortion theory to analyze distortions induced by communication and semantic compression, thereby analyzing the learning process. Specifically, we examine the distribution shift between the original data and the distorted data, thus assessing its impact on the AI model's performance. Founding upon this analysis, we can preemptively estimate the empirical accuracy of AI tasks, making the goal-oriented semantic communication problem feasible. To achieve this objective, we present the theoretical foundation of our approach, accompanied by simulations and experiments that demonstrate its effectiveness. The experimental results indicate that our proposed method enables accurate AI task performance while adhering to network constraints, establishing it as a valuable contribution to the field of signal processing. Furthermore, this work advances research in goal-oriented semantic communication and highlights the significance of data-driven approaches in optimizing the performance of intelligent systems.


When Automated Assessment Meets Automated Content Generation: Examining Text Quality in the Era of GPTs

arXiv.org Artificial Intelligence

The use of machine learning (ML) models to assess and score textual data has become increasingly pervasive in an array of contexts including natural language processing, information retrieval, search and recommendation, and credibility assessment of online content. A significant disruption at the intersection of ML and text are text-generating large-language models such as generative pre-trained transformers (GPTs). We empirically assess the differences in how ML-based scoring models trained on human content assess the quality of content generated by humans versus GPTs. To do so, we propose an analysis framework that encompasses essay scoring ML-models, human and ML-generated essays, and a statistical model that parsimoniously considers the impact of type of respondent, prompt genre, and the ML model used for assessment model. A rich testbed is utilized that encompasses 18,460 human-generated and GPT-based essays. Results of our benchmark analysis reveal that transformer pretrained language models (PLMs) more accurately score human essay quality as compared to CNN/RNN and feature-based ML methods. Interestingly, we find that the transformer PLMs tend to score GPT-generated text 10-15\% higher on average, relative to human-authored documents. Conversely, traditional deep learning and feature-based ML models score human text considerably higher. Further analysis reveals that although the transformer PLMs are exclusively fine-tuned on human text, they more prominently attend to certain tokens appearing only in GPT-generated text, possibly due to familiarity/overlap in pre-training. Our framework and results have implications for text classification settings where automated scoring of text is likely to be disrupted by generative AI.


pLMFPPred: a novel approach for accurate prediction of functional peptides integrating embedding from pre-trained protein language model and imbalanced learning

arXiv.org Artificial Intelligence

Functional peptides have the potential to treat a variety of diseases. Their good therapeutic efficacy and low toxicity make them ideal therapeutic agents. Artificial intelligence-based computational strategies can help quickly identify new functional peptides from collections of protein sequences and discover their different functions.Using protein language model-based embeddings (ESM-2), we developed a tool called pLMFPPred (Protein Language Model-based Functional Peptide Predictor) for predicting functional peptides and identifying toxic peptides. We also introduced SMOTE-TOMEK data synthesis sampling and Shapley value-based feature selection techniques to relieve data imbalance issues and reduce computational costs. On a validated independent test set, pLMFPPred achieved accuracy, Area under the curve - Receiver Operating Characteristics, and F1-Score values of 0.974, 0.99, and 0.974, respectively. Comparative experiments show that pLMFPPred outperforms current methods for predicting functional peptides.The experimental results suggest that the proposed method (pLMFPPred) can provide better performance in terms of Accuracy, Area under the curve - Receiver Operating Characteristics, and F1-Score than existing methods. pLMFPPred has achieved good performance in predicting functional peptides and represents a new computational method for predicting functional peptides.


Overview of Class Activation Maps for Visualization Explainability

arXiv.org Artificial Intelligence

Recent research in deep learning methodology has led to a variety of complex modelling techniques in computer vision (CV) that reach or even outperform human performance. Although these black-box deep learning models have obtained astounding results, they are limited in their interpretability and transparency which are critical to take learning machines to the next step to include them in sensitive decision-support systems involving human supervision. Hence, the development of explainable techniques for computer vision (XCV) has recently attracted increasing attention. In the realm of XCV, Class Activation Maps (CAMs) have become widely recognized and utilized for enhancing interpretability and insights into the decision-making process of deep learning models. This work presents a comprehensive overview of the evolution of Class Activation Map methods over time. It also explores the metrics used for evaluating CAMs and introduces auxiliary techniques to improve the saliency of these methods. The overview concludes by proposing potential avenues for future research in this evolving field.


Autonomous Vehicles an overview on system, cyber security, risks, issues, and a way forward

arXiv.org Artificial Intelligence

This chapter explores the complex realm of autonomous cars, analyzing their fundamental components and operational characteristics. The initial phase of the discussion is elucidating the internal mechanics of these automobiles, encompassing the crucial involvement of sensors, artificial intelligence (AI) identification systems, control mechanisms, and their integration with cloud-based servers within the framework of the Internet of Things (IoT). It delves into practical implementations of autonomous cars, emphasizing their utilization in forecasting traffic patterns and transforming the dynamics of transportation. The text also explores the topic of Robotic Process Automation (RPA), illustrating the impact of autonomous cars on different businesses through the automation of tasks. The primary focus of this investigation lies in the realm of cybersecurity, specifically in the context of autonomous vehicles. A comprehensive analysis will be conducted to explore various risk management solutions aimed at protecting these vehicles from potential threats including ethical, environmental, legal, professional, and social dimensions, offering a comprehensive perspective on their societal implications. A strategic plan for addressing the challenges and proposing strategies for effectively traversing the complex terrain of autonomous car systems, cybersecurity, hazards, and other concerns are some resources for acquiring an understanding of the intricate realm of autonomous cars and their ramifications in contemporary society, supported by a comprehensive compilation of resources for additional investigation. Keywords: RPA, Cyber Security, AV, Risk, Smart Cars


Affective Game Computing: A Survey

arXiv.org Artificial Intelligence

This paper surveys the current state of the art in affective computing principles, methods and tools as applied to games. We review this emerging field, namely affective game computing, through the lens of the four core phases of the affective loop: game affect elicitation, game affect sensing, game affect detection and game affect adaptation. In addition, we provide a taxonomy of terms, methods and approaches used across the four phases of the affective game loop and situate the field within this taxonomy. We continue with a comprehensive review of available affect data collection methods with regards to gaming interfaces, sensors, annotation protocols, and available corpora. The paper concludes with a discussion on the current limitations of affective game computing and our vision for the most promising future research directions in the field.


Comprehensive Overview of Named Entity Recognition: Models, Domain-Specific Applications and Challenges

arXiv.org Artificial Intelligence

In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the evolving landscape of NER methodologies, blending foundational principles with contemporary AI advancements. Beginning with the rudimentary concepts of NER, the study spans a spectrum of techniques from traditional rule-based strategies to the contemporary marvels of transformer architectures, particularly highlighting integrations such as BERT with LSTM and CNN. The narrative accentuates domain-specific NER models, tailored for intricate areas like finance, legal, and healthcare, emphasizing their specialized adaptability. Additionally, the research delves into cutting-edge paradigms including reinforcement learning, innovative constructs like E-NER, and the interplay of Optical Character Recognition (OCR) in augmenting NER capabilities. Grounding its insights in practical realms, the paper sheds light on the indispensable role of NER in sectors like finance and biomedicine, addressing the unique challenges they present. The conclusion outlines open challenges and avenues, marking this work as a comprehensive guide for those delving into NER research and applications.


How to estimate carbon footprint when training deep learning models? A guide and review

arXiv.org Artificial Intelligence

Machine learning and deep learning models have become essential in the recent fast development of artificial intelligence in many sectors of the society. It is now widely acknowledge that the development of these models has an environmental cost that has been analyzed in many studies. Several online and software tools have been developed to track energy consumption while training machine learning models. In this paper, we propose a comprehensive introduction and comparison of these tools for AI practitioners wishing to start estimating the environmental impact of their work. We review the specific vocabulary, the technical requirements for each tool. We compare the energy consumption estimated by each tool on two deep neural networks for image processing and on different types of servers. From these experiments, we provide some advice for better choosing the right tool and infrastructure.