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Multiple Instance Learning for Computer Aided Diagnosis
Dundar, Murat, Krishnapuram, Balaji, Rao, R. B., Fung, Glenn M.
Many computer aided diagnosis (CAD) problems can be best modelled as a multiple-instance learning (MIL) problem with unbalanced data: i.e., the training data typically consists of a few positive bags, and a very large number of negative instances.Existing MIL algorithms are much too computationally expensive for these datasets. We describe CH, a framework for learning a Convex Hull representation of multiple instances that is significantly faster than existing MIL algorithms. Our CH framework applies to any standard hyperplane-based learning algorithm, and for some algorithms, is guaranteed to find the global optimal solution. Experimentalstudies on two different CAD applications further demonstrate that the proposed algorithm significantly improves diagnostic accuracy when compared toboth MIL and traditional classifiers. Although not designed for standard MIL problems (which have both positive and negative bags and relatively balanced datasets),comparisons against other MIL methods on benchmark problems also indicate that the proposed method is competitive with the state-of-the-art.
Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype
Sing, Tobias, Beerenwinkel, Niko
Starting with the work of Jaakkola and Haussler, a variety of approaches have been proposed for coupling domain-specific generative models with statistical learning methods. The link is established by a kernel function which provides a similarity measure based inherently on the underlying model. In computational biology, the full promise of this framework has rarely ever been exploited, as most kernels are derived from very generic models, such as sequence profiles or hidden Markov models. Here, we introduce the MTreeMix kernel, which is based on a generative model tailored to the underlying biological mechanism.
Unsupervised Learning of a Probabilistic Grammar for Object Detection and Parsing
Chen, Yuanhao, Zhu, Long, Yuille, Alan L.
We describe an unsupervised method for learning a probabilistic grammar of an object from a set of training examples. Our approach is invariant to the scale and rotation of the objects. We illustrate our approach using thirteen objects from the Caltech 101 database. In addition, we learn the model of a hybrid object class where we do not know the specific object or its position, scale or pose. This is illustrated bylearning a hybrid class consisting of faces, motorbikes, and airplanes. The individual objects can be recovered as different aspects of the grammar for the object class.
Context dependent amplification of both rate and event-correlation in a VLSI network of spiking neurons
Chicca, Elisabetta, Indiveri, Giacomo, Douglas, Rodney J.
Cooperative competitive networks are believed to play a central role in cortical processing and have been shown to exhibit a wide set of useful computational properties. We propose a VLSI implementation of a spiking cooperative competitive networkand show how it can perform context dependent computation both in the mean firing rate domain and in spike timing correlation space. In the mean rate case the network amplifies the activity of neurons belonging to the selected stimulus and suppresses the activity of neurons receiving weaker stimuli. In the event correlation case, the recurrent network amplifies with a higher gain the correlation betweenneurons which receive highly correlated inputs while leaving the mean firing rate unaltered. We describe the network architecture and present experimental datademonstrating its context dependent computation capabilities.
Learning Motion Style Synthesis from Perceptual Observations
Torresani, Lorenzo, Hackney, Peggy, Bregler, Christoph
This paper presents an algorithm for synthesis of human motion in specified styles. We use a theory of movement observation (Laban Movement Analysis) to describe movement styles as points in a multidimensional perceptual space. We cast the task of learning to synthesize desired movement styles as a regression problem: sequences generated via space-time interpolation of motion capture data are used to learn a nonlinear mapping between animation parameters and movement styles in perceptual space. We demonstrate that the learned model can apply a variety of motion styles to prerecorded motion sequences and it can extrapolate styles not originally included in the training data.
The Robustness-Performance Tradeoff in Markov Decision Processes
Computation of a satisfactory control policy for a Markov decision process when the parameters of the model are not exactly known is a problem encountered in many practical applications. The traditional robust approach is based on a worstcase analysisand may lead to an overly conservative policy. In this paper we consider thetradeoff between nominal performance and the worst case performance over all possible models. Based on parametric linear programming, we propose a method that computes the whole set of Pareto efficient policies in the performancerobustness planewhen only the reward parameters are subject to uncertainty. In the more general case when the transition probabilities are also subject to error, we show that the strategy with the "optimal" tradeoff might be non-Markovian and hence is in general not tractable.