Given a directed acyclic graph $G,$ and a set of values $y$ on the vertices, the Isotonic Regression of $y$ is a vector $x$ that respects the partial order described by $G,$ and minimizes $\|x-y\|,$ for a specified norm. This paper gives improved algorithms for computing the Isotonic Regression for all weighted $\ell_{p}$-norms with rigorous performance guarantees. Our algorithms are quite practical, and their variants can be implemented to run fast in practice.

Spectral inference provides fast algorithms and provable optimality for latent topic analysis. But for real data these algorithms require additional ad-hoc heuristics, and even then often produce unusable results. We explain this poor performance by casting the problem of topic inference in the framework of Joint Stochastic Matrix Factorization (JSMF) and showing that previous methods violate the theoretical conditions necessary for a good solution to exist. We then propose a novel rectification method that learns high quality topics and their interactions even on small, noisy data. This method achieves results comparable to probabilistic techniques in several domains while maintaining scalability and provable optimality.

An associative memory is a structure learned from a dataset $\mathcal{M}$ of vectors (signals) in a way such that, given a noisy version of one of the vectors as input, the nearest valid vector from $\mathcal{M}$ (nearest neighbor) is provided as output, preferably via a fast iterative algorithm. Traditionally, binary (or $q$-ary) Hopfield neural networks are used to model the above structure. In this paper, for the first time, we propose a model of associative memory based on sparse recovery of signals. Our basic premise is simple. For a dataset, we learn a set of linear constraints that every vector in the dataset must satisfy. Provided these linear constraints possess some special properties, it is possible to cast the task of finding nearest neighbor as a sparse recovery problem. Assuming generic random models for the dataset, we show that it is possible to store super-polynomial or exponential number of $n$-length vectors in a neural network of size $O(n)$. Furthermore, given a noisy version of one of the stored vectors corrupted in near-linear number of coordinates, the vector can be correctly recalled using a neurally feasible algorithm.

In recent years, approaches based on machine learning have achieved state-of-the-art performance on image restoration problems. Successful approaches include both generative models of natural images as well as discriminative training of deep neural networks. Discriminative training of feed forward architectures allows explicit control over the computational cost of performing restoration and therefore often leads to better performance at the same cost at run time. In contrast, generative models have the advantage that they can be trained once and then adapted to any image restoration task by a simple use of Bayes' rule. In this paper we show how to combine the strengths of both approaches by training a discriminative, feed-forward architecture to predict the state of latent variables in a generative model of natural images. We apply this idea to the very successful Gaussian Mixture Model (GMM) of natural images. We show that it is possible to achieve comparable performance as the original GMM but with two orders of magnitude improvement in run time while maintaining the advantage of generative models.

Stochastic gradient descent (SGD) is a ubiquitous algorithm for a variety of machine learning problems. Researchers and industry have developed several techniques to optimize SGD's runtime performance, including asynchronous execution and reduced precision. Our main result is a martingale-based analysis that enables us to capture the rich noise models that may arise from such techniques. Specifically, we useour new analysis in three ways: (1) we derive convergence rates for the convex case (Hogwild) with relaxed assumptions on the sparsity of the problem; (2) we analyze asynchronous SGD algorithms for non-convex matrix problems including matrix completion; and (3) we design and analyze an asynchronous SGD algorithm, called Buckwild, that uses lower-precision arithmetic. We show experimentally that our algorithms run efficiently for a variety of problems on modern hardware.

Active learning methods automatically adapt data collection by selecting the most informative samples in order to accelerate machine learning. Because of this, real-world testing and comparing active learning algorithms requires collecting new datasets (adaptively), rather than simply applying algorithms to benchmark datasets, as is the norm in (passive) machine learning research. To facilitate the development, testing and deployment of active learning for real applications, we have built an open-source software system for large-scale active learning research and experimentation. The system, called NEXT, provides a unique platform for real-world, reproducible active learning research. This paper details the challenges of building the system and demonstrates its capabilities with several experiments. The results show how experimentation can help expose strengths and weaknesses of active learning algorithms, in sometimes unexpected and enlightening ways.

We study optimization algorithms based on variance reduction for stochastic gradientdescent (SGD). Remarkable recent progress has been made in this directionthrough development of algorithms like SAG, SVRG, SAGA. These algorithmshave been shown to outperform SGD, both theoretically and empirically. However,asynchronous versions of these algorithms—a crucial requirement for modernlarge-scale applications—have not been studied. We bridge this gap by presentinga unifying framework that captures many variance reduction techniques.Subsequently, we propose an asynchronous algorithm grounded in our framework,with fast convergence rates. An important consequence of our general approachis that it yields asynchronous versions of variance reduction algorithms such asSVRG, SAGA as a byproduct. Our method achieves near linear speedup in sparsesettings common to machine learning. We demonstrate the empirical performanceof our method through a concrete realization of asynchronous SVRG.

Sequential Monte Carlo (SMC), or particle filtering, is a popular class of methods for sampling from an intractable target distribution using a sequence of simpler intermediate distributions. Like other importance sampling-based methods, performance is critically dependent on the proposal distribution: a bad proposal can lead to arbitrarily inaccurate estimates of the target distribution. This paper presents a new method for automatically adapting the proposal using an approximation of the Kullback-Leibler divergence between the true posterior and the proposal distribution. The method is very flexible, applicable to any parameterized proposal distribution and it supports online and batch variants. We use the new framework to adapt powerful proposal distributions with rich parameterizations based upon neural networks leading to Neural Adaptive Sequential Monte Carlo (NASMC). Experiments indicate that NASMC significantly improves inference in a non-linear state space model outperforming adaptive proposal methods including the Extended Kalman and Unscented Particle Filters. Experiments also indicate that improved inference translates into improved parameter learning when NASMC is used as a subroutine of Particle Marginal Metropolis Hastings. Finally we show that NASMC is able to train a latent variable recurrent neural network (LV-RNN) achieving results that compete with the state-of-the-art for polymorphic music modelling. NASMC can be seen as bridging the gap between adaptive SMC methods and the recent work in scalable, black-box variational inference.

The Jaccard index is a standard statistics for comparing the pairwise similarity between data samples. This paper investigates the problem of estimating a Jaccard index matrix when there are missing observations in data samples. Starting from a Jaccard index matrix approximated from the incomplete data, our method calibrates the matrix to meet the requirement of positive semi-definiteness and other constraints, through a simple alternating projection algorithm. Compared with conventional approaches that estimate the similarity matrix based on the imputed data, our method has a strong advantage in that the calibrated matrix is guaranteed to be closer to the unknown ground truth in the Frobenius norm than the un-calibrated matrix (except in special cases they are identical). We carried out a series of empirical experiments and the results confirmed our theoretical justification. The evaluation also reported significantly improved results in real learning tasks on benchmarked datasets.

We consider the problem of testing whether two unequal-sized samples were drawn from identical distributions, versus distributions that differ significantly. Specifically, given a target error parameter $\eps > 0$, $m_1$ independent draws from an unknown distribution $p$ with discrete support, and $m_2$ draws from an unknown distribution $q$ of discrete support, we describe a test for distinguishing the case that $p=q$ from the case that $||p-q||_1 \geq \eps$. If $p$ and $q$ are supported on at most $n$ elements, then our test is successful with high probability provided $m_1\geq n^{2/3}/\varepsilon^{4/3}$ and $m_2 = \Omega\left(\max\{\frac{n}{\sqrt m_1\varepsilon^2}, \frac{\sqrt n}{\varepsilon^2}\}\right).$ We show that this tradeoff is information theoretically optimal throughout this range, in the dependencies on all parameters, $n,m_1,$ and $\eps$, to constant factors. As a consequence, we obtain an algorithm for estimating the mixing time of a Markov chain on $n$ states up to a $\log n$ factor that uses $\tilde{O}(n^{3/2} \tau_{mix})$ queries to a ``next node'' oracle. The core of our testing algorithm is a relatively simple statistic that seems to perform well in practice, both on synthetic data and on natural language data. We believe that this statistic might prove to be a useful primitive within larger machine learning and natural language processing systems.