The recent availability of complex and high-dimensional datasets has spurred the need for new data analysis methods. One prominent research direction in signal processing has been the focus on data supported over graphs [1]. Graph signals, i.e., signals taking values on the nodes of combinatorial graphs, represent a convenient solution to model data exhibiting complex and nonuniform properties, such as those found in social, biological, and transportation networks, among others. Arguably, the most fundamental tool in the analysis of graph signals is the graph Fourier transform (GFT) [1]-[3]. In an analogous manner to the discrete Fourier transform (DFT), using GFT one may examine graph signals in the graph frequency domain, and, for instance, remove noise by attenuating high graph-frequencies. GFT has also lead to significant new insights in problems such as smoothing and denoising [4]-[6], segmentation [7], sampling and approximation [8]-[10], and classification [11]-[13] of graph data.

Adaptive Filter for Automatic Identification of Multiple Faults in a Noisy OTDR Profile Jean Pierre von der Weid, Mario H. Souto, Joaquim D. Garcia, and Gustavo C. Amaral November 7, 2018 Abstract We present a novel methodology able to distinguish meaningful level shifts from typical signal fluctuations. A two-stage regularization filtering can accurately identify the location of the significant level-shifts with an efficient parameter-free algorithm. The developed methodology demands low computational effort and can easily be embedded in a dedicated processing unit. Our case studies compare the new methodology with current available ones and show that it is the most adequate technique for fast detection of multiple unknown level-shifts in a noisy OTDR profile. 1 Introduction The central problem in fiber monitoring is the detection of small faults or losses most commonly performed by inspecting the trace of an Optical Time Domain Reflectometer (OTDR) [1]. These faults appear as small level shifts in a slowly varying backscattered optical power, eventually masked by the detector noise. Averaging over many OTDR shots is usually required to get access to the information needed. However, measurement time is of paramount importance in network monitoring, so that signal processing and filtering is a fundamental tool to improve time and sensitivity of the overall process. Moreover, in the case of wavelength multiplexed optical networks (WDM-PON) the problem is still worse because coherent backscattered power fluctuations (CRN) cannot be averaged out by summing up many OTDR shots [2].

Early detection and precise characterization of emerging topics in text streams can be highly useful in applications such as timely and targeted public health interventions and discovering evolving regional business trends. Many methods have been proposed for detecting emerging events in text streams using topic modeling. However, these methods have numerous shortcomings that make them unsuitable for rapid detection of locally emerging events on massive text streams. In this paper, we describe Semantic Scan (SS) that has been developed specifically to overcome these shortcomings in detecting new spatially compact events in text streams. Semantic Scan integrates novel contrastive topic modeling with online document assignment and principled likelihood ratio-based spatial scanning to identify emerging events with unexpected patterns of keywords hidden in text streams. This enables more timely and accurate detection and characterization of anomalous, spatially localized emerging events. Semantic Scan does not require manual intervention or labeled training data, and is robust to noise in real-world text data since it identifies anomalous text patterns that occur in a cluster of new documents rather than an anomaly in a single new document. We compare Semantic Scan to alternative state-of-the-art methods such as Topics over Time, Online LDA, and Labeled LDA on two real-world tasks: (i) a disease surveillance task monitoring free-text Emergency Department chief complaints in Allegheny County, and (ii) an emerging business trend detection task based on Yelp reviews. On both tasks, we find that Semantic Scan provides significantly better event detection and characterization accuracy than competing approaches, while providing up to an order of magnitude speedup.

In this paper we construct a learning architecture for high dimensional time series sampled by sensor arrangements. Using a redundant wavelet decomposition on a graph constructed over the sensor locations, our algorithm is able to construct discriminative features that exploit the mutual information between the sensors. The algorithm then applies scattering networks to the time series graphs to create the feature space. We demonstrate our method on a machine olfaction problem, where one needs to classify the gas type and the location where it originates from data sampled by an array of sensors. Our experimental results clearly demonstrate that our method outperforms classical machine learning techniques used in previous studies.

Multi-objective optimization (MOO) is a well-studied problem for several important recommendation problems. While multiple approaches have been proposed, in this work, we focus on using constrained optimization formulations (e.g., quadratic and linear programs) to formulate and solve MOO problems. This approach can be used to pick desired operating points on the trade-off curve between multiple objectives. It also works well for internet applications which serve large volumes of online traffic, by working with Lagrangian duality formulation to connect dual solutions (computed offline) with the primal solutions (computed online). We identify some key limitations of this approach -- namely the inability to handle user and item level constraints, scalability considerations and variance of dual estimates introduced by sampling processes. We propose solutions for each of the problems and demonstrate how through these solutions we significantly advance the state-of-the-art in this realm. Our proposed methods can exactly handle user and item (and other such local) constraints, achieve a $100\times$ scalability boost over existing packages in R and reduce variance of dual estimates by two orders of magnitude.

High-dimensional data often lie in low-dimensional subspaces corresponding to different classes they belong to. Finding sparse representations of data points in a dictionary built using the collection of data helps to uncover low-dimensional subspaces and address problems such as clustering, classification, subset selection and more. In this paper, we address the problem of recovering sparse representations for noisy data points in a dictionary whose columns correspond to corrupted data lying close to a union of subspaces. We consider a constrained $\ell_1$-minimization and study conditions under which the solution of the proposed optimization satisfies the approximate subspace-sparse recovery condition. More specifically, we show that each noisy data point, perturbed from a subspace by a noise of the magnitude of $\varepsilon$, will be reconstructed using data points from the same subspace with a small error of the order of $O(\varepsilon)$ and that the coefficients corresponding to data points in other subspaces will be sufficiently small, \ie, of the order of $O(\varepsilon)$. We do not impose any randomness assumption on the arrangement of subspaces or distribution of data points in each subspace. Our framework is based on a novel generalization of the null-space property to the setting where data lie in multiple subspaces, the number of data points in each subspace exceeds the dimension of the subspace, and all data points are corrupted by noise. Moreover, assuming a random distribution for data points, we further show that coefficients from the desired support not only reconstruct a given point with high accuracy, but also have sufficiently large values, \ie, of the order of $O(1)$.

Protein structure prediction has been a "grand challenge" problem in the structure biology over the last few decades. Protein quality assessment plays a very important role in protein structure prediction. In the paper, we propose a new protein quality assessment method which can predict both local and global quality of the protein 3D structural models. Our method uses both multi and single model quality assessment method for global quality assessment, and uses chemical, physical, geometrical features, and global quality score for local quality assessment. CASP9 targets are used to generate the features for local quality assessment. We evaluate the performance of our local quality assessment method on CASP10, which is comparable with two stage-of-art QA methods based on the average absolute distance between the real and predicted distance. In addition, we blindly tested our method on CASP11, and the good performance shows that combining single and multiple model quality assessment method could be a good way to improve the accuracy of model quality assessment, and the random forest technique could be used to train a good local quality assessment model.

The rapid growth of data size and accessibility in recent years has instigated a shift of philosophy in algorithm design for artificial intelligence. Instead of engineering algorithms by hand, the ability to learn composable systems automatically from massive amounts of data has led to ground-breaking performance in important domains such as computer vision, speech recognition, and natural language processing. The most popular class of techniques used in these domains is called deep learning, and is seeing significant attention from industry. However, these models require incredible amounts of data and compute power to train, and are limited by the need for better hardware acceleration to accommodate scaling beyond current data and model sizes. While the current solution has been to use clusters of graphics processing units (GPU) as general purpose processors (GPGPU), the use of field programmable gate arrays (FPGA) provide an interesting alternative. Current trends in design tools for FPGAs have made them more compatible with the high-level software practices typically practiced in the deep learning community, making FPGAs more accessible to those who build and deploy models. Since FPGA architectures are flexible, this could also allow researchers the ability to explore model-level optimizations beyond what is possible on fixed architectures such as GPUs. As well, FPGAs tend to provide high performance per watt of power consumption, which is of particular importance for application scientists interested in large scale server-based deployment or resource-limited embedded applications. This review takes a look at deep learning and FPGAs from a hardware acceleration perspective, identifying trends and innovations that make these technologies a natural fit, and motivates a discussion on how FPGAs may best serve the needs of the deep learning community moving forward.

We study a novel multi-armed bandit problem that models the challenge faced by a company wishing to explore new strategies to maximize revenue whilst simultaneously maintaining their revenue above a fixed baseline, uniformly over time. While previous work addressed the problem under the weaker requirement of maintaining the revenue constraint only at a given fixed time in the future, the algorithms previously proposed are unsuitable due to their design under the more stringent constraints. We consider both the stochastic and the adversarial settings, where we propose, natural, yet novel strategies and analyze the price for maintaining the constraints. Amongst other things, we prove both high probability and expectation bounds on the regret, while we also consider both the problem of maintaining the constraints with high probability or expectation. For the adversarial setting the price of maintaining the constraint appears to be higher, at least for the algorithm considered. A lower bound is given showing that the algorithm for the stochastic setting is almost optimal. Empirical results obtained in synthetic environments complement our theoretical findings.

Deep Gaussian processes (DGPs) are multi-layer hierarchical generalisations of Gaussian processes (GPs) and are formally equivalent to neural networks with multiple, infinitely wide hidden layers. DGPs are nonparametric probabilistic models and as such are arguably more flexible, have a greater capacity to generalise, and provide better calibrated uncertainty estimates than alternative deep models. This paper develops a new approximate Bayesian learning scheme that enables DGPs to be applied to a range of medium to large scale regression problems for the first time. The new method uses an approximate Expectation Propagation procedure and a novel and efficient extension of the probabilistic backpropagation algorithm for learning. We evaluate the new method for non-linear regression on eleven real-world datasets, showing that it always outperforms GP regression and is almost always better than state-of-the-art deterministic and sampling-based approximate inference methods for Bayesian neural networks. As a by-product, this work provides a comprehensive analysis of six approximate Bayesian methods for training neural networks.