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Causal Inference for Preprocessed Outcomes with an Application to Functional Connectivity

arXiv.org Machine Learning

In biomedical research, repeated measurements within each subject are often processed to remove artifacts and unwanted sources of variation. The resulting data are used to construct derived outcomes that act as proxies for scientific outcomes that are not directly observable. Although intra-subject processing is widely used, its impact on inter-subject statistical inference has not been systematically studied, and a principled framework for causal analysis in this setting is lacking. In this article, we propose a semiparametric framework for causal inference with derived outcomes obtained after intra-subject processing. This framework applies to settings with a modular structure, where intra-subject analyses are conducted independently across subjects and are followed by inter-subject analyses based on parameters from the intra-subject stage. We develop multiply robust estimators of causal parameters under rate conditions on both intra-subject and inter-subject models, which allows the use of flexible machine learning. We specialize the framework to a mediation setting and focus on the natural direct effect. For high dimensional inference, we employ a step-down procedure that controls the exceedance rate of the false discovery proportion. Simulation studies demonstrate the superior performance of the proposed approach. We apply our method to estimate the impact of stimulant medication on brain connectivity in children with autism spectrum disorder.


Learning Sequential Decisions from Multiple Sources via Group-Robust Markov Decision Processes

arXiv.org Machine Learning

We often collect data from multiple sites (e.g., hospitals) that share common structure but also exhibit heterogeneity. This paper aims to learn robust sequential decision-making policies from such offline, multi-site datasets. To model cross-site uncertainty, we study distributionally robust MDPs with a group-linear structure: all sites share a common feature map, and both the transition kernels and expected reward functions are linear in these shared features. We introduce feature-wise (d-rectangular) uncertainty sets, which preserve tractable robust Bellman recursions while maintaining key cross-site structure. Building on this, we then develop an offline algorithm based on pessimistic value iteration that includes: (i) per-site ridge regression for Bellman targets, (ii) feature-wise worst-case (row-wise minimization) aggregation, and (iii) a data-dependent pessimism penalty computed from the diagonals of the inverse design matrices. We further propose a cluster-level extension that pools similar sites to improve sample efficiency, guided by prior knowledge of site similarity. Under a robust partial coverage assumption, we prove a suboptimality bound for the resulting policy. Overall, our framework addresses multi-site learning with heterogeneous data sources and provides a principled approach to robust planning without relying on strong state-action rectangularity assumptions.


Fast Non-Episodic Finite-Horizon RL with K-Step Lookahead Thresholding

arXiv.org Machine Learning

Online reinforcement learning in non-episodic, finite-horizon MDPs remains underexplored and is challenged by the need to estimate returns to a fixed terminal time. Existing infinite-horizon methods, which often rely on discounted contraction, do not naturally account for this fixed-horizon structure. We introduce a modified Q-function: rather than targeting the full-horizon, we learn a K-step lookahead Q-function that truncates planning to the next K steps. To further improve sample efficiency, we introduce a thresholding mechanism: actions are selected only when their estimated K-step lookahead value exceeds a time-varying threshold. We provide an efficient tabular learning algorithm for this novel objective, proving it achieves fast finite-sample convergence: it achieves minimax optimal constant regret for $K=1$ and $\mathcal{O}(\max((K-1),C_{K-1})\sqrt{SAT\log(T)})$ regret for any $K \geq 2$. We numerically evaluate the performance of our algorithm under the objective of maximizing reward. Our implementation adaptively increases K over time, balancing lookahead depth against estimation variance. Empirical results demonstrate superior cumulative rewards over state-of-the-art tabular RL methods across synthetic MDPs and RL environments: JumpRiverswim, FrozenLake and AnyTrading.


C-kNN-LSH: A Nearest-Neighbor Algorithm for Sequential Counterfactual Inference

arXiv.org Machine Learning

Estimating causal effects from longitudinal trajectories is central to understanding the progression of complex conditions and optimizing clinical decision-making, such as comorbidities and long COVID recovery. We introduce \emph{C-kNN--LSH}, a nearest-neighbor framework for sequential causal inference designed to handle such high-dimensional, confounded situations. By utilizing locality-sensitive hashing, we efficiently identify ``clinical twins'' with similar covariate histories, enabling local estimation of conditional treatment effects across evolving disease states. To mitigate bias from irregular sampling and shifting patient recovery profiles, we integrate neighborhood estimator with a doubly-robust correction. Theoretical analysis guarantees our estimator is consistent and second-order robust to nuisance error. Evaluated on a real-world Long COVID cohort with 13,511 participants, \emph{C-kNN-LSH} demonstrates superior performance in capturing recovery heterogeneity and estimating policy values compared to existing baselines.


Zero-Flow Encoders

arXiv.org Machine Learning

Flow-based methods have achieved significant success in various generative modeling tasks, capturing nuanced details within complex data distributions. However, few existing works have exploited this unique capability to resolve fine-grained structural details beyond generation tasks. This paper presents a flow-inspired framework for representation learning. First, we demonstrate that a rectified flow trained using independent coupling is zero everywhere at $t=0.5$ if and only if the source and target distributions are identical. We term this property the \emph{zero-flow criterion}. Second, we show that this criterion can certify conditional independence, thereby extracting \emph{sufficient information} from the data. Third, we translate this criterion into a tractable, simulation-free loss function that enables learning amortized Markov blankets in graphical models and latent representations in self-supervised learning tasks. Experiments on both simulated and real-world datasets demonstrate the effectiveness of our approach. The code reproducing our experiments can be found at: https://github.com/probabilityFLOW/zfe.


Transfer Learning Through Conditional Quantile Matching

arXiv.org Machine Learning

We introduce a transfer learning framework for regression that leverages heterogeneous source domains to improve predictive performance in a data-scarce target domain. Our approach learns a conditional generative model separately for each source domain and calibrates the generated responses to the target domain via conditional quantile matching. This distributional alignment step corrects general discrepancies between source and target domains without imposing restrictive assumptions such as covariate or label shift. The resulting framework provides a principled and flexible approach to high-quality data augmentation for downstream learning tasks in the target domain. From a theoretical perspective, we show that an empirical risk minimizer (ERM) trained on the augmented dataset achieves a tighter excess risk bound than the target-only ERM under mild conditions. In particular, we establish new convergence rates for the quantile matching estimator that governs the transfer bias-variance tradeoff. From a practical perspective, extensive simulations and real data applications demonstrate that the proposed method consistently improves prediction accuracy over target-only learning and competing transfer learning methods.


Online Social Welfare Function-based Resource Allocation

arXiv.org Machine Learning

In many real-world settings, a centralized decision-maker must repeatedly allocate finite resources to a population over multiple time steps. Individuals who receive a resource derive some stochastic utility; to characterize the population-level effects of an allocation, the expected individual utilities are then aggregated using a social welfare function (SWF). We formalize this setting and present a general confidence sequence framework for SWF-based online learning and inference, valid for any monotonic, concave, and Lipschitz-continuous SWF. Our key insight is that monotonicity alone suffices to lift confidence sequences from individual utilities to anytime-valid bounds on optimal welfare. Building on this foundation, we propose SWF-UCB, a SWF-agnostic online learning algorithm that achieves near-optimal $\tilde{O}(n+\sqrt{nkT})$ regret (for $k$ resources distributed among $n$ individuals at each of $T$ time steps). We instantiate our framework on three normatively distinct SWF families: Weighted Power Mean, Kolm, and Gini, providing bespoke oracle algorithms for each. Experiments confirm $\sqrt{T}$ scaling and reveal rich interactions between $k$ and SWF parameters. This framework naturally supports inference applications such as sequential hypothesis testing, optimal stopping, and policy evaluation.


Theoretical Analysis of Measure Consistency Regularization for Partially Observed Data

arXiv.org Machine Learning

The problem of corrupted data, missing features, or missing modalities continues to plague the modern machine learning landscape. To address this issue, a class of regularization methods that enforce consistency between imputed and fully observed data has emerged as a promising approach for improving model generalization, particularly in partially observed settings. We refer to this class of methods as Measure Consistency Regularization (MCR). Despite its empirical success in various applications, such as image inpainting, data imputation and semi-supervised learning, a fundamental understanding of the theoretical underpinnings of MCR remains limited. This paper bridges this gap by offering theoretical insights into why, when, and how MCR enhances imputation quality under partial observability, viewed through the lens of neural network distance. Our theoretical analysis identifies the term responsible for MCR's generalization advantage and extends to the imperfect training regime, demonstrating that this advantage is not always guaranteed. Guided by these insights, we propose a novel training protocol that monitors the duality gap to determine an early stopping point that preserves the generalization benefit. We then provide detailed empirical evidence to support our theoretical claims and to show the effectiveness and accuracy of our proposed stopping condition. We further provide a set of real-world data simulations to show the versatility of MCR under different model architectures designed for different data sources.


Training-free score-based diffusion for parameter-dependent stochastic dynamical systems

arXiv.org Machine Learning

Simulating parameter-dependent stochastic differential equations (SDEs) presents significant computational challenges, as separate high-fidelity simulations are typically required for each parameter value of interest. Despite the success of machine learning methods in learning SDE dynamics, existing approaches either require expensive neural network training for score function estimation or lack the ability to handle continuous parameter dependence. We present a training-free conditional diffusion model framework for learning stochastic flow maps of parameter-dependent SDEs, where both drift and diffusion coefficients depend on physical parameters. The key technical innovation is a joint kernel-weighted Monte Carlo estimator that approximates the conditional score function using trajectory data sampled at discrete parameter values, enabling interpolation across both state space and the continuous parameter domain. Once trained, the resulting generative model produces sample trajectories for any parameter value within the training range without retraining, significantly accelerating parameter studies, uncertainty quantification, and real-time filtering applications. The performance of the proposed approach is demonstrated via three numerical examples of increasing complexity, showing accurate approximation of conditional distributions across varying parameter values.


Neuron Block Dynamics for XOR Classification with Zero-Margin

arXiv.org Machine Learning

The ability of neural networks to learn useful features through stochastic gradient descent (SGD) is a cornerstone of their success. Most theoretical analyses focus on regression or on classification tasks with a positive margin, where worst-case gradient bounds suffice. In contrast, we study zero-margin nonlinear classification by analyzing the Gaussian XOR problem, where inputs are Gaussian and the XOR decision boundary determines labels. In this setting, a non-negligible fraction of data lies arbitrarily close to the boundary, breaking standard margin-based arguments. Building on Glasgow's (2024) analysis, we extend the study of training dynamics from discrete to Gaussian inputs and develop a framework for the dynamics of neuron blocks. We show that neurons cluster into four directions and that block-level signals evolve coherently, a phenomenon essential in the Gaussian setting where individual neuron signals vary significantly. Leveraging this block perspective, we analyze generalization without relying on margin assumptions, adopting an average-case view that distinguishes regions of reliable prediction from regions of persistent error. Numerical experiments confirm the predicted two-phase block dynamics and demonstrate their robustness beyond the Gaussian setting.