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Variance-Gated Ensembles: An Epistemic-Aware Framework for Uncertainty Estimation
Gillis, H. Martin, Xu, Isaac, Trappenberg, Thomas
Machine learning applications require fast and reliable per-sample uncertainty estimation. A common approach is to use predictive distributions from Bayesian or approximation methods and additively decompose uncertainty into aleatoric (i.e., data-related) and epistemic (i.e., model-related) components. However, additive decomposition has recently been questioned, with evidence that it breaks down when using finite-ensemble sampling and/or mismatched predictive distributions. This paper introduces Variance-Gated Ensembles (VGE), an intuitive, differentiable framework that injects epistemic sensitivity via a signal-to-noise gate computed from ensemble statistics. VGE provides: (i) a Variance-Gated Margin Uncertainty (VGMU) score that couples decision margins with ensemble predictive variance; and (ii) a Variance-Gated Normalization (VGN) layer that generalizes the variance-gated uncertainty mechanism to training via per-class, learnable normalization of ensemble member probabilities. We derive closed-form vector-Jacobian products enabling end-to-end training through ensemble sample mean and variance. VGE matches or exceeds state-of-the-art information-theoretic baselines while remaining computationally efficient. As a result, VGE provides a practical and scalable approach to epistemic-aware uncertainty estimation in ensemble models. An open-source implementation is available at: https://github.com/nextdevai/vge.
Near-optimal Swap Regret Minimization for Convex Losses
Hu, Lunjia, Schneider, Jon, Wu, Yifan
We give a randomized online algorithm that guarantees near-optimal $\widetilde O(\sqrt T)$ expected swap regret against any sequence of $T$ adaptively chosen Lipschitz convex losses on the unit interval. This improves the previous best bound of $\widetilde O(T^{2/3})$ and answers an open question of Fishelson et al. [2025b]. In addition, our algorithm is efficient: it runs in $\mathsf{poly}(T)$ time. A key technical idea we develop to obtain this result is to discretize the unit interval into bins at multiple scales of granularity and simultaneously use all scales to make randomized predictions, which we call multi-scale binning and may be of independent interest. A direct corollary of our result is an efficient online algorithm for minimizing the calibration error for general elicitable properties. This result does not require the Lipschitzness assumption of the identification function needed in prior work, making it applicable to median calibration, for which we achieve the first $\widetilde O(\sqrt T)$ calibration error guarantee.
Schrödinger bridge problem via empirical risk minimization
Belomestny, Denis, Naumov, Alexey, Puchkin, Nikita, Suchkov, Denis
We study the Schrödinger bridge problem when the endpoint distributions are available only through samples. Classical computational approaches estimate Schrödinger potentials via Sinkhorn iterations on empirical measures and then construct a time-inhomogeneous drift by differentiating a kernel-smoothed dual solution. In contrast, we propose a learning-theoretic route: we rewrite the Schrödinger system in terms of a single positive transformed potential that satisfies a nonlinear fixed-point equation and estimate this potential by empirical risk minimization over a function class. We establish uniform concentration of the empirical risk around its population counterpart under sub-Gaussian assumptions on the reference kernel and terminal density. We plug the learned potential into a stochastic control representation of the bridge to generate samples. We illustrate performance of the suggested approach with numerical experiments.
GEMSS: A Variational Bayesian Method for Discovering Multiple Sparse Solutions in Classification and Regression Problems
Henclová, Kateřina, Šmídl, Václav
Selecting interpretable feature sets in underdetermined ($n \ll p$) and highly correlated regimes constitutes a fundamental challenge in data science, particularly when analyzing physical measurements. In such settings, multiple distinct sparse subsets may explain the response equally well. Identifying these alternatives is crucial for generating domain-specific insights into the underlying mechanisms, yet conventional methods typically isolate a single solution, obscuring the full spectrum of plausible explanations. We present GEMSS (Gaussian Ensemble for Multiple Sparse Solutions), a variational Bayesian framework specifically designed to simultaneously discover multiple, diverse sparse feature combinations. The method employs a structured spike-and-slab prior for sparsity, a mixture of Gaussians to approximate the intractable multimodal posterior, and a Jaccard-based penalty to further control solution diversity. Unlike sequential greedy approaches, GEMSS optimizes the entire ensemble of solutions within a single objective function via stochastic gradient descent. The method is validated on a comprehensive benchmark comprising 128 synthetic experiments across classification and regression tasks. Results demonstrate that GEMSS scales effectively to high-dimensional settings ($p=5000$) with sample size as small as $n = 50$, generalizes seamlessly to continuous targets, handles missing data natively, and exhibits remarkable robustness to class imbalance and Gaussian noise. GEMSS is available as a Python package 'gemss' at PyPI. The full GitHub repository at https://github.com/kat-er-ina/gemss/ also includes a free, easy-to-use application suitable for non-coders.
Mutual information and task-relevant latent dimensionality
Gulati, Paarth, Abdelaleem, Eslam, Sederberg, Audrey, Nemenman, Ilya
Estimating the dimensionality of the latent representation needed for prediction-- the task-relevant dimension--is a difficult, largely unsolved problem with broad scientific applications. We cast it as an Information Bottleneck question: what embedding bottleneck dimension is sufficient to compress predictor and predicted views while preserving their mutual information (MI). We show that standard neural estimators with separable/bilinear critics systematically inflate the inferred dimension, and we address this by introducing a hybrid critic that retains an explicit dimensional bottleneck while allowing flexible nonlinear cross-view interactions, thereby preserving the latent geometry. We further propose a one-shot protocol that reads off the effective dimension from a single over-parameterized hybrid model, without sweeping over bottleneck sizes. We validate the approach on synthetic problems with known task-relevant dimension. We extend the approach to intrinsic dimensionality by constructing paired views of a single dataset, enabling comparison with classical geometric dimension estimators. In noisy regimes where those estimators degrade, our approach remains reliable. Finally, we demonstrate the utility of the method on multiple physics datasets. Before "low-dimensional latent embeddings" became a rallying cry of AI, they were already a basic aim of science: identify a low-dimensional state--a small set of degrees of freedom constructed from observations--that suffices to predict the quantities of interest. The long road from Aristotelian to Newtonian mechanics illustrates that determining the number of such state variables--the relevant latent dimensionality--can be hard, even before one argues about the right variables or the laws that relate them.
Statistical inference after variable selection in Cox models: A simulation study
Schemet, Lena, Friedrich-Welz, Sarah
Choosing relevant predictors is central to the analysis of biomedical time-to-event data. Classical frequentist inference, however, presumes that the set of covariates is fixed in advance and does not account for data-driven variable selection. As a consequence, naive post-selection inference may be biased and misleading. In right-censored survival settings, these issues may be further exacerbated by the additional uncertainty induced by censoring. We investigate several inference procedures applied after variable selection for the coefficients of the Lasso and its extension, the adaptive Lasso, in the context of the Cox model. The methods considered include sample splitting, exact post-selection inference, and the debiased Lasso. Their performance is examined in a neutral simulation study reflecting realistic covariate structures and censoring rates commonly encountered in biomedical applications. To complement the simulation results, we illustrate the practical behavior of these procedures in an applied example using a publicly available survival dataset.
Cutting Through the Noise: On-the-fly Outlier Detection for Robust Training of Machine Learning Interatomic Potentials
Lam, Terry C. W., O'Neill, Niamh, Schran, Christoph, Schaaf, Lars L.
The accuracy of machine learning interatomic potentials suffers from reference data that contains numerical noise. Often originating from unconverged or inconsistent electronic-structure calculations, this noise is challenging to identify. Existing mitigation strategies such as manual filtering or iterative refinement of outliers, require either substantial expert effort or multiple expensive retraining cycles, making them difficult to scale to large datasets. Here, we introduce an on-the-fly outlier detection scheme that automatically down-weights noisy samples, without requiring additional reference calculations. By tracking the loss distribution via an exponential moving average, this unsupervised method identifies outliers throughout a single training run. We show that this approach prevents overfitting and matches the performance of iterative refinement baselines with significantly reduced overhead. The method's effectiveness is demonstrated by recovering accurate physical observables for liquid water from unconverged reference data, including diffusion coefficients. Furthermore, we validate its scalability by training a foundation model for organic chemistry on the SPICE dataset, where it reduces energy errors by a factor of three. This framework provides a simple, automated solution for training robust models on imperfect datasets across dataset sizes.
All ERMs Can Fail in Stochastic Convex Optimization Lower Bounds in Linear Dimension
We study the sample complexity of the best-case Empirical Risk Minimizer in the setting of stochastic convex optimization. We show that there exists an instance in which the sample size is linear in the dimension, learning is possible, but the Empirical Risk Minimizer is likely to be unique and to overfit. This resolves an open question by Feldman. We also extend this to approximate ERMs. Building on our construction we also show that (constrained) Gradient Descent potentially overfits when horizon and learning rate grow w.r.t sample size. Specifically we provide a novel generalization lower bound of $Ω\left(\sqrt{ηT/m^{1.5}}\right)$ for Gradient Descent, where $η$ is the learning rate, $T$ is the horizon and $m$ is the sample size. This narrows down, exponentially, the gap between the best known upper bound of $O(ηT/m)$ and existing lower bounds from previous constructions.
Noise Stability of Transformer Models
Haris, Themistoklis, Zhang, Zihan, Yoshida, Yuichi
Understanding simplicity biases in deep learning offers a promising path toward developing reliable AI. A common metric for this, inspired by Boolean function analysis, is average sensitivity, which captures a model's robustness to single-token perturbations. We argue that average sensitivity has two key limitations: it lacks a natural generalization to real-valued domains and fails to explain the "junta-like" input dependence we empirically observe in modern LLMs. To address these limitations, we propose noise stability as a more comprehensive simplicity metric. Noise stability expresses a model's robustness to correlated noise applied to all input coordinates simultaneously. We provide a theoretical analysis of noise stability for single-layer attention and ReLU MLP layers and tackle the multi-layer propagation problem with a covariance interval propagation approach. Building on this theory, we develop a practical noise stability regularization method. Experiments on algorithmic and next-token-prediction tasks show that our regularizer consistently catalyzes grokking and accelerates training by approximately 35% and 75% respectively. Simplicity Biases have been a promising direction of study in recent years (Shah et al., 2020; V a-sudeva et al., 2024; Bhattamishra et al., 2022) as they provide a unifying framework for generalization, interpretability and robustness. Neural networks, including Large Language Models (LLMs), often converge to the simplest possible functions that explain the training data.
Optimal Decision-Making Based on Prediction Sets
Prediction sets can wrap around any ML model to cover unknown test outcomes with a guaranteed probability. Yet, it remains unclear how to use them optimally for downstream decision-making. Here, we propose a decision-theoretic framework that seeks to minimize the expected loss (risk) against a worst-case distribution consistent with the prediction set's coverage guarantee. We first characterize the minimax optimal policy for a fixed prediction set, showing that it balances the worst-case loss inside the set with a penalty for potential losses outside the set. Building on this, we derive the optimal prediction set construction that minimizes the resulting robust risk subject to a coverage constraint. Finally, we introduce Risk-Optimal Conformal Prediction (ROCP), a practical algorithm that targets these risk-minimizing sets while maintaining finite-sample distribution-free marginal coverage. Empirical evaluations on medical diagnosis and safety-critical decision-making tasks demonstrate that ROCP reduces critical mistakes compared to baselines, particularly when out-of-set errors are costly.