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LLaVA-Surg: Towards Multimodal Surgical Assistant via Structured Surgical Video Learning

arXiv.org Artificial Intelligence

Multimodal large language models (LLMs) have achieved notable success across various domains, while research in the medical field has largely focused on unimodal images. Meanwhile, current general-domain multimodal models for videos still lack the capabilities to understand and engage in conversations about surgical videos. One major contributing factor is the absence of datasets in the surgical field. In this paper, we create a new dataset, Surg-QA, consisting of 102,000 surgical video-instruction pairs, the largest of its kind so far. To build such a dataset, we propose a novel two-stage question-answer generation pipeline with LLM to learn surgical knowledge in a structured manner from the publicly available surgical lecture videos. The pipeline breaks down the generation process into two stages to significantly reduce the task complexity, allowing us to use a more affordable, locally deployed open-source LLM than the premium paid LLM services. It also mitigates the risk of LLM hallucinations during question-answer generation, thereby enhancing the overall quality of the generated data. We further train LLaVA-Surg, a novel vision-language conversational assistant capable of answering open-ended questions about surgical videos, on this Surg-QA dataset, and conduct comprehensive evaluations on zero-shot surgical video question-answering tasks. We show that LLaVA-Surg significantly outperforms all previous general-domain models, demonstrating exceptional multimodal conversational skills in answering open-ended questions about surgical videos. We will release our code, model, and the instruction-tuning dataset.


Causal Discovery from Time-Series Data with Short-Term Invariance-Based Convolutional Neural Networks

arXiv.org Artificial Intelligence

Causal discovery from time-series data aims to capture both intra-slice (contemporaneous) and inter-slice (time-lagged) causality between variables within the temporal chain, which is crucial for various scientific disciplines. Compared to causal discovery from non-time-series data, causal discovery from time-series data necessitates more serialized samples with a larger amount of observed time steps. To address the challenges, we propose a novel gradient-based causal discovery approach STIC, which focuses on \textbf{S}hort-\textbf{T}erm \textbf{I}nvariance using \textbf{C}onvolutional neural networks to uncover the causal relationships from time-series data. Specifically, STIC leverages both the short-term time and mechanism invariance of causality within each window observation, which possesses the property of independence, to enhance sample efficiency. Furthermore, we construct two causal convolution kernels, which correspond to the short-term time and mechanism invariance respectively, to estimate the window causal graph. To demonstrate the necessity of convolutional neural networks for causal discovery from time-series data, we theoretically derive the equivalence between convolution and the underlying generative principle of time-series data under the assumption that the additive noise model is identifiable. Experimental evaluations conducted on both synthetic and FMRI benchmark datasets demonstrate that our STIC outperforms baselines significantly and achieves the state-of-the-art performance, particularly when the datasets contain a limited number of observed time steps. Code is available at \url{https://github.com/HITshenrj/STIC}.


The AI Risk Repository: A Comprehensive Meta-Review, Database, and Taxonomy of Risks From Artificial Intelligence

arXiv.org Artificial Intelligence

The risks posed by Artificial Intelligence (AI) are of considerable concern to academics, auditors, policymakers, AI companies, and the public. However, a lack of shared understanding of AI risks can impede our ability to comprehensively discuss, research, and react to them. This paper addresses this gap by creating an AI Risk Repository to serve as a common frame of reference. This comprises a living database of 777 risks extracted from 43 taxonomies, which can be filtered based on two overarching taxonomies and easily accessed, modified, and updated via our website and online spreadsheets. We construct our Repository with a systematic review of taxonomies and other structured classifications of AI risk followed by an expert consultation. We develop our taxonomies of AI risk using a best-fit framework synthesis. Our high-level Causal Taxonomy of AI Risks classifies each risk by its causal factors (1) Entity: Human, AI; (2) Intentionality: Intentional, Unintentional; and (3) Timing: Pre-deployment; Post-deployment. Our mid-level Domain Taxonomy of AI Risks classifies risks into seven AI risk domains: (1) Discrimination & toxicity, (2) Privacy & security, (3) Misinformation, (4) Malicious actors & misuse, (5) Human-computer interaction, (6) Socioeconomic & environmental, and (7) AI system safety, failures, & limitations. These are further divided into 23 subdomains. The AI Risk Repository is, to our knowledge, the first attempt to rigorously curate, analyze, and extract AI risk frameworks into a publicly accessible, comprehensive, extensible, and categorized risk database. This creates a foundation for a more coordinated, coherent, and complete approach to defining, auditing, and managing the risks posed by AI systems.


When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications?

arXiv.org Artificial Intelligence

The introduction of Large Language Models (LLMs) has advanced data representation and analysis, bringing significant progress in their use for medical questions and answering. Despite these advancements, integrating tabular data, especially numerical data pivotal in clinical contexts, into LLM paradigms has not been thoroughly explored. In this study, we examine the effectiveness of vector representations from last hidden states of LLMs for medical diagnostics and prognostics using electronic health record (EHR) data. We compare the performance of these embeddings with that of raw numerical EHR data when used as feature inputs to traditional machine learning (ML) algorithms that excel at tabular data learning, such as eXtreme Gradient Boosting. We focus on instruction-tuned LLMs in a zero-shot setting to represent abnormal physiological data and evaluating their utilities as feature extractors to enhance ML classifiers for predicting diagnoses, length of stay, and mortality. Furthermore, we examine prompt engineering techniques on zero-shot and few-shot LLM embeddings to measure their impact comprehensively. Although findings suggest the raw data features still prevails in medical ML tasks, zero-shot LLM embeddings demonstrate competitive results, suggesting a promising avenue for future research in medical applications.


MetaSeg: MetaFormer-based Global Contexts-aware Network for Efficient Semantic Segmentation

arXiv.org Artificial Intelligence

Beyond the Transformer, it is important to explore how to exploit the capacity of the MetaFormer, an architecture that is fundamental to the performance improvements of the Transformer. Previous studies have exploited it only for the backbone network. Unlike previous studies, we explore the capacity of the Metaformer architecture more extensively in the semantic segmentation task. We propose a powerful semantic segmentation network, MetaSeg, which leverages the Metaformer architecture from the backbone to the decoder. Our MetaSeg shows that the MetaFormer architecture plays a significant role in capturing the useful contexts for the decoder as well as for the backbone. In addition, recent segmentation methods have shown that using a CNN-based backbone for extracting the spatial information and a decoder for extracting the global information is more effective than using a transformer-based backbone with a CNN-based decoder. This motivates us to adopt the CNN-based backbone using the MetaFormer block and design our MetaFormer-based decoder, which consists of a novel self-attention module to capture the global contexts. To consider both the global contexts extraction and the computational efficiency of the self-attention for semantic segmentation, we propose a Channel Reduction Attention (CRA) module that reduces the channel dimension of the query and key into the one dimension. In this way, our proposed MetaSeg outperforms the previous state-of-the-art methods with more efficient computational costs on popular semantic segmentation and a medical image segmentation benchmark, including ADE20K, Cityscapes, COCO-stuff, and Synapse. The code is available at https://github.com/hyunwoo137/MetaSeg.


LLMI3D: Empowering LLM with 3D Perception from a Single 2D Image

arXiv.org Artificial Intelligence

Recent advancements in autonomous driving, augmented reality, robotics, and embodied intelligence have necessitated 3D perception algorithms. However, current 3D perception methods, particularly small models, struggle with processing logical reasoning, question-answering, and handling open scenario categories. On the other hand, generative multimodal large language models (MLLMs) excel in general capacity but underperform in 3D tasks, due to weak spatial and local object perception, poor text-based geometric numerical output, and inability to handle camera focal variations. To address these challenges, we propose the following solutions: Spatial-Enhanced Local Feature Mining for better spatial feature extraction, 3D Query Token-Derived Info Decoding for precise geometric regression, and Geometry Projection-Based 3D Reasoning for handling camera focal length variations. We employ parameter-efficient fine-tuning for a pre-trained MLLM and develop LLMI3D, a powerful 3D perception MLLM. Additionally, we have constructed the IG3D dataset, which provides fine-grained descriptions and question-answer annotations. Extensive experiments demonstrate that our LLMI3D achieves state-of-the-art performance, significantly outperforming existing methods.


"Normalized Stress" is Not Normalized: How to Interpret Stress Correctly

arXiv.org Artificial Intelligence

Stress is among the most commonly employed quality metrics and optimization criteria for dimension reduction projections of high dimensional data. Complex, high dimensional data is ubiquitous across many scientific disciplines, including machine learning, biology, and the social sciences. One of the primary methods of visualizing these datasets is with two dimensional scatter plots that visually capture some properties of the data. Because visually determining the accuracy of these plots is challenging, researchers often use quality metrics to measure projection accuracy or faithfulness to the full data. One of the most commonly employed metrics, normalized stress, is sensitive to uniform scaling of the projection, despite this act not meaningfully changing anything about the projection. We investigate the effect of scaling on stress and other distance based quality metrics analytically and empirically by showing just how much the values change and how this affects dimension reduction technique evaluations. We introduce a simple technique to make normalized stress scale invariant and show that it accurately captures expected behavior on a small benchmark.


An Efficient and Explanatory Image and Text Clustering System with Multimodal Autoencoder Architecture

arXiv.org Artificial Intelligence

We demonstrate the efficiencies and explanatory abilities of extensions to the common tools of Autoencoders and LLM interpreters, in the novel context of comparing different cultural approaches to the same international news event. We develop a new Convolutional-Recurrent Variational Autoencoder (CRVAE) model that extends the modalities of previous CVAE models, by using fully-connected latent layers to embed in parallel the CNN encodings of video frames, together with the LSTM encodings of their related text derived from audio. We incorporate the model within a larger system that includes frame-caption alignment, latent space vector clustering, and a novel LLM-based cluster interpreter. We measure, tune, and apply this system to the task of summarizing a video into three to five thematic clusters, with each theme described by ten LLM-produced phrases. We apply this system to two news topics, COVID-19 and the Winter Olympics, and five other topics are in progress.


Operator Feature Neural Network for Symbolic Regression

arXiv.org Artificial Intelligence

Symbolic regression is a task aimed at identifying patterns in data and representing them through mathematical expressions, generally involving skeleton prediction and constant optimization. Many methods have achieved some success, however they treat variables and symbols merely as characters of natural language without considering their mathematical essence. This paper introduces the operator feature neural network (OF-Net) which employs operator representation for expressions and proposes an implicit feature encoding method for the intrinsic mathematical operational logic of operators. By substituting operator features for numeric loss, we can predict the combination of operators of target expressions. We evaluate the model on public datasets, and the results demonstrate that the model achieves superior recovery rates and high $R^2$ scores. With the discussion of the results, we analyze the merit and demerit of OF-Net and propose optimizing schemes.


Latent Anomaly Detection Through Density Matrices

arXiv.org Machine Learning

This paper introduces a novel anomaly detection framework that combines the robust statistical principles of density-estimation-based anomaly detection methods with the representation-learning capabilities of deep learning models. The method originated from this framework is presented in two different versions: a shallow approach employing a density-estimation model based on adaptive Fourier features and density matrices, and a deep approach that integrates an autoencoder to learn a low-dimensional representation of the data. By estimating the density of new samples, both methods are able to find normality scores. The methods can be seamlessly integrated into an end-to-end architecture and optimized using gradient-based optimization techniques. To evaluate their performance, extensive experiments were conducted on various benchmark datasets. The results demonstrate that both versions of the method can achieve comparable or superior performance when compared to other state-of-the-art methods. Notably, the shallow approach performs better on datasets with fewer dimensions, while the autoencoder-based approach shows improved performance on datasets with higher dimensions.