Document-level Event Argument Extraction (EAE) faces two challenges due to increased input length: 1) difficulty in distinguishing semantic boundaries between events, and 2) interference from redundant information. To address these issues, we propose two methods. The first method introduces the Co and Structure Event Argument Extraction model (CsEAE) based on Small Language Models (SLMs). CsEAE includes a co-occurrences-aware module, which integrates information about all events present in the current input through context labeling and co-occurrences event prompts extraction. Additionally, CsEAE includes a structure-aware module that reduces interference from redundant information by establishing structural relationships between the sentence containing the trigger and other sentences in the document. The second method introduces new prompts to transform the extraction task into a generative task suitable for Large Language Models (LLMs), addressing gaps in EAE performance using LLMs under Supervised Fine-Tuning (SFT) conditions. We also fine-tuned multiple datasets to develop an LLM that performs better across most datasets. Finally, we applied insights from CsEAE to LLMs, achieving further performance improvements. This suggests that reliable insights validated on SLMs are also applicable to LLMs. We tested our models on the Rams, WikiEvents, and MLEE datasets. The CsEAE model achieved improvements of 2.1\%, 2.3\%, and 3.2\% in the Arg-C F1 metric compared to the baseline, PAIE~\cite{PAIE}. For LLMs, we demonstrated that their performance on document-level datasets is comparable to that of SLMs~\footnote{All code is available at https://github.com/simon-p-j-r/CsEAE}.

Bayes' rule naturally allows for inference refinement in a streaming fashion, without the need to recompute posteriors from scratch whenever new data arrives. In principle, Bayesian streaming is straightforward: we update our prior with the available data and use the resulting posterior as a prior when processing the next data chunk. In practice, however, this recipe entails i) approximating an intractable posterior at each time step; and ii) encapsulating results appropriately to allow for posterior propagation. For continuous state spaces, variational inference (VI) is particularly convenient due to its scalability and the tractability of variational posteriors. For discrete state spaces, however, state-of-the-art VI results in analytically intractable approximations that are ill-suited for streaming settings. To enable streaming Bayesian inference over discrete parameter spaces, we propose streaming Bayes GFlowNets (abbreviated as SB-GFlowNets) by leveraging the recently proposed GFlowNets -- a powerful class of amortized samplers for discrete compositional objects. Notably, SB-GFlowNet approximates the initial posterior using a standard GFlowNet and subsequently updates it using a tailored procedure that requires only the newly observed data. Our case studies in linear preference learning and phylogenetic inference showcase the effectiveness of SB-GFlowNets in sampling from an unnormalized posterior in a streaming setting. As expected, we also observe that SB-GFlowNets is significantly faster than repeatedly training a GFlowNet from scratch to sample from the full posterior.

Graph neural networks (GNNs) have become essential tools for analyzing non-Euclidean data across various domains. During training stage, sampling plays an important role in reducing latency by limiting the number of nodes processed, particularly in large-scale applications. However, as the demand for better prediction performance grows, existing sampling algorithms become increasingly complex, leading to significant overhead. To mitigate this, we propose YOSO (You-Only-Sample-Once), an algorithm designed to achieve efficient training while preserving prediction accuracy. YOSO introduces a compressed sensing (CS)-based sampling and reconstruction framework, where nodes are sampled once at input layer, followed by a lossless reconstruction at the output layer per epoch. By integrating the reconstruction process with the loss function of specific learning tasks, YOSO not only avoids costly computations in traditional compressed sensing (CS) methods, such as orthonormal basis calculations, but also ensures high-probability accuracy retention which equivalent to full node participation. Experimental results on node classification and link prediction demonstrate the effectiveness and efficiency of YOSO, reducing GNN training by an average of 75\% compared to state-of-the-art methods, while maintaining accuracy on par with top-performing baselines.

Generating long sequences of tokens given a long-context input imposes a heavy computational burden for large language models (LLMs). One of the computational bottleneck comes from computing attention over a long sequence of input at each generation step. In this paper, we propose Recycled Attention, an inferencetime method which alternates between full context attention and attention over a subset of input tokens. When performing partial attention, we recycle the attention pattern of a previous token that has performed full attention and attend only to the top K most attended tokens, reducing the cost of data movement and attention computation. Compared to previously proposed inference-time acceleration method which attends only to local context or tokens with high accumulative attention scores, our approach flexibly chooses tokens that are relevant to the current decoding step. We evaluate our methods on RULER, a suite of tasks designed to comprehensively evaluate long-context abilities, and long-context language modeling tasks. Applying our method to off-the-shelf LLMs achieves comparable speedup to baselines which only consider local context while improving the performance by 2x. We further explore two ideas to improve performance-efficiency trade-offs: (1) dynamically decide when to perform recycled or full attention step based on the query similarities and (2) continued pre-training the model with Recycled Attention. Large language models (LLMs) are trained to ingest extremely long inputs and generate long outputs (Meta, 2024; Gemini, 2024) to support a wide range of applications. However, deploying such long-context LLMs can be very costly. As the context length increases, LLMs see a linear increase in memory to store the Key-Value (KV) cache and a quadratic increase in time for attention computation.

The exponential growth in data availability in recent years has led to new formulations of data-driven optimization problems. One such formulation is that of stochastic optimization problems with contextual information, where the goal is to optimize the expected value of a certain function given some contextual information (also called features) that accompany the main data of interest. The contextual information then allows for a better estimation of the quantity of interest via machine learning methods, thereby leading to better solutions. Oftentimes, however, machine learning methods yield just a pointwise estimate instead of an entire distribution. In this paper we show that, when the problem to be solved is a class of two-stage stochastic programs (namely, those with fixed recourse matrix and fixed costs), under mild assumptions the problem can be solved with just one scenario. While such a scenario - which does not have be unique - is usually unknown, we present an integrated learning and optimization procedure that yields the best approximation of that scenario within the modeler's pre-specified set of parameterized forecast functions. Numerical results conducted with inventory problems from the literature (with synthetic data) as well as a bike-sharing problem with real data demonstrate that the proposed approach performs well when compared to benchmark methods from the literature.

Our paper presents a methodology to study the heterogeneous effects of economy-wide shocks and applies it to the case of the impact of the COVID-19 crisis on exports. This methodology is applicable in scenarios where the pervasive nature of the shock hinders the identification of a control group unaffected by the shock, as well as the ex-ante definition of the intensity of the shock's exposure of each unit. In particular, our study investigates the effectiveness of various Machine Learning (ML) techniques in predicting firms' trade and, by building on recent developments in causal ML, uses these predictions to reconstruct the counterfactual distribution of firms' trade under different COVID-19 scenarios and to study treatment effect heterogeneity. Specifically, we focus on the probability of Colombian firms surviving in the export market under two different scenarios: a COVID-19 setting and a non-COVID-19 counterfactual situation. On average, we find that the COVID-19 shock decreased a firm's probability of surviving in the export market by about 20 percentage points in April 2020. We study the treatment effect heterogeneity by employing a classification analysis that compares the characteristics of the firms on the tails of the estimated distribution of the individual treatment effects.

In drug discovery, accurate lung tumor segmentation is an important step for assessing tumor size and its progression using \textit{in-vivo} imaging such as MRI. While deep learning models have been developed to automate this process, the focus has predominantly been on human subjects, neglecting the pivotal role of animal models in pre-clinical drug development. In this work, we focus on optimizing lung tumor segmentation in mice. First, we demonstrate that the nnU-Net model outperforms the U-Net, U-Net3+, and DeepMeta models. Most importantly, we achieve better results with nnU-Net 3D models than 2D models, indicating the importance of spatial context for segmentation tasks in MRI mice scans. This study demonstrates the importance of 3D input over 2D input images for lung tumor segmentation in MRI scans. Finally, we outperform the prior state-of-the-art approach that involves the combined segmentation of lungs and tumors within the lungs. Our work achieves comparable results using only lung tumor annotations requiring fewer annotations, saving time and annotation efforts. This work (https://anonymous.4open.science/r/lung-tumour-mice-mri-64BB) is an important step in automating pre-clinical animal studies to quantify the efficacy of experimental drugs, particularly in assessing tumor changes.

The rapid development of modern artificial intelligence (AI) systems has created an urgent need for their scientific quantification. While their fluency across a variety of domains is impressive, modern AI systems fall short on tests requiring symbolic processing and abstraction - a glaring limitation given the necessity for interpretable and reliable technology. Despite a surge of reasoning benchmarks emerging from the academic community, no comprehensive and theoretically-motivated framework exists to quantify reasoning (and more generally, symbolic ability) in AI systems. Here, we adopt a framework from computational complexity theory to explicitly quantify symbolic generalization: algebraic circuit complexity. Many symbolic reasoning problems can be recast as algebraic expressions. Thus, algebraic circuit complexity theory - the study of algebraic expressions as circuit models (i.e., directed acyclic graphs) - is a natural framework to study the complexity of symbolic computation. The tools of algebraic circuit complexity enable the study of generalization by defining benchmarks in terms of their complexity-theoretic properties (i.e., the difficulty of a problem). Moreover, algebraic circuits are generic mathematical objects; for a given algebraic circuit, an arbitrarily large number of samples can be generated for a specific circuit, making it an optimal testbed for the data-hungry machine learning algorithms that are used today. Here, we adopt tools from algebraic circuit complexity theory, apply it to formalize a science of symbolic generalization, and address key theoretical and empirical challenges for its successful application to AI science and its impact on the broader community.

Graph Neural Networks (GNNs), which are nowadays the benchmark approach in graph representation learning, have been shown to be vulnerable to adversarial attacks, raising concerns about their real-world applicability. While existing defense techniques primarily concentrate on the training phase of GNNs, involving adjustments to message passing architectures or pre-processing methods, there is a noticeable gap in methods focusing on increasing robustness during inference. In this context, this study introduces RobustCRF, a post-hoc approach aiming to enhance the robustness of GNNs at the inference stage. Our proposed method, founded on statistical relational learning using a Conditional Random Field, is model-agnostic and does not require prior knowledge about the underlying model architecture. We validate the efficacy of this approach across various models, leveraging benchmark node classification datasets.

Deep learning has led to remarkable advancements in computational histopathology, e.g., in diagnostics, biomarker prediction, and outcome prognosis. Yet, the lack of annotated data and the impact of batch effects, e.g., systematic technical data differences across hospitals, hamper model robustness and generalization. Recent histopathological foundation models -- pretrained on millions to billions of images -- have been reported to improve generalization performances on various downstream tasks. However, it has not been systematically assessed whether they fully eliminate batch effects. In this study, we empirically show that the feature embeddings of the foundation models still contain distinct hospital signatures that can lead to biased predictions and misclassifications. We further find that the signatures are not removed by stain normalization methods, dominate distances in feature space, and are evident across various principal components. Our work provides a novel perspective on the evaluation of medical foundation models, paving the way for more robust pretraining strategies and downstream predictors.