Accurate imputation of missing laboratory values in electronic health records (EHRs) is critical to enable robust clinical predictions and reduce biases in AI systems in healthcare. Existing methods, such as variational autoencoders (VAEs) and decision tree-based approaches such as XGBoost, struggle to model the complex temporal and contextual dependencies in EHR data, mainly in underrepresented groups. In this work, we propose Lab-MAE, a novel transformer-based masked autoencoder framework that leverages self-supervised learning for the imputation of continuous sequential lab values. Lab-MAE introduces a structured encoding scheme that jointly models laboratory test values and their corresponding timestamps, enabling explicit capturing temporal dependencies. Empirical evaluation on the MIMIC-IV dataset demonstrates that Lab-MAE significantly outperforms the state-of-the-art baselines such as XGBoost across multiple metrics, including root mean square error (RMSE), R-squared (R2), and Wasserstein distance (WD). Notably, Lab-MAE achieves equitable performance across demographic groups of patients, advancing fairness in clinical predictions. We further investigate the role of follow-up laboratory values as potential shortcut features, revealing Lab-MAE's robustness in scenarios where such data is unavailable. The findings suggest that our transformer-based architecture, adapted to the characteristics of the EHR data, offers a foundation model for more accurate and fair clinical imputation models. In addition, we measure and compare the carbon footprint of Lab-MAE with the baseline XGBoost model, highlighting its environmental requirements.

Developing a reinforcement learning (RL) agent often involves identifying values for numerous parameters, covering the policy, reward function, environment, and agent-internal architecture. Since these parameters are interrelated in complex ways, optimizing them is a black-box problem that proves especially challenging for nonexperts. Although existing optimization-as-a-service platforms (e.g., Vizier and Optuna) can handle such problems, they are impractical for RL systems, since the need for manual user mapping of each parameter to distinct components makes the effort cumbersome. It also requires understanding of the optimization process, limiting the systems' application beyond the machine learning field and restricting access in areas such as cognitive science, which models human decision-making. To tackle these challenges, the paper presents AgentForge, a flexible low-code platform to optimize any parameter set across an RL system. Available at https://github.com/feferna/AgentForge, it allows an optimization problem to be defined in a few lines of code and handed to any of the interfaced optimizers. With AgentForge, the user can optimize the parameters either individually or jointly. The paper presents an evaluation of its performance for a challenging vision-based RL problem.

Multiple supervised learning scenarios are composed by a sequence of classification tasks. For instance, multi-task learning and continual learning aim to learn a sequence of tasks that is either fixed or grows over time. Existing techniques for learning tasks that are in a sequence are tailored to specific scenarios, lacking adaptability to others. In addition, most of existing techniques consider situations in which the order of the tasks in the sequence is not relevant. However, it is common that tasks in a sequence are evolving in the sense that consecutive tasks often have a higher similarity. This paper presents a learning methodology that is applicable to multiple supervised learning scenarios and adapts to evolving tasks. Differently from existing techniques, we provide computable tight performance guarantees and analytically characterize the increase in the effective sample size. Experiments on benchmark datasets show the performance improvement of the proposed methodology in multiple scenarios and the reliability of the presented performance guarantees.

Retrieval-augmented generation (RAG) is a powerful technique that enhances downstream task execution by retrieving additional information, such as knowledge, skills, and tools from external sources. Graph, by its intrinsic "nodes connected by edges" nature, encodes massive heterogeneous and relational information, making it a golden resource for RAG in tremendous real-world applications. As a result, we have recently witnessed increasing attention on equipping RAG with Graph, i.e., GraphRAG. However, unlike conventional RAG, where the retriever, generator, and external data sources can be uniformly designed in the neural-embedding space, the uniqueness of graph-structured data, such as diverse-formatted and domain-specific relational knowledge, poses unique and significant challenges when designing GraphRAG for different domains. Given the broad applicability, the associated design challenges, and the recent surge in GraphRAG, a systematic and up-to-date survey of its key concepts and techniques is urgently desired. Following this motivation, we present a comprehensive and up-to-date survey on GraphRAG. Our survey first proposes a holistic GraphRAG framework by defining its key components, including query processor, retriever, organizer, generator, and data source. Furthermore, recognizing that graphs in different domains exhibit distinct relational patterns and require dedicated designs, we review GraphRAG techniques uniquely tailored to each domain. Finally, we discuss research challenges and brainstorm directions to inspire cross-disciplinary opportunities.

Privacy concerns arise as sensitive data proliferate. Despite decentralized federated learning (DFL) aggregating gradients from neighbors to avoid direct data transmission, it still poses indirect data leaks from the transmitted gradients. Existing privacy-preserving methods for DFL add noise to gradients. They either diminish the model predictive accuracy or suffer from ineffective gradient protection. In this paper, we propose a novel lossless privacy-preserving aggregation rule named LPPA to enhance gradient protection as much as possible but without loss of DFL model predictive accuracy. LPPA subtly injects the noise difference between the sent and received noise into transmitted gradients for gradient protection. The noise difference incorporates neighbors' randomness for each client, effectively safeguarding against data leaks. LPPA employs the noise flow conservation theory to ensure that the noise impact can be globally eliminated. The global sum of all noise differences remains zero, ensuring that accurate gradient aggregation is unaffected and the model accuracy remains intact. We theoretically prove that the privacy-preserving capacity of LPPA is \sqrt{2} times greater than that of noise addition, while maintaining comparable model accuracy to the standard DFL aggregation without noise injection. Experimental results verify the theoretical findings and show that LPPA achieves a 13% mean improvement in accuracy over noise addition. We also demonstrate the effectiveness of LPPA in protecting raw data and guaranteeing lossless model accuracy.

Video-based vehicle detection and counting play a critical role in managing transport infrastructure. Traditional image-based counting methods usually involve two main steps: initial detection and subsequent tracking, which are applied to all video frames, leading to a significant increase in computational complexity. To address this issue, this work presents an alternative and more efficient method for vehicle detection and counting. The proposed approach eliminates the need for a tracking step and focuses solely on detecting vehicles in key video frames, thereby increasing its efficiency. To achieve this, we developed a system that combines YOLO, for vehicle detection, with Visual Rhythm, a way to create time-spatial images that allows us to focus on frames that contain useful information. Additionally, this method can be used for counting in any application involving unidirectional moving targets to be detected and identified. Experimental analysis using real videos shows that the proposed method achieves mean counting accuracy around 99.15% over a set of videos, with a processing speed three times faster than tracking based approaches.

Congenital heart disease is among the most common fetal abnormalities and birth defects. Despite identifying numerous risk factors influencing its onset, a comprehensive understanding of its genesis and management across diverse populations remains limited. Recent advancements in machine learning have demonstrated the potential for leveraging patient data to enable early congenital heart disease detection. Over the past seven years, researchers have proposed various data-driven and algorithmic solutions to address this challenge. This paper presents a systematic review of congential heart disease recognition using machine learning, conducting a meta-analysis of 432 references from leading journals published between 2018 and 2024. A detailed investigation of 74 scholarly works highlights key factors, including databases, algorithms, applications, and solutions. Additionally, the survey outlines reported datasets used by machine learning experts for congenital heart disease recognition. Using a systematic literature review methodology, this study identifies critical challenges and opportunities in applying machine learning to congenital heart disease.

This paper introduces foundational resources and models for natural language processing (NLP) of historical Turkish, a domain that has remained underexplored in computational linguistics. We present the first named entity recognition (NER) dataset, HisTR and the first Universal Dependencies treebank, OTA-BOUN for a historical form of the Turkish language along with transformer-based models trained using these datasets for named entity recognition, dependency parsing, and part-of-speech tagging tasks. Additionally, we introduce Ottoman Text Corpus (OTC), a clean corpus of transliterated historical Turkish texts that spans a wide range of historical periods. Our experimental results show significant improvements in the computational analysis of historical Turkish, achieving promising results in tasks that require understanding of historical linguistic structures. They also highlight existing challenges, such as domain adaptation and language variations across time periods. All of the presented resources and models are made available at https://huggingface.co/bucolin to serve as a benchmark for future progress in historical Turkish NLP.

Chart interpretation is crucial for visual data analysis, but accurately extracting information from charts poses significant challenges for automated models. This study investigates the fine-tuning of DEPLOT, a modality conversion module that translates the image of a plot or chart to a linearized table, on a custom dataset of 50,000 bar charts. The dataset comprises simple, stacked, and grouped bar charts, targeting the unique structural features of these visualizations. The finetuned DEPLOT model is evaluated against its base version using a test set of 1,000 images and two metrics: Relative Mapping Similarity (RMS), which measures categorical mapping accuracy, and Relative Number Set Similarity (RNSS), which evaluates numerical interpretation accuracy. To further explore the reasoning capabilities of large language models (LLMs), we curate an additional set of 100 bar chart images paired with question answer sets. Our findings demonstrate that providing a structured intermediate table alongside the image significantly enhances LLM reasoning performance compared to direct image queries.

The rapid evolution of deep learning has significantly transformed Automatic Speech Recognition (ASR), shifting from traditional systems such as Hidden Markov Models (HMMs) and Gaussian Mixture Models (GMMs) to advanced end-to-end neural architectures. While innovations such as Connectionist Temporal Classification (CTC) and attentionbased encoder-decoder models have established new baselines [1], transformer-based models like OpenAI's Whisper have further pushed the boundaries, setting state-of-the-art benchmarks for multilingual, multitask ASR systems [2]. Despite their successes, transformer architectures face inherent challenges in scaling to long sequences, particularly those encountered in extended audio recordings.