The CMS detector is a general-purpose apparatus that detects high-energy collisions produced at the LHC. Online Data Quality Monitoring of the CMS electromagnetic calorimeter is a vital operational tool that allows detector experts to quickly identify, localize, and diagnose a broad range of detector issues that could affect the quality of physics data. A real-time autoencoder-based anomaly detection system using semi-supervised machine learning is presented enabling the detection of anomalies in the CMS electromagnetic calorimeter data. A novel method is introduced which maximizes the anomaly detection performance by exploiting the time-dependent evolution of anomalies as well as spatial variations in the detector response. The autoencoder-based system is able to efficiently detect anomalies, while maintaining a very low false discovery rate. The performance of the system is validated with anomalies found in 2018 and 2022 LHC collision data. Additionally, the first results from deploying the autoencoder-based system in the CMS online Data Quality Monitoring workflow during the beginning of Run 3 of the LHC are presented, showing its ability to detect issues missed by the existing system.

Medical image registration is a critical task that estimates the spatial correspondence between pairs of images. However, current traditional and deep-learning-based methods rely on similarity measures to generate a deforming field, which often results in disproportionate volume changes in dissimilar regions, especially in tumor regions. These changes can significantly alter the tumor size and underlying anatomy, which limits the practical use of image registration in clinical diagnosis. To address this issue, we have formulated image registration with tumors as a constraint problem that preserves tumor volumes while maximizing image similarity in other normal regions. Our proposed strategy involves a two-stage process. In the first stage, we use similarity-based registration to identify potential tumor regions by their volume change, generating a soft tumor mask accordingly. In the second stage, we propose a volume-preserving registration with a novel adaptive volume-preserving loss that penalizes the change in size adaptively based on the masks calculated from the previous stage. Our approach balances image similarity and volume preservation in different regions, i.e., normal and tumor regions, by using soft tumor masks to adjust the imposition of volume-preserving loss on each one. This ensures that the tumor volume is preserved during the registration process. We have evaluated our strategy on various datasets and network architectures, demonstrating that our method successfully preserves the tumor volume while achieving comparable registration results with state-of-the-art methods. Our codes is available at: \url{https://dddraxxx.github.io/Volume-Preserving-Registration/}.

Causality and eXplainable Artificial Intelligence (XAI) have developed as separate fields in computer science, even though the underlying concepts of causation and explanation share common ancient roots. This is further enforced by the lack of review works jointly covering these two fields. In this paper, we investigate the literature to try to understand how and to what extent causality and XAI are intertwined. More precisely, we seek to uncover what kinds of relationships exist between the two concepts and how one can benefit from them, for instance, in building trust in AI systems. As a result, three main perspectives are identified. In the first one, the lack of causality is seen as one of the major limitations of current AI and XAI approaches, and the "optimal" form of explanations is investigated. The second is a pragmatic perspective and considers XAI as a tool to foster scientific exploration for causal inquiry, via the identification of pursue-worthy experimental manipulations. Finally, the third perspective supports the idea that causality is propaedeutic to XAI in three possible manners: exploiting concepts borrowed from causality to support or improve XAI, utilizing counterfactuals for explainability, and considering accessing a causal model as explaining itself. To complement our analysis, we also provide relevant software solutions used to automate causal tasks. We believe our work provides a unified view of the two fields of causality and XAI by highlighting potential domain bridges and uncovering possible limitations.

Large language models (LLMs) have the potential to transform our lives and work through the content they generate, known as AI-Generated Content (AIGC). To harness this transformation, we need to understand the limitations of LLMs. Here, we investigate the bias of AIGC produced by seven representative LLMs, including ChatGPT and LLaMA. We collect news articles from The New York Times and Reuters, both known for their dedication to provide unbiased news. We then apply each examined LLM to generate news content with headlines of these news articles as prompts, and evaluate the gender and racial biases of the AIGC produced by the LLM by comparing the AIGC and the original news articles. We further analyze the gender bias of each LLM under biased prompts by adding gender-biased messages to prompts constructed from these news headlines. Our study reveals that the AIGC produced by each examined LLM demonstrates substantial gender and racial biases. Moreover, the AIGC generated by each LLM exhibits notable discrimination against females and individuals of the Black race. Among the LLMs, the AIGC generated by ChatGPT demonstrates the lowest level of bias, and ChatGPT is the sole model capable of declining content generation when provided with biased prompts.

We explore how continued pre-training on domain-specific corpora influences large language models, revealing that training on the raw corpora endows the model with domain knowledge, but drastically hurts its prompting ability for question answering. Taken inspiration from human learning via reading comprehension--practice after reading improves the ability to answer questions based on the learned knowledge--we propose a simple method for transforming raw corpora into reading comprehension texts. Each raw text is enriched with a series of tasks related to its content. Our method, highly scalable and applicable to any pre-training corpora, consistently enhances performance across various tasks in three different domains: biomedicine, finance, and law. Notably, our 7B language model achieves competitive performance with domain-specific models of much larger scales, such as BloombergGPT-50B. Furthermore, we demonstrate that domain-specific reading comprehension texts can improve the model's performance even on general benchmarks, showing the potential to develop a general model across even more domains. Our model, code, and data will be available at https://github.com/microsoft/LMOps.

End-to-end models, such as the neural Transducer, have been successful in integrating acoustic and linguistic information jointly to achieve excellent recognition performance. However, adapting these models with text-only data is challenging. Factorized neural Transducer (FNT) aims to address this issue by introducing a separate vocabulary decoder to predict the vocabulary, which can effectively perform traditional text data adaptation. Nonetheless, this approach has limitations in fusing acoustic and language information seamlessly. Moreover, a degradation in word error rate (WER) on the general test sets was also observed, leading to doubts about its overall performance. In response to this challenge, we present an improved factorized neural Transducer (IFNT) model structure designed to comprehensively integrate acoustic and language information while enabling effective text adaptation. We evaluate the performance of our proposed methods through in-domain experiments on GigaSpeech and out-of-domain experiments adapting to EuroParl, TED-LIUM, and Medical datasets. After text-only adaptation, IFNT yields 7.9% to 28.5% relative WER improvements over the standard neural Transducer with shallow fusion, and relative WER reductions ranging from 1.6% to 8.2% on the three test sets compared to the FNT model.

Aims. The purpose of this study is to create a multi-stage machine learning model to predict cardiac resynchronization therapy (CRT) response for heart failure (HF) patients. This model exploits uncertainty quantification to recommend additional collection of single-photon emission computed tomography myocardial perfusion imaging (SPECT MPI) variables if baseline clinical variables and features from electrocardiogram (ECG) are not sufficient. Methods. 218 patients who underwent rest-gated SPECT MPI were enrolled in this study. CRT response was defined as an increase in left ventricular ejection fraction (LVEF) > 5% at a 6 month follow-up. A multi-stage ML model was created by combining two ensemble models. Results. The response rate for CRT was 55.5% (n = 121) with overall male gender 61.0% (n = 133), an average age of 62.0, and LVEF of 27.7. The multi-stage model performed similarly to Ensemble 2 (which utilized the additional SPECT data) with AUC of 0.75 vs. 0.77, accuracy of 0.71 vs. 0.69, sensitivity of 0.70 vs. 0.72, and specificity 0.72 vs. 0.65, respectively. However, the multi-stage model only required SPECT MPI data for 52.7% of the patients across all folds. Conclusions. By using rule-based logic stemming from uncertainty quantification, the multi-stage model was able to reduce the need for additional SPECT MPI data acquisition without sacrificing performance.

Transformers have significantly advanced the field of natural language processing, but comprehending their internal mechanisms remains a challenge. In this paper, we introduce a novel geometric perspective that elucidates the inner mechanisms of transformer operations. Our primary contribution is illustrating how layer normalization confines the latent features to a hyper-sphere, subsequently enabling attention to mold the semantic representation of words on this surface. This geometric viewpoint seamlessly connects established properties such as iterative refinement and contextual embeddings. We validate our insights by probing a pre-trained 124M parameter GPT-2 model. Our findings reveal clear query-key attention patterns in early layers and build upon prior observations regarding the subject-specific nature of attention heads at deeper layers. Harnessing these geometric insights, we present an intuitive understanding of transformers, depicting them as processes that model the trajectory of word particles along the hyper-sphere.

News recommender systems play an increasingly influential role in shaping information access within democratic societies. However, tailoring recommendations to users' specific interests can result in the divergence of information streams. Fragmented access to information poses challenges to the integrity of the public sphere, thereby influencing democracy and public discourse. The Fragmentation metric quantifies the degree of fragmentation of information streams in news recommendations. Accurate measurement of this metric requires the application of Natural Language Processing (NLP) to identify distinct news events, stories, or timelines. This paper presents an extensive investigation of various approaches for quantifying Fragmentation in news recommendations. These approaches are evaluated both intrinsically, by measuring performance on news story clustering, and extrinsically, by assessing the Fragmentation scores of different simulated news recommender scenarios. Our findings demonstrate that agglomerative hierarchical clustering coupled with SentenceBERT text representation is substantially better at detecting Fragmentation than earlier implementations. Additionally, the analysis of simulated scenarios yields valuable insights and recommendations for stakeholders concerning the measurement and interpretation of Fragmentation.

Pre-trained language models(PLM) have made impressive results in various NLP tasks. It has been revealed that one of the key factors to their success is the parameters of these models implicitly learn all kinds of knowledge during pre-training. However, encoding knowledge implicitly in the model parameters has two fundamental drawbacks. First, the knowledge is neither editable nor scalable once the model is trained, which is especially problematic in that knowledge is consistently evolving. Second, it lacks interpretability and prevents humans from understanding which knowledge PLM requires for a certain problem. In this paper, we introduce PlugLM, a pre-training model with differentiable plug-in memory(DPM). The key intuition is to decouple the knowledge storage from model parameters with an editable and scalable key-value memory and leverage knowledge in an explainable manner by knowledge retrieval in the DPM. To justify this design choice, we conduct evaluations in three settings including: (1) domain adaptation. PlugLM obtains 3.95 F1 improvements across four domains on average without any in-domain pre-training. (2) knowledge update. PlugLM could absorb new knowledge in a training-free way after pre-training is done. (3) in-task knowledge learning. PlugLM could be further improved by incorporating training samples into DPM with knowledge prompting.