The growing trends in automation, Internet of Things, big data and cloud computing technologies have led to the fourth industrial revolution (Industry 4.0), where it is possible to visualize and identify patterns and insights, which results in a better understanding of the data and can improve the manufacturing process. However, many times, the task of data exploration results difficult for manufacturing experts because they might be interested in analyzing also data that does not appear in pre-designed visualizations and therefore they must be assisted by Information Technology experts. In this paper, we present a proposal materialized in a semantic-based visual query system developed for a real Industry 4.0 scenario that allows domain experts to explore and visualize data in a friendly way. The main novelty of the system is the combined use that it makes of captured data that are semantically annotated first, and a 2D customized digital representation of a machine that is also linked with semantic descriptions. Those descriptions are expressed using terms of an ontology, where, among others, the sensors that are used to capture indicators about the performance of a machine that belongs to a Industry 4.0 scenario have been modeled. Moreover, this semantic description allows to: formulate queries at a higher level of abstraction, provide customized graphical visualizations of the results based on the format and nature of the data, and download enriched data enabling further types of analysis.

Yes/No or polar questions represent one of the main linguistic question categories. They consist of a main interrogative clause, for which the answer is binary (assertion or negation). Polar questions and answers (PQA) represent a valuable knowledge resource present in many community and other curated QA sources, such as forums or e-commerce applications. Using answers to polar questions alone in other contexts is not trivial. Answers are contextualized, and presume that the interrogative question clause and any shared knowledge between the asker and answerer are provided. We address the problem of controllable rewriting of answers to polar questions into decontextualized and succinct factual statements. We propose a Transformer sequence to sequence model that utilizes soft-constraints to ensure controllable rewriting, such that the output statement is semantically equivalent to its PQA input. Evaluation on three separate PQA datasets as measured through automated and human evaluation metrics show that our proposed approach achieves the best performance when compared to existing baselines.

Word sense disambiguation primarily addresses the lexical ambiguity of common words based on a predefined sense inventory. Conversely, proper names are usually considered to denote an ad-hoc real-world referent. Once the reference is decided, the ambiguity is purportedly resolved. However, proper names also exhibit ambiguities through appellativization, i.e., they act like common words and may denote different aspects of their referents. We proposed to address the ambiguities of proper names through the light of regular polysemy, which we formalized as dot objects. This paper introduces a combined word sense disambiguation (WSD) model for disambiguating common words against Chinese Wordnet (CWN) and proper names as dot objects. The model leverages the flexibility of a gloss-based model architecture, which takes advantage of the glosses and example sentences of CWN. We show that the model achieves competitive results on both common and proper nouns, even on a relatively sparse sense dataset. Aside from being a performant WSD tool, the model further facilitates the future development of the lexical resource.

In the field of scientific computing, many problem-solving approaches tend to focus only on the process and final outcome, even in AI for science, there is a lack of deep multimodal information mining behind the data, missing a multimodal framework akin to that in the image-text domain. In this paper, we take Symbolic Regression(SR) as our focal point and, drawing inspiration from the BLIP model in the image-text domain, propose a scientific computing multimodal framework based on Function Images (Funcimg) and Operation Tree Sequence (OTS), named Bootstrapping OTS-Funcimg Pre-training Model (Botfip). In SR experiments, we validate the advantages of Botfip in low-complexity SR problems, showcasing its potential. As a MED framework, Botfip holds promise for future applications in a broader range of scientific computing problems.

The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to affect the risk, severity, and clinical outcome of serious neuro-vascular diseases. However, characterizing the highly variable CoW anatomy is still a manual and time-consuming expert task. The CoW is usually imaged by two angiographic imaging modalities, magnetic resonance angiography (MRA) and computed tomography angiography (CTA), but there exist limited public datasets with annotations on CoW anatomy, especially for CTA. Therefore we organized the TopCoW Challenge in 2023 with the release of an annotated CoW dataset. The TopCoW dataset was the first public dataset with voxel-level annotations for thirteen possible CoW vessel components, enabled by virtual-reality (VR) technology. It was also the first large dataset with paired MRA and CTA from the same patients. TopCoW challenge formalized the CoW characterization problem as a multiclass anatomical segmentation task with an emphasis on topological metrics. We invited submissions worldwide for the CoW segmentation task, which attracted over 140 registered participants from four continents. The top performing teams managed to segment many CoW components to Dice scores around 90%, but with lower scores for communicating arteries and rare variants. There were also topological mistakes for predictions with high Dice scores. Additional topological analysis revealed further areas for improvement in detecting certain CoW components and matching CoW variant topology accurately. TopCoW represented a first attempt at benchmarking the CoW anatomical segmentation task for MRA and CTA, both morphologically and topologically.

Federated learning (FL) has emerged as a promising paradigm for training segmentation models on decentralized medical data, owing to its privacy-preserving property. However, existing research overlooks the prevalent annotation noise encountered in real-world medical datasets, which limits the performance ceilings of FL. In this paper, we, for the first time, identify and tackle this problem. For problem formulation, we propose a contour evolution for modeling non-independent and identically distributed (Non-IID) noise across pixels within each client and then extend it to the case of multi-source data to form a heterogeneous noise model (i.e., Non-IID annotation noise across clients). For robust learning from annotations with such two-level Non-IID noise, we emphasize the importance of data quality in model aggregation, allowing high-quality clients to have a greater impact on FL. To achieve this, we propose Federated learning with Annotation quAlity-aware AggregatIon, named FedA3I, by introducing a quality factor based on client-wise noise estimation. Specifically, noise estimation at each client is accomplished through the Gaussian mixture model and then incorporated into model aggregation in a layer-wise manner to up-weight high-quality clients. Extensive experiments on two real-world medical image segmentation datasets demonstrate the superior performance of FedA$^3$I against the state-of-the-art approaches in dealing with cross-client annotation noise. The code is available at https://github.com/wnn2000/FedAAAI.

Foundation models (FMs) learn from large volumes of unlabeled data to demonstrate superior performance across a wide range of tasks. However, FMs developed for biomedical domains have largely remained unimodal, i.e., independently trained and used for tasks on protein sequences alone, small molecule structures alone, or clinical data alone. To overcome this limitation, we present BioBRIDGE, a parameter-efficient learning framework, to bridge independently trained unimodal FMs to establish multimodal behavior. BioBRIDGE achieves it by utilizing Knowledge Graphs (KG) to learn transformations between one unimodal FM and another without fine-tuning any underlying unimodal FMs. Our results demonstrate that BioBRIDGE can beat the best baseline KG embedding methods (on average by 76.3%) in cross-modal retrieval tasks. We also identify BioBRIDGE demonstrates out-of-domain generalization ability by extrapolating to unseen modalities or relations. Additionally, we also show that BioBRIDGE presents itself as a general-purpose retriever that can aid biomedical multimodal question answering as well as enhance the guided generation of novel drugs. Foundation models (Bommasani et al., 2021) trained on large volumes of data can be leveraged and adapted for different domains. In biomedicine, FMs are trained to ingest text corpora (Gu et al., 2021) from scientific literature, protein data in sequences and 3D-structures (Jumper et al., 2021), molecule in graphs and SMILES strings (Fabian et al., 2020) and protein-interaction data in the form of relational graphs. These pre-trained biomedical FMs have achieved a significant gain in comparison to previous methods trained on smaller datasets (Qiu et al., 2023). Introducing multimodal data in training further boosts the performance of FMs, especially in few-shot/zero-shot prediction settings (Radford et al., 2021). In the biomedical domain, for drug-text (Edwards et al., 2022), protein-text (Liu et al., 2023), and drug-protein data (Huang et al., 2021; Ioannidis et al., 2020), multimodal data was leveraged by the joint optimization of unimodal encoders. However, this idea encounters key issues when scaling beyond two modalities: Computational Cost.

Compositional generalization is a key ability of humans that enables us to learn new concepts from only a handful examples. Neural machine learning models, including the now ubiquitous Transformers, struggle to generalize in this way, and typically require thousands of examples of a concept during training in order to generalize meaningfully. This difference in ability between humans and artificial neural architectures, motivates this study on a neuro-symbolic architecture called the Compositional Program Generator (CPG). CPG has three key features: \textit{modularity}, \textit{composition}, and \textit{abstraction}, in the form of grammar rules, that enable it to generalize both systematically to new concepts in a few-shot manner, as well as productively by length on various sequence-to-sequence language tasks. For each input, CPG uses a grammar of the input language and a parser to generate a parse in which each grammar rule is assigned its own unique semantic module, a probabilistic copy or substitution program. Instances with the same parse are always processed with the same composed modules, while those with different parses may be processed with different modules. CPG learns parameters for the modules and is able to learn the semantics for new rules and types incrementally, without forgetting or retraining on rules it's already seen. It achieves perfect generalization on both the SCAN and COGS benchmarks using just 14 examples for SCAN and 22 examples for COGS -- state-of-the-art accuracy with a 1000x improvement in sample efficiency.

Music streaming services heavily rely on their recommendation engines to continuously provide content to their consumers. Sequential recommendation consequently has seen considerable attention in current literature, where state of the art approaches focus on self-attentive models leveraging contextual information such as long and short-term user history and item features; however, most of these studies focus on long-form content domains (retail, movie, etc.) rather than short-form, such as music. Additionally, many do not explore incorporating negative session-level feedback during training. In this study, we investigate the use of transformer-based self-attentive architectures to learn implicit session-level information for sequential music recommendation. We additionally propose a contrastive learning task to incorporate negative feedback (e.g skipped tracks) to promote positive hits and penalize negative hits. This task is formulated as a simple loss term that can be incorporated into a variety of deep learning architectures for sequential recommendation. Our experiments show that this results in consistent performance gains over the baseline architectures ignoring negative user feedback.

Although diffusion models (DMs) have shown promising performances in a number of tasks (e.g., speech synthesis and image generation), they might suffer from error propagation because of their sequential structure. However, this is not certain because some sequential models, such as Conditional Random Field (CRF), are free from this problem. To address this issue, we develop a theoretical framework to mathematically formulate error propagation in the architecture of DMs, The framework contains three elements, including modular error, cumulative error, and propagation equation. The modular and cumulative errors are related by the equation, which interprets that DMs are indeed affected by error propagation. Our theoretical study also suggests that the cumulative error is closely related to the generation quality of DMs. Based on this finding, we apply the cumulative error as a regularization term to reduce error propagation. Because the term is computationally intractable, we derive its upper bound and design a bootstrap algorithm to efficiently estimate the bound for optimization. We have conducted extensive experiments on multiple image datasets, showing that our proposed regularization reduces error propagation, significantly improves vanilla DMs, and outperforms previous baselines.