Oceania
Latent Relationship Mining of Glaucoma Biomarkers: a TRI-LSTM based Deep Learning
Huang, Cheng, Shen, Junhao, Luo, Qiuyu, Kooner, Karanjit, Lee, Tsengdar, Liu, Yishen, Zhang, Jia
In recently years, a significant amount of research has been conducted on applying deep learning methods for glaucoma classification and detection. However, the explainability of those established machine learning models remains a big concern. In this research, in contrast, we learn from cognitive science concept and study how ophthalmologists judge glaucoma detection. Simulating experts' efforts, we propose a hierarchical decision making system, centered around a holistic set of carefully designed biomarker-oriented machine learning models. While biomarkers represent the key indicators of how ophthalmologists identify glaucoma, they usually exhibit latent inter-relations. We thus construct a time series model, named TRI-LSTM, capable of calculating and uncovering potential and latent relationships among various biomarkers of glaucoma. Our model is among the first efforts to explore the intrinsic connections among glaucoma biomarkers. We monitor temporal relationships in patients' disease states over time and to capture and retain the progression of disease-relevant clinical information from prior visits, thereby enriching biomarker's potential relationships. Extensive experiments over real-world dataset have demonstrated the effectiveness of the proposed model.
Hierarchical Blockmodelling for Knowledge Graphs
Pietrasik, Marcin, Reformat, Marek, Wilbik, Anna
In this paper, we investigate the use of probabilistic graphical models, specifically stochastic blockmodels, for the purpose of hierarchical entity clustering on knowledge graphs. These models, seldom used in the Semantic Web community, decompose a graph into a set of probability distributions. The parameters of these distributions are then inferred allowing for their subsequent sampling to generate a random graph. In a non-parametric setting, this allows for the induction of hierarchical clusterings without prior constraints on the hierarchy's structure. Specifically, this is achieved by the integration of the Nested Chinese Restaurant Process and the Stick Breaking Process into the generative model. In this regard, we propose a model leveraging such integration and derive a collapsed Gibbs sampling scheme for its inference. To aid in understanding, we describe the steps in this derivation and provide an implementation for the sampler. We evaluate our model on synthetic and real-world datasets and quantitatively compare against benchmark models. We further evaluate our results qualitatively and find that our model is capable of inducing coherent cluster hierarchies in small scale settings. The work presented in this paper provides the first step for the further application of stochastic blockmodels for knowledge graphs on a larger scale. We conclude the paper with potential avenues for future work on more scalable inference schemes.
Unlocking Global Optimality in Bilevel Optimization: A Pilot Study
Bilevel optimization has witnessed a resurgence of interest, driven by its critical role in trustworthy and efficient machine learning applications. Recent research has focused on proposing efficient methods with provable convergence guarantees. However, while many prior works have established convergence to stationary points or local minima, obtaining the global optimum of bilevel optimization remains an important yet open problem. The difficulty lies in the fact that unlike many prior non-convex single-level problems, this bilevel problem does not admit a ``benign" landscape, and may indeed have multiple spurious local solutions. Nevertheless, attaining the global optimality is indispensable for ensuring reliability, safety, and cost-effectiveness, particularly in high-stakes engineering applications that rely on bilevel optimization. In this paper, we first explore the challenges of establishing a global convergence theory for bilevel optimization, and present two sufficient conditions for global convergence. We provide algorithm-specific proofs to rigorously substantiate these sufficient conditions along the optimization trajectory, focusing on two specific bilevel learning scenarios: representation learning and data hypercleaning (a.k.a. reweighting). Experiments corroborate the theoretical findings, demonstrating convergence to global minimum in both cases.
Simulating realistic short tandem repeat capillary electrophoretic signal using a generative adversarial network
Taylor, Duncan, Humphries, Melissa
DNA profiles are made up from multiple series of electrophoretic signal measuring fluorescence over time. Typically, human DNA analysts 'read' DNA profiles using their experience to distinguish instrument noise, artefactual signal, and signal corresponding to DNA fragments of interest. Recent work has developed an artificial neural network, ANN, to carry out the task of classifying fluorescence types into categories in DNA profile electrophoretic signal. But the creation of the necessarily large amount of labelled training data for the ANN is time consuming and expensive, and a limiting factor in the ability to robustly train the ANN. If realistic, prelabelled, training data could be simulated then this would remove the barrier to training an ANN with high efficacy. Here we develop a generative adversarial network, GAN, modified from the pix2pix GAN to achieve this task. With 1078 DNA profiles we train the GAN and achieve the ability to simulate DNA profile information, and then use the generator from the GAN as a 'realism filter' that applies the noise and artefact elements exhibited in typical electrophoretic signal.
Short-Term Electricity-Load Forecasting by Deep Learning: A Comprehensive Survey
Dong, Qi, Huang, Rubing, Cui, Chenhui, Towey, Dave, Zhou, Ling, Tian, Jinyu, Wang, Jianzhou
Short-Term Electricity-Load Forecasting (STELF) refers to the prediction of the immediate demand (in the next few hours to several days) for the power system. Various external factors, such as weather changes and the emergence of new electricity consumption scenarios, can impact electricity demand, causing load data to fluctuate and become non-linear, which increases the complexity and difficulty of STELF. In the past decade, deep learning has been applied to STELF, modeling and predicting electricity demand with high accuracy, and contributing significantly to the development of STELF. This paper provides a comprehensive survey on deep-learning-based STELF over the past ten years. It examines the entire forecasting process, including data pre-processing, feature extraction, deep-learning modeling and optimization, and results evaluation. This paper also identifies some research challenges and potential research directions to be further investigated in future work.
Real-Time Energy Pricing in New Zealand: An Evolving Stream Analysis
Sun, Yibin, Gomes, Heitor Murilo, Pfahringer, Bernhard, Bifet, Albert
This paper introduces a group of novel datasets representing real-time time-series and streaming data of energy prices in New Zealand, sourced from the Electricity Market Information (EMI) website maintained by the New Zealand government. The datasets are intended to address the scarcity of proper datasets for streaming regression learning tasks. We conduct extensive analyses and experiments on these datasets, covering preprocessing techniques, regression tasks, prediction intervals, concept drift detection, and anomaly detection. Our experiments demonstrate the datasets' utility and highlight the challenges and opportunities for future research in energy price forecasting.
Evaluating Model Robustness Using Adaptive Sparse L0 Regularization
Liu, Weiyou, Li, Zhenyang, Chen, Weitong
Deep Neural Networks have demonstrated remarkable success in various domains but remain susceptible to adversarial examples, which are slightly altered inputs designed to induce misclassification. While adversarial attacks typically optimize under Lp norm constraints, attacks based on the L0 norm, prioritising input sparsity, are less studied due to their complex and non convex nature. These sparse adversarial examples challenge existing defenses by altering a minimal subset of features, potentially uncovering more subtle DNN weaknesses. However, the current L0 norm attack methodologies face a trade off between accuracy and efficiency either precise but computationally intense or expedient but imprecise. This paper proposes a novel, scalable, and effective approach to generate adversarial examples based on the L0 norm, aimed at refining the robustness evaluation of DNNs against such perturbations.
Structured Event Reasoning with Large Language Models
Reasoning about real-life events is a unifying challenge in AI and NLP that has profound utility in a variety of domains, while fallacy in high-stake applications could be catastrophic. Able to work with diverse text in these domains, large language models (LLMs) have proven capable of answering questions and solving problems. However, I show that end-to-end LLMs still systematically fail to reason about complex events, and they lack interpretability due to their black-box nature. To address these issues, I propose three general approaches to use LLMs in conjunction with a structured representation of events. The first is a language-based representation involving relations of sub-events that can be learned by LLMs via fine-tuning. The second is a semi-symbolic representation involving states of entities that can be predicted and leveraged by LLMs via few-shot prompting. The third is a fully symbolic representation that can be predicted by LLMs trained with structured data and be executed by symbolic solvers. On a suite of event reasoning tasks spanning common-sense inference and planning, I show that each approach greatly outperforms end-to-end LLMs with more interpretability. These results suggest manners of synergy between LLMs and structured representations for event reasoning and beyond.
ReXamine-Global: A Framework for Uncovering Inconsistencies in Radiology Report Generation Metrics
Banerjee, Oishi, Saenz, Agustina, Wu, Kay, Clements, Warren, Zia, Adil, Buensalido, Dominic, Kavnoudias, Helen, Abi-Ghanem, Alain S., Ghawi, Nour El, Luna, Cibele, Castillo, Patricia, Al-Surimi, Khaled, Daghistani, Rayyan A., Chen, Yuh-Min, Chao, Heng-sheng, Heiliger, Lars, Kim, Moon, Haubold, Johannes, Jonske, Frederic, Rajpurkar, Pranav
Given the rapidly expanding capabilities of generative AI models for radiology, there is a need for robust metrics that can accurately measure the quality of AI-generated radiology reports across diverse hospitals. We develop ReXamine-Global, a LLM-powered, multi-site framework that tests metrics across different writing styles and patient populations, exposing gaps in their generalization. First, our method tests whether a metric is undesirably sensitive to reporting style, providing different scores depending on whether AI-generated reports are stylistically similar to ground-truth reports or not. Second, our method measures whether a metric reliably agrees with experts, or whether metric and expert scores of AI-generated report quality diverge for some sites. Using 240 reports from 6 hospitals around the world, we apply ReXamine-Global to 7 established report evaluation metrics and uncover serious gaps in their generalizability. Developers can apply ReXamine-Global when designing new report evaluation metrics, ensuring their robustness across sites. Additionally, our analysis of existing metrics can guide users of those metrics towards evaluation procedures that work reliably at their sites of interest.
CoGen: Learning from Feedback with Coupled Comprehension and Generation
Gul, Mustafa Omer, Artzi, Yoav
Systems with both language comprehension and generation capabilities can benefit from the tight connection between the two. This work studies coupling comprehension and generation with focus on continually learning from interaction with users. We propose techniques to tightly integrate the two capabilities for both learning and inference. We situate our studies in two-player reference games, and deploy various models for thousands of interactions with human users, while learning from interaction feedback signals. We show dramatic improvements in performance over time, with comprehension-generation coupling leading to performance improvements up to 26% in absolute terms and up to 17% higher accuracies compared to a non-coupled system. Our analysis also shows coupling has substantial qualitative impact on the system's language, making it significantly more human-like.