Text classification methods have been widely investigated as a way to detect content of low credibility: fake news, social media bots, propaganda, etc. Quite accurate models (likely based on deep neural networks) help in moderating public electronic platforms and often cause content creators to face rejection of their submissions or removal of already published texts. Having the incentive to evade further detection, content creators try to come up with a slightly modified version of the text (known as an attack with an adversarial example) that exploit the weaknesses of classifiers and result in a different output. Here we systematically test the robustness of popular text classifiers against available attacking techniques and discover that, indeed, in some cases insignificant changes in input text can mislead the models. We also introduce BODEGA: a benchmark for testing both victim models and attack methods on four misinformation detection tasks in an evaluation framework designed to simulate real use-cases of content moderation. Finally, we manually analyse a subset adversarial examples and check what kinds of modifications are used in successful attacks. The BODEGA code and data is openly shared in hope of enhancing the comparability and replicability of further research in this area

Continual learning (CL) can help pre-trained vision-language models efficiently adapt to new or under-trained data distributions without re-training. Nevertheless, during the continual training of the Contrastive Language-Image Pre-training (CLIP) model, we observe that the model's zero-shot transfer ability significantly degrades due to catastrophic forgetting. Existing CL methods can mitigate forgetting by replaying previous data. However, since the CLIP dataset is private, replay methods cannot access the pre-training dataset. In addition, replaying data of previously learned downstream tasks can enhance their performance but comes at the cost of sacrificing zero-shot performance. To address this challenge, we propose a novel method ZSCL to prevent zero-shot transfer degradation in the continual learning of vision-language models in both feature and parameter space. In the feature space, a reference dataset is introduced for distillation between the current and initial models. The reference dataset should have semantic diversity but no need to be labeled, seen in pre-training, or matched image-text pairs. In parameter space, we prevent a large parameter shift by averaging weights during the training. We propose a more challenging Multi-domain Task Incremental Learning (MTIL) benchmark to evaluate different methods, where tasks are from various domains instead of class-separated in a single dataset. Our method outperforms other methods in the traditional class-incremental learning setting and the MTIL by 9.7% average score. Our code locates at https://github.com/Thunderbeee/ZSCL.

Convolutional neural networks (CNNs) are increasingly being used in critical systems, where robustness and alignment are crucial. In this context, the field of explainable artificial intelligence has proposed the generation of high-level explanations of the prediction process of CNNs through concept extraction. While these methods can detect whether or not a concept is present in an image, they are unable to determine its location. What is more, a fair comparison of such approaches is difficult due to a lack of proper validation procedures. To address these issues, we propose a novel method for automatic concept extraction and localization based on representations obtained through pixel-wise aggregations of CNN activation maps. Further, we introduce a process for the validation of concept-extraction techniques based on synthetic datasets with pixel-wise annotations of their main components, reducing the need for human intervention. Extensive experimentation on both synthetic and real-world datasets demonstrates that our method outperforms state-of-the-art alternatives.

In this work, we present Con$^{2}$DA, a simple framework that extends recent advances in semi-supervised learning to the semi-supervised domain adaptation (SSDA) problem. Our framework generates pairs of associated samples by performing stochastic data transformations to a given input. Associated data pairs are mapped to a feature representation space using a feature extractor. We use different loss functions to enforce consistency between the feature representations of associated data pairs of samples. We show that these learned representations are useful to deal with differences in data distributions in the domain adaptation problem. We performed experiments to study the main components of our model and we show that (i) learning of the consistent and contrastive feature representations is crucial to extract good discriminative features across different domains, and ii) our model benefits from the use of strong augmentation policies. With these findings, our method achieves state-of-the-art performances in three benchmark datasets for SSDA.

The performance of graph representation learning is affected by the quality of graph input. While existing research usually pursues a globally smoothed graph embedding, we believe the rarely observed anomalies are as well harmful to an accurate prediction. This work establishes a graph learning scheme that automatically detects (locally) corrupted feature attributes and recovers robust embedding for prediction tasks. The detection operation leverages a graph autoencoder, which does not make any assumptions about the distribution of the local corruptions. It pinpoints the positions of the anomalous node attributes in an unbiased mask matrix, where robust estimations are recovered with sparsity promoting regularizer. The optimizer approaches a new embedding that is sparse in the framelet domain and conditionally close to input observations. Extensive experiments are provided to validate our proposed model can recover a robust graph representation from black-box poisoning and achieve excellent performance.

Bogged down in small-scale infantry attacks and incremental advances, Ukraine sought to gain an advantage in the 76th week of the war by attacking Russian shipping at range and was accused of drone strikes targeting Moscow. Drone footage Ukraine released on August 4 showed the prow of a surface drone approaching the Olenegorsky Gornyak, a Ropucha-class Russian landing ship, before going blank at contact range. The attack happened just outside Novorossiysk harbour, supposedly a safe port on the eastern edge of the Black Sea, to which Russia had relocated much of its navy fleet based in Sevastopol after Ukraine sank its Black Sea flagship in May. Daylight footage showed the Olenegorsky Gornyak listing severely to port as it was towed to Novorossiysk harbour. "This poses a great dilemma for the Russians," wrote Phillips O'Brien, professor of strategy at St Andrews University.

Node classification is the task of predicting the labels of unlabeled nodes in a graph. State-of-the-art methods based on graph neural networks achieve excellent performance when all labels are available during training. But in real-life, models are often applied on data with new classes, which can lead to massive misclassification and thus significantly degrade performance. Hence, developing open-set classification methods is crucial to determine if a given sample belongs to a known class. Existing methods for open-set node classification generally use transductive learning with part or all of the features of real unseen class nodes to help with open-set classification. In this paper, we propose a novel generative open-set node classification method, i.e. $\mathcal{G}^2Pxy$, which follows a stricter inductive learning setting where no information about unknown classes is available during training and validation. Two kinds of proxy unknown nodes, inter-class unknown proxies and external unknown proxies are generated via mixup to efficiently anticipate the distribution of novel classes. Using the generated proxies, a closed-set classifier can be transformed into an open-set one, by augmenting it with an extra proxy classifier. Under the constraints of both cross entropy loss and complement entropy loss, $\mathcal{G}^2Pxy$ achieves superior effectiveness for unknown class detection and known class classification, which is validated by experiments on benchmark graph datasets. Moreover, $\mathcal{G}^2Pxy$ does not have specific requirement on the GNN architecture and shows good generalizations.

The evolutionary distance between two species is proportional to some (unknown) function of the time of divergence from their common ancestor. One way to estimate this time is by comparing the underlying macromolecular sequences that cascade the information of accumulated evolutionary changes across DNA RNA Proteins (sequence structure function). Since the introduction of the molecular evolutionary clock by Zuckerkandl and Pauling (1965) to perform phylogenetic studies, several statistical models have been proposed to estimate the divergence of extant sequences from common ancestors, and to correlate the estimates of time from other sources of information (e.g., fossil records) when they exist (Sarich and Wilson, 1967). Such divergence time estimates require reliable statistical models of DNA/RNA/Proteins macromolecules (Bromham and Penny, 2003). For protein amino acid sequences, several statistical models have been proposed to explain sequence variation as a function of time. The point accepted mutation (PAM) matrix of Dayhoff et al. (1978) was the first successful model to explain the mutability of amino acid sequences. PAM is a stochastic (Markov) matrix defined in PAM (time) units where PAM-1 is a Markov matrix that embodies a 1% expected change to the amino acids. Subsequent studies highlighted the importance of incorporating evolutionary time-dependent substitution and gap models as an elegant way to model the divergent relationships of proteins (Holmes, 1998; Gonnet et al., 1992). The recent approach of Sumanaweera et al. (2022) derives a unified statistical model for quantifying the evolution of pairs of protein sequences

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyperparameters in different experimental settings. Here, we present a multi-modality cell segmentation benchmark, comprising over 1500 labeled images derived from more than 50 diverse biological experiments. The top participants developed a Transformer-based deeplearning algorithm that not only exceeds existing methods, but can also be applied to diverse microscopy images across imaging platforms and tissue types without manual parameter adjustments. This benchmark and the improved algorithm offer promising avenues for more accurate and versatile cell analysis in microscopy imaging. Cell segmentation is a fundamental task that is universally required for biological image analysis across a large number of different experimental settings and imaging modalities. For example, in multiplexed fluorescence image-based cancer microenvironment analysis, cell segmentation is the prerequisite for the identification of tumor sub-types, composition, and organization, which can lead to important biological insights [1]-[3]. However, the development of a universal and automatic cell segmentation technique continues to pose significant challenges due to the extensive diversity observed in microscopy images. This diversity arises from variations in cell origins, microscopy types, staining techniques, and cell morphologies. Recent advances [4], [5] have successfully demonstrated the feasibility of automatic and precise cellular segmentation for specific microscopy image types and cell types, such as fluorescence and mass spectrometry images [6], [7], differential interference contrast images of platelets [8], bacteria images [9] and yeast images [10], [11], but the selection of appropriate segmentation models remains a non-trivial task for non-expert users in conventional biology laboratories. Efforts have been made towards the development of generalized cell segmentation algorithms [9], [12], [13]. However, these algorithms were primarily trained using datasets consisting of gray-scale images and two-channel fluorescent images, lacking the necessary diversity to ensure robust generalization across a wide range of imaging modalities. For example, the segmentation models have struggled to perform effectively on RGB images, such as bone marrow aspirate slides stained with Jenner-Giemsa. Furthermore, these models often require manual selection of both the model type and the specific image channel to be segmented, posing challenges for biologists with limited computational expertise. Biomedical image data science competitions have emerged as an effective way to accelerate the development of cutting-edge algorithms [14], [15].

Code summarization aims to generate concise natural language descriptions for source code. The prevailing approaches adopt transformer-based encoder-decoder architectures, where the Abstract Syntax Tree (AST) of the source code is utilized for encoding structural information. However, ASTs are much longer than the corresponding source code, and existing methods ignore this size constraint by directly feeding the entire linearized AST into the encoders. This simplistic approach makes it challenging to extract truly valuable dependency relations from the overlong input sequence and leads to significant computational overhead due to self-attention applied to all nodes in the AST. To address this issue effectively and efficiently, we present a model, AST-MHSA that uses multi-head attention to extract the important semantic information from the AST. The model consists of two main components: an encoder and a decoder. The encoder takes as input the abstract syntax tree (AST) of the code and generates a sequence of hidden states. The decoder then takes these hidden states as input and generates a natural language summary of the code. The multi-head attention mechanism allows the model to learn different representations of the input code, which can be combined to generate a more comprehensive summary. The model is trained on a dataset of code and summaries, and the parameters of the model are optimized to minimize the loss between the generated summaries and the ground-truth summaries.