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Visualizing and Interacting with Concept Hierarchies

arXiv.org Machine Learning

Concept Hierarchies and Formal Concept Analysis are theoretically well grounded and largely experimented methods. They rely on line diagrams called Galois lattices for visualizing and analysing object-attribute sets. Galois lattices are visually seducing and conceptually rich for experts. However they present important drawbacks due to their concept oriented overall structure: analysing what they show is difficult for non experts, navigation is cumbersome, interaction is poor, and scalability is a deep bottleneck for visual interpretation even for experts. In this paper we introduce semantic probes as a means to overcome many of these problems and extend usability and application possibilities of traditional FCA visualization methods. Semantic probes are visual user centred objects which extract and organize reduced Galois sub-hierarchies. They are simpler, clearer, and they provide a better navigation support through a rich set of interaction possibilities. Since probe driven sub-hierarchies are limited to users focus, scalability is under control and interpretation is facilitated. After some successful experiments, several applications are being developed with the remaining problem of finding a compromise between simplicity and conceptual expressivity.


Clustering on Multi-Layer Graphs via Subspace Analysis on Grassmann Manifolds

arXiv.org Machine Learning

Relationships between entities in datasets are often of multiple nature, like geographical distance, social relationships, or common interests among people in a social network, for example. This information can naturally be modeled by a set of weighted and undirected graphs that form a global multilayer graph, where the common vertex set represents the entities and the edges on different layers capture the similarities of the entities in term of the different modalities. In this paper, we address the problem of analyzing multi-layer graphs and propose methods for clustering the vertices by efficiently merging the information provided by the multiple modalities. To this end, we propose to combine the characteristics of individual graph layers using tools from subspace analysis on a Grassmann manifold. The resulting combination can then be viewed as a low dimensional representation of the original data which preserves the most important information from diverse relationships between entities. We use this information in new clustering methods and test our algorithm on several synthetic and real world datasets where we demonstrate superior or competitive performances compared to baseline and state-of-the-art techniques. Our generic framework further extends to numerous analysis and learning problems that involve different types of information on graphs.


Barnes-Hut-SNE

arXiv.org Machine Learning

The paper presents an O(N log N)-implementation of t-SNE -- an embedding technique that is commonly used for the visualization of high-dimensional data in scatter plots and that normally runs in O(N^2). The new implementation uses vantage-point trees to compute sparse pairwise similarities between the input data objects, and it uses a variant of the Barnes-Hut algorithm - an algorithm used by astronomers to perform N-body simulations - to approximate the forces between the corresponding points in the embedding. Our experiments show that the new algorithm, called Barnes-Hut-SNE, leads to substantial computational advantages over standard t-SNE, and that it makes it possible to learn embeddings of data sets with millions of objects.


K-Nearest Neighbour algorithm coupled with logistic regression in medical case-based reasoning systems. Application to prediction of access to the renal transplant waiting list in Brittany

arXiv.org Artificial Intelligence

Introduction. Case Based Reasoning (CBR) is an emerg- ing decision making paradigm in medical research where new cases are solved relying on previously solved similar cases. Usually, a database of solved cases is provided, and every case is described through a set of attributes (inputs) and a label (output). Extracting useful information from this database can help the CBR system providing more reliable results on the yet to be solved cases. Objective. For that purpose we suggest a general frame- work where a CBR system, viz. K-Nearest Neighbor (K-NN) algorithm, is combined with various information obtained from a Logistic Regression (LR) model. Methods. LR is applied, on the case database, to assign weights to the attributes as well as the solved cases. Thus, five possible decision making systems based on K-NN and/or LR were identified: a standalone K-NN, a standalone LR and three soft K-NN algorithms that rely on the weights based on the results of the LR. The evaluation of the described approaches is performed in the field of renal transplant access waiting list. Results and conclusion. The results show that our suggested approach, where the K-NN algorithm relies on both weighted attributes and cases, can efficiently deal with non relevant attributes, whereas the four other approaches suffer from this kind of noisy setups. The robustness of this approach suggests interesting perspectives for medical problem solving tools using CBR methodology.


Objective Improvement in Information-Geometric Optimization

arXiv.org Artificial Intelligence

Information-Geometric Optimization (IGO) is a unified framework of stochastic algorithms for optimization problems. Given a family of probability distributions, IGO turns the original optimization problem into a new maximization problem on the parameter space of the probability distributions. IGO updates the parameter of the probability distribution along the natural gradient, taken with respect to the Fisher metric on the parameter manifold, aiming at maximizing an adaptive transform of the objective function. IGO recovers several known algorithms as particular instances: for the family of Bernoulli distributions IGO recovers PBIL, for the family of Gaussian distributions the pure rank-mu CMA-ES update is recovered, and for exponential families in expectation parametrization the cross-entropy/ML method is recovered. This article provides a theoretical justification for the IGO framework, by proving that any step size not greater than 1 guarantees monotone improvement over the course of optimization, in terms of q-quantile values of the objective function f. The range of admissible step sizes is independent of f and its domain. We extend the result to cover the case of different step sizes for blocks of the parameters in the IGO algorithm. Moreover, we prove that expected fitness improves over time when fitness-proportional selection is applied, in which case the RPP algorithm is recovered.


Boolean Equi-propagation for Concise and Efficient SAT Encodings of Combinatorial Problems

Journal of Artificial Intelligence Research

We present an approach to propagation-based SAT encoding of combinatorial problems, Boolean equi-propagation, where constraints are modeled as Boolean functions which propagate information about equalities between Boolean literals. This information is then applied to simplify the CNF encoding of the constraints. A key factor is that considering only a small fragment of a constraint model at one time enables us to apply stronger, and even complete, reasoning to detect equivalent literals in that fragment. Once detected, equivalences apply to simplify the entire constraint model and facilitate further reasoning on other fragments. Equi-propagation in combination with partial evaluation and constraint simplification provide the foundation for a powerful approach to SAT-based finite domain constraint solving. We introduce a tool called BEE (Ben-Gurion Equi-propagation Encoder) based on these ideas and demonstrate for a variety of benchmarks that our approach leads to a considerable reduction in the size of CNF encodings and subsequent speed-ups in SAT solving times.


A Fast Iterative Bayesian Inference Algorithm for Sparse Channel Estimation

arXiv.org Machine Learning

In this paper, we present a Bayesian channel estimation algorithm for multicarrier receivers based on pilot symbol observations. The inherent sparse nature of wireless multipath channels is exploited by modeling the prior distribution of multipath components' gains with a hierarchical representation of the Bessel K probability density function; a highly efficient, fast iterative Bayesian inference method is then applied to the proposed model. The resulting estimator outperforms other state-of-the-art Bayesian and non-Bayesian estimators, either by yielding lower mean squared estimation error or by attaining the same accuracy with improved convergence rate, as shown in our numerical evaluation.


A fuzzy relation-based extension of Reggia's relational model for diagnosis handling uncertain and incomplete information

arXiv.org Artificial Intelligence

Relational models for diagnosis are based on a direct description of the association between disorders and manifestations. This type of model has been specially used and developed by Reggia and his co-workers in the late eighties as a basic starting point for approaching diagnosis problems. The paper proposes a new relational model which includes Reggia's model as a particular case and which allows for a more expressive representation of the observations and of the manifestations associated with disorders. The model distinguishes, i) between manifestations which are certainly absent and those which are not (yet) observed, and ii) between manifestations which cannot be caused by a given disorder and manifestations for which we do not know if they can or cannot be caused by this disorder. This new model, which can handle uncertainty in a non-probabilistic way, is based on possibility theory and so-called twofold fuzzy sets, previously introduced by the authors.


RIO: Minimizing User Interaction in Debugging of Knowledge Bases

arXiv.org Artificial Intelligence

The best currently known interactive debugging systems rely upon some meta-information in terms of fault probabilities in order to improve their efficiency. However, misleading meta information might result in a dramatic decrease of the performance and its assessment is only possible a-posteriori. Consequently, as long as the actual fault is unknown, there is always some risk of suboptimal interactions. In this work we present a reinforcement learning strategy that continuously adapts its behavior depending on the performance achieved and minimizes the risk of using low-quality meta information. Therefore, this method is suitable for application scenarios where reliable prior fault estimates are difficult to obtain. Using diverse real-world knowledge bases, we show that the proposed interactive query strategy is scalable, features decent reaction time, and outperforms both entropy-based and no-risk strategies on average w.r.t. required amount of user interaction.


Normative Engineering Risk Management Systems

arXiv.org Artificial Intelligence

This paper describes a normative system design that incorporates diagnosis, dynamic evolution, decision making, and information gathering. A single influence diagram demonstrates the design's coherence, yet each activity is more effectively modeled and evaluated separately. Application to offshore oil platforms illustrates the design. For this application, the normative system is embedded in a real-time expert system.