This study investigates the correlation between dairy farm characteristics and methane concentrations as derived from satellite observations in Eastern Canada. Utilizing data from 11 dairy farms collected between January 2020 and December 2022, we integrated Sentinel-5P satellite methane data with critical farm-level attributes, including herd genetics, feeding practices, and management strategies. Initial analyses revealed significant correlations with methane concentrations, leading to the application of Variance Inflation Factor (VIF) and Principal Component Analysis (PCA) to address multicollinearity and enhance model stability. Subsequently, machine learning models - specifically Random Forest and Neural Networks - were employed to evaluate feature importance and predict methane emissions. Our findings indicate a strong negative correlation between the Estimated Breeding Value (EBV) for protein percentage and methane concentrations, suggesting that genetic selection for higher milk protein content could be an effective strategy for emissions reduction. The integration of atmospheric transport models with satellite data further refined our emission estimates, significantly enhancing accuracy and spatial resolution. This research underscores the potential of advanced satellite monitoring, machine learning techniques, and atmospheric modeling in improving methane emission assessments within the dairy sector. It emphasizes the critical role of farm-specific characteristics in developing effective mitigation strategies. Future investigations should focus on expanding the dataset and incorporating inversion modeling for more precise emission quantification. Balancing ecological impacts with economic viability will be essential for fostering sustainable dairy farming practices.

Protein language models (PLMs) have demonstrated remarkable success in protein modeling and design, yet their internal mechanisms for predicting structure and function remain poorly understood. Here we present a systematic approach to extract and analyze interpretable features from PLMs using sparse autoencoders (SAEs). By training SAEs on embeddings from the PLM ESM-2, we identify up to 2,548 human-interpretable latent features per layer that strongly correlate with up to 143 known biological concepts such as binding sites, structural motifs, and functional domains. In contrast, examining individual neurons in ESM-2 reveals up to 46 neurons per layer with clear conceptual alignment across 15 known concepts, suggesting that PLMs represent most concepts in superposition. Beyond capturing known annotations, we show that ESM-2 learns coherent concepts that do not map onto existing annotations and propose a pipeline using language models to automatically interpret novel latent features learned by the SAEs. As practical applications, we demonstrate how these latent features can fill in missing annotations in protein databases and enable targeted steering of protein sequence generation. Our results demonstrate that PLMs encode rich, interpretable representations of protein biology and we propose a systematic framework to extract and analyze these latent features. In the process, we recover both known biology and potentially new protein motifs. As community resources, we introduce InterPLM (interPLM.ai), an interactive visualization platform for exploring and analyzing learned PLM features, and release code for training and analysis at github.com/ElanaPearl/interPLM.

Speech-to-Speech Translation (S2ST) models transform speech from one language to another target language with the same linguistic information. S2ST is important for bridging the communication gap among communities and has diverse applications. In recent years, researchers have introduced direct S2ST models, which have the potential to translate speech without relying on intermediate text generation, have better decoding latency, and the ability to preserve paralinguistic and non-linguistic features. However, direct S2ST has yet to achieve quality performance for seamless communication and still lags behind the cascade models in terms of performance, especially in real-world translation. To the best of our knowledge, no comprehensive survey is available on the direct S2ST system, which beginners and advanced researchers can look upon for a quick survey. The present work provides a comprehensive review of direct S2ST models, data and application issues, and performance metrics. We critically analyze the models' performance over the benchmark datasets and provide research challenges and future directions.

Artificial Intelligence (AI) and infectious diseases prediction have recently experienced a common development and advancement. Machine learning (ML) apparition, along with deep learning (DL) emergence, extended many approaches against diseases apparition and their spread. And despite their outstanding results in predicting infectious diseases, conflicts appeared regarding the types of data used and how they can be studied, analyzed, and exploited using various emerging methods. This has led to some ongoing discussions in the field. This research aims not only to provide an overview of what has been accomplished, but also to highlight the difficulties related to the types of data used, and the learning methods applied for each research objective. It categorizes these contributions into three areas: predictions using Public Health Data to prevent the spread of a transmissible disease within a region; predictions using Patients' Medical Data to detect whether a person is infected by a transmissible disease; and predictions using both Public and patient medical data to estimate the extent of disease spread in a population. The paper also critically assesses the potential of AI and outlines its limitations in infectious disease management.

Incorporating external knowledge into dialogue generation has been proven to benefit the performance of an open-domain Dialogue System (DS), such as generating informative or stylized responses, controlling conversation topics. In this article, we study the open-domain DS that uses unstructured text as external knowledge sources (\textbf{U}nstructured \textbf{T}ext \textbf{E}nhanced \textbf{D}ialogue \textbf{S}ystem, \textbf{UTEDS}). The existence of unstructured text entails distinctions between UTEDS and traditional data-driven DS and we aim to analyze these differences. We first give the definition of the UTEDS related concepts, then summarize the recently released datasets and models. We categorize UTEDS into Retrieval and Generative models and introduce them from the perspective of model components. The retrieval models consist of Fusion, Matching, and Ranking modules, while the generative models comprise Dialogue and Knowledge Encoding, Knowledge Selection, and Response Generation modules. We further summarize the evaluation methods utilized in UTEDS and analyze the current models' performance. At last, we discuss the future development trends of UTEDS, hoping to inspire new research in this field.

This paper introduces the \emph{Optimist}, an autonomous system developed to advance automated conjecture generation in graph theory. Leveraging mixed-integer programming (MIP) and heuristic methods, the \emph{Optimist} generates conjectures that both rediscover established theorems and propose novel inequalities. Through a combination of memory-based computation and agent-like adaptability, the \emph{Optimist} iteratively refines its conjectures by integrating new data, enabling a feedback process with minimal human (\emph{or machine}) intervention. Initial experiments reveal the \emph{Optimist}'s potential to uncover foundational results in graph theory, as well as to produce conjectures of interest for future exploration. This work also outlines the \emph{Optimist}'s evolving integration with a counterpart agent, the \emph{Pessimist} (a human \emph{or machine} agent), to establish a dueling system that will drive fully automated graph theory research.

Recent advancements in large language models (LLMs) showcase varied multilingual capabilities across tasks like translation, code generation, and reasoning. Previous assessments often limited their scope to fundamental natural language processing (NLP) or isolated capability-specific tasks. To alleviate this drawback, we aim to present a comprehensive multilingual multitask benchmark. First, we present a pipeline for selecting available and reasonable benchmarks from massive ones, addressing the oversight in previous work regarding the utility of these benchmarks, i.e., their ability to differentiate between models being evaluated. Leveraging this pipeline, we introduce P-MMEval, a large-scale benchmark covering effective fundamental and capability-specialized datasets. Furthermore, P-MMEval delivers consistent language coverage across various datasets and provides parallel samples. Finally, we conduct extensive experiments on representative multilingual model series to compare performances across models, analyze dataset effectiveness, examine prompt impacts on model performances, and explore the relationship between multilingual performances and factors such as tasks, model sizes, and languages. These insights offer valuable guidance for future research. The dataset is available at https://huggingface.co/datasets/Qwen/P-MMEval.

Code-mixing(CM) or code-switching(CSW) refers to the juxtaposition of linguistic units from two or more languages during the conversation or sometimes even a single utterance. Code-mixing introduces unique challenges in daily life, such as syntactic mismatches and semantic blending, that are rarely encountered in monolingual settings. Large language models (LLMs) have revolutionized the field of natural language processing (NLP) by offering unprecedented capabilities in understanding human languages. However, the effectiveness of current state-of-the-art multilingual LLMs has not yet been fully explored in the CM scenario. To fill this gap, we first benchmark the performance of multilingual LLMs on various code-mixing NLP tasks. Then we propose to improve the multilingual LLMs' ability to understand code-mixing through reinforcement learning from human feedback (RLHF) and code-mixed machine translation tasks. Given the high-cost and time-consuming preference labeling procedure, we improve this by utilizing LLMs as annotators to perform the reinforcement learning from AI feedback (RLAIF). The experiments show the effectiveness of the proposed method.

This paper proposes a novel reinforcement learning framework to address the Liner Shipping Network Design Problem (LSNDP), a challenging combinatorial optimization problem focused on designing cost-efficient maritime shipping routes. Traditional methods for solving the LSNDP typically involve decomposing the problem into sub-problems, such as network design and multi-commodity flow, which are then tackled using approximate heuristics or large neighborhood search (LNS) techniques. In contrast, our approach employs a model-free reinforcement learning algorithm on the network design, integrated with a heuristic-based multi-commodity flow solver, to produce competitive results on the publicly available LINERLIB benchmark. Additionally, our method also demonstrates generalization capabilities by producing competitive solutions on the benchmark instances after training on perturbed instances.

Many studies have predicted SocioEconomic Position (SEP) for aggregated spatial units such as villages using satellite data, but SEP prediction at the household level and other sources of imagery have not been yet explored. We assembled a dataset of 975 households in a semi-rural district in southern Mozambique, consisting of self-reported asset, expenditure, and income SEP data, as well as multimodal imagery including satellite images and a ground-based photograph survey of 11 household elements. We fine-tuned a convolutional neural network to extract feature vectors from the images, which we then used in regression analyzes to model household SEP using different sets of image types. The best prediction performance was found when modeling asset-based SEP using random forest models with all image types, while the performance for expenditure- and income-based SEP was lower. Using SHAP, we observed clear differences between the images with the largest positive and negative effects, as well as identified the most relevant household elements in the predictions. Finally, we fitted an additional reduced model using only the identified relevant household elements, which had an only slightly lower performance compared to models using all images. Our results show how ground-based household photographs allow to zoom in from an area-level to an individual household prediction while minimizing the data collection effort by using explainable machine learning. The developed workflow can be potentially integrated into routine household surveys, where the collected household imagery could be used for other purposes, such as refined asset characterization and environmental exposure assessment.