training data
PRESCRIBE: Predicting Single-Cell Responses with Bayesian Estimation
In single-cell perturbation prediction, a central task is to forecast the effects of perturbing a gene unseen in the training data. The efficacy of such predictions depends on two factors: (1) the similarity of the target gene to those covered in the training data, which informs model (epistemic) uncertainty, and (2) the quality of the corresponding training data, which reflects data (aleatoric) uncertainty. Both factors are critical for determining the reliability of a prediction, particularly as gene perturbation is an inherently stochastic biochemical process. In this paper, we propose PRESCRIBE (PREdicting Single-Cell Response wIth Bayesian Estimation), a multivariate deep evidential regression framework designed to measure both sources of uncertainty jointly. Our analysis demonstrates that PRESCRIBE effectively estimates a confidence score for each prediction, which strongly correlates with its empirical accuracy. This capability enables the filtering of untrustworthy results, and in our experiments, it achieves steady accuracy improvements of over 3% compared to comparable baselines.
EAGLE-3: Scaling up Inference Acceleration of Large Language Models via Training-Time Test
The sequential nature of modern LLMs makes them expensive and slow, and speculative sampling has proven to be an effective solution to this problem. Methods like EAGLE perform autoregression at the feature level, reusing top-layer features from the target model to achieve better results than vanilla speculative sampling. A growing trend in the LLM community is scaling up training data to improve model intelligence without increasing inference costs. However, we observe that scaling up data provides limited improvements for EAGLE. We identify that this limitation arises from EAGLE's feature prediction constraints.
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Understanding what and how neural networks memorize during training is crucial, both from the perspective of unintentional memorization of potentially sensitive information and from the standpoint of effective knowledge acquisition for realworld, knowledge-intensive tasks. While previous studies primarily investigate memorization within a single modality, such as text memorization in large language models or image memorization in diffusion models, unified multimodal models are becoming increasingly prevalent in practical applications. In this work, we focus on the unique characteristics of cross-modality memorization and conduct a systematic study centered on vision-language models. To facilitate controlled experiments, we first introduce a synthetic persona dataset comprising diverse synthetic person images and textual descriptions. We quantify factual knowledge memorization and cross-modal transferability by training models on a single modality and evaluating their performance in the other. Our results reveal that facts learned in one modality transfer to the other, but a significant gap exists between recalling information in the "source" and "target" modalities. Furthermore, we observe that this gap exists across various scenarios, including more capable models, machine unlearning, and the multi-hop case. At the end, we propose a baseline method to mitigate this challenge. We hope our study can inspire future research on developing more robust multimodal learning techniques to enhance cross-modal transferability.
Knowledge Distillation Detection for Open-weights Models
We propose the task of knowledge distillation detection, which aims to determine whether a student model has been distilled from a given teacher, under a practical setting where only the student's weights and the teacher's API are available. This problem is motivated by growing concerns about model provenance and unauthorized replication through distillation. To address this task, we introduce a model-agnostic framework that combines data-free input synthesis and statistical score computation for detecting distillation. Our approach is applicable to both classification and generative models. Experiments on diverse architectures for image classification and text-to-image generation show that our method improves detection accuracy over the strongest baselines by 59.6% on CIFAR-10, 71.2% on ImageNet, and 20.0% for text-to-image generation.
aa5642fb7d78a1bca9ceba3d8bd564f4-Paper-Conference.pdf
The application of machine learning (ML) to electroencephalography (EEG) has great potential to advance both neuroscientific research and clinical applications. However, the generalisability and robustness of EEG-based ML models often hinge on the amount and diversity of training data. It is common practice to split EEG recordings into small segments, thereby increasing the number of samples substantially compared to the number of individual recordings or participants. We conceptualise this as a multi-level data generation process and investigate the scaling behaviour of model performance with respect to the overall sample size and the participant diversity through large-scale empirical studies. We then use the same framework to investigate the effectiveness of different ML strategies designed to address limited data problems: data augmentations and self-supervised learning. Our findings show that model performance scaling can be severely constrained by participant distribution shifts and provide actionable guidance for data collection and ML research. The code for our experiments is publicly available online.1
For Better or for Worse, Transformers Seek Patterns for Memorization
Memorization in language models is a critical yet poorly understood phenomenon. In this work, we investigate memorization in transformer-based language models by analyzing their memorization dynamics during training over multiple epochs. We find that memorization is neither a constant accumulation of sequences nor simply dictated by the recency of exposure to these sequences. Instead, much like generalization, memorization appears to be driven by pattern recognition. Tracking memorization dynamics in mixed datasets, we observe that models memorize different sub-datasets in distinct bursts, suggesting that each subset is associated with unique underlying patterns, and that the model prefers to learn these patterns in a consistent order. We also find that easily learnable patterns tend to support generalization on unseen data, while more complex patterns do not. Furthermore, in datasets with weak or absent patterns, larger models may delay memorization relative to smaller ones, a behavior we term overthinking. Our results show that the subset of sequences memorized by a model over time is not arbitrary, and give insights into the internal processes a model goes through during training.
Force Prompting: Video Generation Models Can Learn and Generalize Physics-based Control Signals
Recent advances in video generation models have sparked interest in world models capable of simulating realistic environments. While navigation has been wellexplored, physically meaningful interactions that mimic real-world forces remain largely understudied. In this work, we investigate using physical forces as a control signal for video generation and propose force prompts which enable users to interact with images through both localized point forces, such as poking a plant, and global wind force fields, such as wind blowing on fabric. We demonstrate that these force prompts can enable videos to respond realistically to physical control signals by leveraging the visual and motion prior in the original pretrained model, without using any 3D asset or physics simulator at inference. The primary challenge of force prompting is the difficulty in obtaining high quality paired force-video training data, both in the real world due to the difficulty of obtaining force signals, and in synthetic data due to limitations in the visual quality and domain diversity of physics simulators.
94da80cbfe870c1db958c88a8a27018c-Paper-Conference.pdf
F ne oundation w capabilities models be trained yond their at sca initial le exhibit training remarkable objectiv emer es. W gent e find beha such viors, emer learning gent behaviors in biological vision models via large-scale contrastive vision-language training. To achieve this, we first curate TREEOFLIFE-200M, comprising 214 million ism image images dataset of li to ving date.
Enhancing Training Data Attribution with Representational Optimization
Training data attribution (TDA) methods aim to measure how training data impacts a model's predictions. While gradient-based attribution methods, such as influence functions, offer theoretical grounding, their computational costs make them impractical for large-scale applications. Representation-based approaches are far more scalable, but typically rely on heuristic embeddings that are not optimized for attribution, limiting their fidelity. To address these challenges, we propose AirRep, a scalable, representation-based approach that closes this gap by learning task-specific and model-aligned representations optimized explicitly for TDA. AirRep introduces two key innovations: a trainable encoder tuned for attribution quality, and an attention-based pooling mechanism that enables accurate estimation of group-wise influence. We train AirRep using a ranking objective over automatically constructed training subsets labeled by their empirical effect on target predictions. Experiments on instruction-tuned LLMs demonstrate that AirRep achieves performance on par with state-of-the-art gradient-based approaches while being nearly two orders of magnitude more efficient at inference time. Further analysis highlights its robustness and generalization across tasks and models.