subarachnoid hemorrhage
LoRA-based methods on Unet for transfer learning in Subarachnoid Hematoma Segmentation
Minoccheri, Cristian, Hodgman, Matthew, Ma, Haoyuan, Merchant, Rameez, Wittrup, Emily, Williamson, Craig, Najarian, Kayvan
Aneurysmal subarachnoid hemorrhage (SAH) is a life-threatening neurological emergency with mortality rates exceeding 30%. Transfer learning from related hematoma types represents a potentially valuable but underexplored approach. Although Unet architectures remain the gold standard for medical image segmentation due to their effectiveness on limited datasets, Low-Rank Adaptation (LoRA) methods for parameter-efficient transfer learning have been rarely applied to convolutional neural networks in medical imaging contexts. We implemented a Unet architecture pre-trained on computed tomography scans from 124 traumatic brain injury patients across multiple institutions, then fine-tuned on 30 aneurysmal SAH patients from the University of Michigan Health System using 3-fold cross-validation. We developed a novel CP-LoRA method based on tensor CP-decomposition and introduced DoRA variants (DoRA-C, convDoRA, CP-DoRA) that decompose weight matrices into magnitude and directional components. We compared these approaches against existing LoRA methods (LoRA-C, convLoRA) and standard fine-tuning strategies across different modules on a multi-view Unet model. LoRA-based methods consistently outperformed standard Unet fine-tuning. Performance varied by hemorrhage volume, with all methods showing improved accuracy for larger volumes. CP-LoRA achieved comparable performance to existing methods while using significantly fewer parameters. Over-parameterization with higher ranks consistently yielded better performance than strictly low-rank adaptations. This study demonstrates that transfer learning between hematoma types is feasible and that LoRA-based methods significantly outperform conventional Unet fine-tuning for aneurysmal SAH segmentation.
- North America > United States > Michigan (0.26)
- North America > United States > Missouri (0.04)
- North America > United States > Florida > Palm Beach County > Boca Raton (0.04)
- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Therapeutic Area > Hematology (1.00)
- Health & Medicine > Therapeutic Area > Cardiology/Vascular Diseases (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (1.00)
A Fully Automated Pipeline Using Swin Transformers for Deep Learning-Based Blood Segmentation on Head CT Scans After Aneurysmal Subarachnoid Hemorrhage
Garcia, Sergio Garcia, Cepeda, Santiago, Arrese, Ignacio, Sarabia, Rosario
Background: Accurate volumetric assessment of spontaneous subarachnoid hemorrhage (SAH) is a labor-intensive task performed with current manual and semiautomatic methods that might be relevant for its clinical and prognostic implications. In the present research, we sought to develop and validate an artificial intelligence-driven, fully automated blood segmentation tool for SAH patients via noncontrast computed tomography (NCCT) scans employing a transformer-based Swin UNETR architecture. Methods: We retrospectively analyzed NCCT scans from patients with confirmed aneurysmal subarachnoid hemorrhage (aSAH) utilizing the Swin UNETR for segmentation. The performance of the proposed method was evaluated against manually segmented ground truth data using metrics such as Dice score, intersection over union (IoU), the volumetric similarity index (VSI), the symmetric average surface distance (SASD), and sensitivity and specificity. A validation cohort from an external institution was included to test the generalizability of the model. Results: The model demonstrated high accuracy with robust performance metrics across the internal and external validation cohorts. Notably, it achieved high Dice coefficient (0.873), IoU (0.810), VSI (0.840), sensitivity (0.821) and specificity (0.996) values and a low SASD (1.866), suggesting proficiency in segmenting blood in SAH patients. The model's efficiency was reflected in its processing speed, indicating potential for real-time applications. Conclusions: Our Swin UNETR-based model offers significant advances in the automated segmentation of blood after aSAH on NCCT images. Despite the computational intensity, the model operates effectively on standard hardware with a user-friendly interface, facilitating broader clinical adoption. Further validation across diverse datasets is warranted to confirm its clinical reliability.
- South America > Chile > Santiago Metropolitan Region > Santiago Province > Santiago (0.04)
- North America > United States (0.04)
- Europe > Switzerland > Basel-City > Basel (0.04)
- (5 more...)
- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Therapeutic Area > Hematology (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (1.00)
Enhanced Mortality Prediction In Patients With Subarachnoid Haemorrhage Using A Deep Learning Model Based On The Initial CT Scan
Garcia-Garcia, Sergio, Cepeda, Santiago, Muller, Dominik, Mosteiro, Alejandra, Torne, Ramon, Agudo, Silvia, de la Torre, Natalia, Arrese, Ignacio, Sarabia, Rosario
PURPOSE: Subarachnoid hemorrhage (SAH) entails high morbidity and mortality rates. Convolutional neural networks (CNN), a form of deep learning, are capable of generating highly accurate predictions from imaging data. Our objective was to predict mortality in SAH patients by processing the initial CT scan on a CNN based algorithm. METHODS: Retrospective multicentric study of a consecutive cohort of patients with SAH between 2011-2022. Demographic, clinical and radiological variables were analyzed. Pre-processed baseline CT scan images were used as the input for training a CNN using AUCMEDI Framework. Our model's architecture leverages the DenseNet-121 structure, employing transfer learning principles. The output variable was mortality in the first three months. Performance of the model was evaluated by statistical parameters conventionally used in studies involving artificial intelligence methods. RESULTS: Images from 219 patients were processed, 175 for training and validation of the CNN and 44 for its evaluation. 52%(115/219) of patients were female, and the median age was 58(SD=13.06) years. 18.5%(39/219) were idiopathic SAH. Mortality rate was 28.5%(63/219). The model showed good accuracy at predicting mortality in SAH patients exclusively using the images of the initial CT scan (Accuracy=74%, F1=75% and AUC=82%). CONCLUSION: Modern image processing techniques based on AI and CNN make possible to predict mortality in SAH patients with high accuracy using CT scan images as the only input. These models might be optimized by including more data and patients resulting in better training, development and performance on tasks which are beyond the skills of conventional clinical knowledge.
- South America > Chile > Santiago Metropolitan Region > Santiago Province > Santiago (0.04)
- North America > United States > Indiana (0.04)
- Europe > Spain > Catalonia > Barcelona Province > Barcelona (0.04)
- (5 more...)
- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
- Health & Medicine > Therapeutic Area (1.00)
- Health & Medicine > Diagnostic Medicine > Imaging (1.00)
Machine learning improves prediction of cerebral ischemia after subarachnoid hemorrhage
Machine learning models significantly outperformed standard models in predicting delayed cerebral ischemia and functional outcomes at 3 months after a subarachnoid hemorrhage, according to findings published in Neurology. "After subarachnoid hemorrhage (SAH), delayed cerebral ischemia (DCI) is the biggest contributor to poor functional outcomes," Jude P.J. Savarraj, PhD, a bioinformatics postdoctoral fellow in the department of neurosurgery at McGovern Medical School, and colleagues wrote. "Previous studies show that several [electronic medical record] parameters, including white blood count panel, measures of coagulation and fibrinolysis, serum glucose and sodium and vital signs (including ECG and BP) are either marginally or strongly associated with DCI and functional outcomes." The researchers hypothesized that machine learning models would be able to learn these associations and accurately predict DCI and functional outcomes and outperform standard models. To test this, Savarraj and colleagues performed a retrospective analysis of outcomes among 451 patients [women, 290; average age, 54 years; median modified Rankin Scale score (mRS) at discharge 3; median mRS at month 3 1] who had a subarachnoid hemorrhage between July 2009 and August 2016.
- Health & Medicine > Therapeutic Area > Neurology (1.00)
- Health & Medicine > Therapeutic Area > Hematology (1.00)