Hence, we consider asking a VLM to provide the scientific name of the organism shown in a given image. There are two types of questions that we consider for this task. First, we consider open-ended questions, where we do not provide any answer choices (or options) to the VLM in the input prompt.

Foundation models trained at scale exhibit remarkable emergent behaviors, learning new capabilities beyond their initial training objectives. We find such emergent behaviors in biological vision models via large-scale contrastive vision-language training. To achieve this, we first curate TreeOfLife-200M, comprising 214 million images of living organisms, the largest and most diverse biological organism image dataset to date. We then train BioCLIP 2 on TreeOfLife-200M to distinguish different species. Despite the narrow training objective, BioCLIP 2 yields extraordinary accuracy when applied to various biological visual tasks such as habitat classification and trait prediction. We identify emergent properties in the learned embedding space of BioCLIP 2. At the inter-species level, the embedding distribution of different species aligns closely with functional and ecological meanings (e.g., beak sizes and habitats). At the intra-species level, instead of being diminished, the intra-species variations (e.g., life stages and sexes) are preserved and better separated in subspaces orthogonal to inter-species distinctions. We provide formal proof and analyses to explain why hierarchical supervision and contrastive objectives encourage these emergent properties. Crucially, our results reveal that these properties become increasingly significant with larger-scale training data, leading to a biologically meaningful embedding space.

-- Interest in robotics for forest management is growing, but perception in complex, natural environments remains a significant hurdle. Conditions such as heavy occlusion, variable lighting, and dense vegetation pose challenges to automated systems, which are essential for precision forestry, biodiversity monitoring, and the automation of forestry equipment. These tasks rely on advanced perceptual capabilities, such as detection and fine-grained species classification of individual trees. Y et, existing datasets are inadequate to develop such perception systems, as they often focus on urban settings or a limited number of species. T o address this, we present SilvaScenes, a new dataset for instance segmentation of tree species from under-canopy images. Collected across five bioclimatic domains in Quebec, Canada, SilvaScenes features 1476 trees from 24 species with annotations from forestry experts. We demonstrate the relevance and challenging nature of our dataset by bench-marking modern deep learning approaches for instance segmentation. Our results show that, while tree segmentation is easy, with a top mean average precision (mAP) of 67. Segmentation and species classification of individual trees are key perception tasks for forestry applications, such as biodiversity monitoring and precision forestry [1].

Hence, we consider asking a VLM to provide the scientific name of the organism shown in a given image. There are two types of questions that we consider for this task. First, we consider open-ended questions, where we do not provide any answer choices (or options) to the VLM in the input prompt.

Field trials are vital in herbicide research and development to assess effects on crops and weeds under varied conditions. Traditionally, evaluations rely on manual visual assessments, which are time-consuming, labor-intensive, and subjective. Automating species and damage identification is challenging due to subtle visual differences, but it can greatly enhance efficiency and consistency. We present an improved segmentation model combining a general-purpose self-supervised visual model with hierarchical inference based on botanical taxonomy. Trained on a multi-year dataset (2018-2020) from Germany and Spain using digital and mobile cameras, the model was tested on digital camera data (year 2023) and drone imagery from the United States, Germany, and Spain (year 2024) to evaluate robustness under domain shift. This cross-device evaluation marks a key step in assessing generalization across platforms of the model. Our model significantly improved species identification (F1-score: 0.52 to 0.85, R-squared: 0.75 to 0.98) and damage classification (F1-score: 0.28 to 0.44, R-squared: 0.71 to 0.87) over prior methods. Under domain shift (drone images), it maintained strong performance with moderate degradation (species: F1-score 0.60, R-squared 0.80; damage: F1-score 0.41, R-squared 0.62), where earlier models failed. These results confirm the model's robustness and real-world applicability. It is now deployed in BASF's phenotyping pipeline, enabling large-scale, automated crop and weed monitoring across diverse geographies.

Tree species classification from terrestrial LiDAR point clouds is challenging because of the complex multi-scale geometric structures in forest environments. Existing approaches using multi-scale dynamic graph convolutional neural networks (MS-DGCNN) employ parallel multi-scale processing, which fails to capture the semantic relationships between the hierarchical levels of the tree architecture. We present MS-DGCNN++, a hierarchical multiscale fusion dynamic graph convolutional network that uses semantically meaningful feature extraction at local, branch, and canopy scales with cross-scale information propagation. Our method employs scale-specific feature engineering, including standard geometric features for the local scale, normalized relative vectors for the branch scale, and distance information for the canopy scale. This hierarchical approach replaces uniform parallel processing with semantically differentiated representations that are aligned with the natural tree structure. Under the same proposed tree species data augmentation strategy for all experiments, MS-DGCNN++ achieved an accuracy of 94.96 \% on STPCTLS, outperforming DGCNN, MS-DGCNN, and the state-of-the-art model PPT. On FOR-species20K, it achieves 67.25\% accuracy (6.1\% improvement compared to MS-DGCNN). For standard 3D object recognition, our method outperformed DGCNN and MS-DGCNN with overall accuracies of 93.15\% on ModelNet40 and 94.05\% on ModelNet10. With lower parameters and reduced complexity compared to state-of-the-art transformer approaches, our method is suitable for resource-constrained applications while maintaining a competitive accuracy. Beyond tree classification, the method generalizes to standard 3D object recognition, establishing it as a versatile solution for diverse point cloud processing applications. The implementation code is publicly available at https://github.com/said-ohamouddou/MS-DGCNN2.

Understanding and monitoring aquatic biodiversity is critical for ecological health and conservation efforts. This paper proposes SuoiAI, an end-to-end pipeline for building a dataset of aquatic invertebrates in Vietnam and employing machine learning (ML) techniques for species classification. We outline the methods for data collection, annotation, and model training, focusing on reducing annotation effort through semi-supervised learning and leveraging state-of-the-art object detection and classification models. Our approach aims to overcome challenges such as data scarcity, fine-grained classification, and deployment in diverse environmental conditions.

The precise identification of tree species is fundamental to forestry, conservation, and environmental monitoring. Though many studies have demonstrated that high accuracy can be achieved using bark-based species classification, these models often function as "black boxes", limiting interpretability, trust, and adoption in critical forestry applications. Attribution-based Explainable AI (XAI) methods have been used to address this issue in related works. However, XAI applications are often dependent on local features (such as a head shape or paw in animal applications) and cannot describe global visual features (such as ruggedness or smoothness) that are present in texture-dominant images such as tree bark. Concept-based XAI methods, on the other hand, offer explanations based on global visual features with concepts, but they tend to require large overhead in building external concept image datasets and the concepts can be vague and subjective without good means of precise quantification. To address these challenges, we propose a lightweight post-hoc method to interpret visual models for tree species classification using operators and quantifiable concepts. Our approach eliminates computational overhead, enables the quantification of complex concepts, and evaluates both concept importance and the model's reasoning process. To the best of our knowledge, our work is the first study to explain bark vision models in terms of global visual features with concepts. Using a human-annotated dataset as ground truth, our experiments demonstrate that our method significantly outperforms TCAV and Llama3.2 in concept importance ranking based on Kendall's Tau, highlighting its superior alignment with human perceptions.

The current biodiversity loss crisis makes animal monitoring a relevant field of study. In light of this, data collected through monitoring can provide essential insights, and information for decision-making aimed at preserving global biodiversity. Despite the importance of such data, there is a notable scarcity of datasets featuring videos of birds, and none of the existing datasets offer detailed annotations of bird behaviors in video format. In response to this gap, our study introduces the first fine-grained video dataset specifically designed for bird behavior detection and species classification. This dataset addresses the need for comprehensive bird video datasets and provides detailed data on bird actions, facilitating the development of deep learning models to recognize these, similar to the advancements made in human action recognition. The proposed dataset comprises 178 videos recorded in Spanish wetlands, capturing 13 different bird species performing 7 distinct behavior classes.

The pre-training and fine-tuning paradigm has revolutionized satellite remote sensing applications. However, this approach remains largely underexplored for airborne laser scanning (ALS), an important technology for applications such as forest management and urban planning. In this study, we address this gap by constructing a large-scale ALS point cloud dataset and evaluating its impact on downstream applications. Our dataset comprises ALS point clouds collected across the contiguous United States, provided by the United States Geological Survey's 3D Elevation Program. To ensure efficient data collection while capturing diverse land cover and terrain types, we introduce a geospatial sampling method that selects point cloud tiles based on land cover maps and digital elevation models. As a baseline self-supervised learning model, we adopt BEV-MAE, a state-of-the-art masked autoencoder for 3D outdoor point clouds, and pre-train it on the constructed dataset. The pre-trained models are subsequently fine-tuned for downstream tasks, including tree species classification, terrain scene recognition, and point cloud semantic segmentation. Our results show that the pre-trained models significantly outperform their scratch counterparts across all downstream tasks, demonstrating the transferability of the representations learned from the proposed dataset. Furthermore, we observe that scaling the dataset using our geospatial sampling method consistently enhances performance, whereas pre-training on datasets constructed with random sampling fails to achieve similar improvements. These findings highlight the utility of the constructed dataset and the effectiveness of our sampling strategy in the pre-training and fine-tuning paradigm. The source code and pre-trained models will be made publicly available at \url{https://github.com/martianxiu/ALS_pretraining}.