single neuron
Bounds on the computational complexity of neurons due to dendritic morphology
The simple linear threshold units used in many artificial neural networks have a limited computational capacity. Famously, a single unit cannot handle nonlinearly separable problems like XOR. In contrast, real neurons exhibit complex morphologies as well as active dendritic integration, suggesting that their computational capacities outperform those of simple linear units. Considering specific families of Boolean functions, we empirically examine the computational limits of single units that incorporate more complex dendritic structures. For random Boolean functions, we show that there is a phase transition in learnability as a function of the input dimension, with most random functions below a certain critical dimension being learnable and those above not.
Generalized and Invariant Single-Neuron In-Vivo Activity Representation Learning
In computational neuroscience, models representing single-neuron in-vivo activity have become essential for understanding the functional identities of individual neurons. These models, such as implicit representation methods based on Transformer architectures, contrastive learning frameworks, and variational autoencoders, aim to capture the invariant and intrinsic computational features of single neurons. The learned single-neuron computational role representations should remain invariant across changing environment and are affected by their molecular expression and location. Thus, the representations allow for in vivo prediction of the molecular cell types and anatomical locations of single neurons, facilitating advanced closed-loop experimental designs. However, current models face the problem of limited generalizability.
realSEUDO for real-time calcium imaging analysis
Closed-loop neuroscience experimentation, where recorded neural activity is used to modify the experiment on-the-fly, is critical for deducing causal connections and optimizing experimental time. Thus while new optical methods permit on-line recording (via Multi-photon calcium imaging) and stimulation (via holographic stimulation) of large neural populations, a critical barrier in creating closed-loop experiments that can target and modulate single neurons is the real-time inference of neural activity from streaming recordings. In particular, while multi-photon calcium imaging (CI) is crucial in monitoring neural populations, extracting a single neuron's activity from the fluorescence videos often requires batch processing of the video data. Without batch processing, dimmer neurons and events are harder to identify and unrecognized neurons can create false positives when computing the activity of known neurons. We solve these issues by adapting a recently proposed robust time-trace estimator---Sparse Emulation of Unused Dictionary Objects (SEUDO) algorithm---as a basis for a new on-line processing algorithm that simultaneously identifies neurons in the fluorescence video and infers their time traces in a way that is robust to as-yet unidentified neurons. To achieve real-time SEUDO (realSEUDO), we introduce a combination of new algorithmic improvements, a fast C-based implementation, and a new cell finding loop to enable realSEUDO to identify new cells on-the-fly with no warm-up period. We demonstrate comparable performance to offline algorithms (e.g., CNMF), and improved performance over the current on-line approach (OnACID) at speeds of 120 Hz on average. This speed is faster than the typical 30 Hz framerate, leaving critical computation time for the computation of feedback in a closed-loop setting.
Learning a Single Neuron with Bias Using Gradient Descent
We theoretically study the fundamental problem of learning a single neuron with a bias term ($\mathbf{x}\mapsto \sigma(\langle\mathbf{w},\mathbf{x}\rangle + b)$) in the realizable setting with the ReLU activation, using gradient descent. Perhaps surprisingly, we show that this is a significantly different and more challenging problem than the bias-less case (which was the focus of previous works on single neurons), both in terms of the optimization geometry as well as the ability of gradient methods to succeed in some scenarios. We provide a detailed study of this problem, characterizing the critical points of the objective, demonstrating failure cases, and providing positive convergence guarantees under different sets of assumptions. To prove our results, we develop some tools which may be of independent interest, and improve previous results on learning single neurons.