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 scalable spike source localization


Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Neural Information Processing Systems

Determining the positions of neurons in an extracellular recording is useful for investigating the functional properties of the underlying neural circuitry. In this work, we present a Bayesian modelling approach for localizing the source of individual spikes on high-density, microelectrode arrays. To allow for scalable inference, we implement our model as a variational autoencoder and perform amortized variational inference. We evaluate our method on both biophysically realistic simulated and real extracellular datasets, demonstrating that it is more accurate than and can improve spike sorting performance over heuristic localization methods such as center of mass.


Reviews: Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Neural Information Processing Systems

The paper is fairly clear and proposes a novel biologically inspired model for spike localization. Largely, it is well-down, and provides new paths for exploring the link between individual neurons and electrophysiological properties. It could be used later on for identifying properties of subtypes of neurons and their biological role, for instance, by matching multiple sensing techniques. However, there are a few issues. To me, it's unclear why the data augmentation is truly necessary.


Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Neural Information Processing Systems

Determining the positions of neurons in an extracellular recording is useful for investigating the functional properties of the underlying neural circuitry. In this work, we present a Bayesian modelling approach for localizing the source of individual spikes on high-density, microelectrode arrays. To allow for scalable inference, we implement our model as a variational autoencoder and perform amortized variational inference. We evaluate our method on both biophysically realistic simulated and real extracellular datasets, demonstrating that it is more accurate than and can improve spike sorting performance over heuristic localization methods such as center of mass.