rib fracture
Deep Rib Fracture Instance Segmentation and Classification from CT on the RibFrac Challenge
Yang, Jiancheng, Shi, Rui, Jin, Liang, Huang, Xiaoyang, Kuang, Kaiming, Wei, Donglai, Gu, Shixuan, Liu, Jianying, Liu, Pengfei, Chai, Zhizhong, Xiao, Yongjie, Chen, Hao, Xu, Liming, Du, Bang, Yan, Xiangyi, Tang, Hao, Alessio, Adam, Holste, Gregory, Zhang, Jiapeng, Wang, Xiaoming, He, Jianye, Che, Lixuan, Pfister, Hanspeter, Li, Ming, Ni, Bingbing
Rib fractures are a common and potentially severe injury that can be challenging and labor-intensive to detect in CT scans. While there have been efforts to address this field, the lack of large-scale annotated datasets and evaluation benchmarks has hindered the development and validation of deep learning algorithms. To address this issue, the RibFrac Challenge was introduced, providing a benchmark dataset of over 5,000 rib fractures from 660 CT scans, with voxel-level instance mask annotations and diagnosis labels for four clinical categories (buckle, nondisplaced, displaced, or segmental). The challenge includes two tracks: a detection (instance segmentation) track evaluated by an FROC-style metric and a classification track evaluated by an F1-style metric. During the MICCAI 2020 challenge period, 243 results were evaluated, and seven teams were invited to participate in the challenge summary. The analysis revealed that several top rib fracture detection solutions achieved performance comparable or even better than human experts. Nevertheless, the current rib fracture classification solutions are hardly clinically applicable, which can be an interesting area in the future. As an active benchmark and research resource, the data and online evaluation of the RibFrac Challenge are available at the challenge website. As an independent contribution, we have also extended our previous internal baseline by incorporating recent advancements in large-scale pretrained networks and point-based rib segmentation techniques. The resulting FracNet+ demonstrates competitive performance in rib fracture detection, which lays a foundation for further research and development in AI-assisted rib fracture detection and diagnosis.
@Radiology_AI
To evaluate the performance of a deep learning–based algorithm for automatic detection and labeling of rib fractures from multicenter chest CT images. This retrospective study included 10 943 patients (mean age, 55 years; 6418 men) from six hospitals (January 1, 2017 to December 30, 2019), which consisted of patients with and without rib fractures who underwent CT. The patients were separated into one training set (n 2425), two lesion-level test sets (n 362 and 105), and one examination-level test set (n 8051). Free-response receiver operating characteristic (FROC) score (mean sensitivity of seven different false-positive rates), precision, sensitivity, and F1 score were used as metrics to assess rib fracture detection performance. Area under the receiver operating characteristic curve (AUC), sensitivity, and specificity were employed to evaluate the classification accuracy.
RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT Scans
Yang, Jiancheng, Gu, Shixuan, Wei, Donglai, Pfister, Hanspeter, Ni, Bingbing
Manual rib inspections in computed tomography (CT) scans are clinically critical but labor-intensive, as 24 ribs are typically elongated and oblique in 3D volumes. Automatic rib segmentation methods can speed up the process through rib measurement and visualization. However, prior arts mostly use in-house labeled datasets that are publicly unavailable and work on dense 3D volumes that are computationally inefficient. To address these issues, we develop a labeled rib segmentation benchmark, named \emph{RibSeg}, including 490 CT scans (11,719 individual ribs) from a public dataset. For ground truth generation, we used existing morphology-based algorithms and manually refined its results. Then, considering the sparsity of ribs in 3D volumes, we thresholded and sampled sparse voxels from the input and designed a point cloud-based baseline method for rib segmentation. The proposed method achieves state-of-the-art segmentation performance (Dice~$\approx95\%$) with significant efficiency ($10\sim40\times$ faster than prior arts). The RibSeg dataset, code, and model in PyTorch are available at https://github.com/M3DV/RibSeg.
TextRay: Mining Clinical Reports to Gain a Broad Understanding of Chest X-rays
Laserson, Jonathan, Lantsman, Christine Dan, Cohen-Sfady, Michal, Tamir, Itamar, Goz, Eli, Brestel, Chen, Bar, Shir, Atar, Maya, Elnekave, Eldad
The chest X-ray (CXR) is by far the most commonly performed radiological examination for screening and diagnosis of many cardiac and pulmonary diseases. There is an immense world-wide shortage of physicians capable of providing rapid and accurate interpretation of this study. A radiologist-driven analysis of over two million CXR reports generated an ontology including the 40 most prevalent pathologies on CXR. By manually tagging a relatively small set of sentences, we were able to construct a training set of 959k studies. A deep learning model was trained to predict the findings given the patient frontal and lateral scans. For 12 of the findings we compare the model performance against a team of radiologists and show that in most cases the radiologists agree on average more with the algorithm than with each other.