While large language models have demonstrated this ability, how in-context learning could be performed over graphs is unexplored. In this paper, we develop Pr etraining O ver D iverse I n-Context G raph S y stems (PRODIGY), the first pretraining framework that enables in-context learning over graphs.

Extensive knowledge graphs (KGs) have been constructed to facilitate knowledge-driven tasks across various scenarios. However, existing work usually develops separate reasoning models for different KGs, lacking the ability to generalize and transfer knowledge across diverse KGs and reasoning settings. In this paper, we propose a prompt-based KG foundation model via in-context learning, namely KG-ICL, to achieve a universal reasoning ability. Specifically, we introduce a prompt graph centered with a query-related example fact as context to understand the query relation. To encode prompt graphs with the generalization ability to unseen entities and relations in queries, we first propose a unified tokenizer that maps entities and relations in prompt graphs to predefined tokens. Then, we propose two message passing neural networks to perform prompt encoding and KG reasoning, respectively. We conduct evaluation on 43 different KGs in both transductive and inductive settings. Results indicate that the proposed KG-ICL outperforms baselines on most datasets, showcasing its outstanding generalization and universal reasoning capabilities.

While large language models have demonstrated this ability, how in-context learning could be performed over graphs is unexplored. In this paper, we develop Pr etraining O ver D iverse I n-Context G raph S y stems (PRODIGY), the first pretraining framework that enables in-context learning over graphs.

Extensive knowledge graphs (KGs) have been constructed to facilitate knowledge-driven tasks across various scenarios. However, existing work usually develops separate reasoning models for different KGs, lacking the ability to generalize and transfer knowledge across diverse KGs and reasoning settings. In this paper, we propose a prompt-based KG foundation model via in-context learning, namely KG-ICL, to achieve a universal reasoning ability. Specifically, we introduce a prompt graph centered with a query-related example fact as context to understand the query relation. To encode prompt graphs with the generalization ability to unseen entities and relations in queries, we first propose a unified tokenizer that maps entities and relations in prompt graphs to predefined tokens. Then, we propose two message passing neural networks to perform prompt encoding and KG reasoning, respectively.

--Graph In-Context Learning, with the ability to adapt pre-trained graph models to novel and diverse downstream graphs without updating any parameters, has gained much attention in the community. The key to graph in-context learning is to perform downstream graphs conditioned on chosen prompt examples. Existing methods randomly select subgraphs or edges as prompts, leading to noisy graph prompts and inferior model performance. Additionally, due to the gap between pre-training and testing graphs, when the number of classes in the testing graphs is much greater than that in the training, the in-context learning ability will also significantly deteriorate. T o tackle the aforementioned challenges, we develop a multi-stage adaptive prompt optimization method GraphPrompter, which optimizes the entire process of generating, selecting, and using graph prompts for better in-context learning capabilities. Firstly, Prompt Generator introduces a reconstruction layer to highlight the most informative edges and reduce irrelevant noise for graph prompt construction. Furthermore, in the selection stage, Prompt Selector employs the k -nearest neighbors algorithm and pre-trained selection layers to dynamically choose appropriate samples and minimize the influence of irrelevant prompts. Finally, we leverage a Prompt Augmenter with a cache replacement strategy to enhance the generalization capability of the pre-trained model on new datasets. Extensive experiments show that GraphPrompter effectively enhances the in-context learning ability of graph models. One of the most fascinating properties of Large Language Models (LLMs) is its In-Context Learning capability [1], [2]. It refers to the ability of a pre-trained LLM to achieve competitive results on downstream tasks given only a few prompt examples during the prediction phase, without updating the model weights through fine-tuning approaches. Recently, there have been efforts to transfer this In-Context learning capability from large language models to graph models [3]-[5]. Out of these methods, Prodigy [3] and One For All (OFA) [5] stand out as the most effective frameworks that unify diverse levels of graph-related tasks and achieve competitive in-context learning performance. Generally, the graph in-context learning architecture can be divided into two main parts including data/prompt graph construction and task graph prediction (see Figure 1 as an example for edge classification). Figure 1: Graph In-Context Learning (edge classification as an example) with random prompts selection.

Extensive knowledge graphs (KGs) have been constructed to facilitate knowledge-driven tasks across various scenarios. However, existing work usually develops separate reasoning models for different KGs, lacking the ability to generalize and transfer knowledge across diverse KGs and reasoning settings. In this paper, we propose a prompt-based KG foundation model via in-context learning, namely KG-ICL, to achieve a universal reasoning ability. Specifically, we introduce a prompt graph centered with a query-related example fact as context to understand the query relation. To encode prompt graphs with the generalization ability to unseen entities and relations in queries, we first propose a unified tokenizer that maps entities and relations in prompt graphs to predefined tokens. Then, we propose two message passing neural networks to perform prompt encoding and KG reasoning, respectively. We conduct evaluation on 43 different KGs in both transductive and inductive settings. Results indicate that the proposed KG-ICL outperforms baselines on most datasets, showcasing its outstanding generalization and universal reasoning capabilities. The source code is accessible on GitHub: https://github.com/nju-websoft/KG-ICL.

Urban region representation is crucial for various urban downstream tasks. However, despite the proliferation of methods and their success, acquiring general urban region knowledge and adapting to different tasks remains challenging. Previous work often neglects the spatial structures and functional layouts between entities, limiting their ability to capture transferable knowledge across regions. Further, these methods struggle to adapt effectively to specific downstream tasks, as they do not adequately address the unique features and relationships required for different downstream tasks. In this paper, we propose a $\textbf{G}$raph-based $\textbf{U}$rban $\textbf{R}$egion $\textbf{P}$re-training and $\textbf{P}$rompting framework ($\textbf{GURPP}$) for region representation learning. Specifically, we first construct an urban region graph that integrates detailed spatial entity data for more effective urban region representation. Then, we develop a subgraph-centric urban region pre-training model to capture the heterogeneous and transferable patterns of interactions among entities. To further enhance the adaptability of these embeddings to different tasks, we design two graph-based prompting methods to incorporate explicit/hidden task knowledge. Extensive experiments on various urban region prediction tasks and different cities demonstrate the superior performance of our GURPP framework.

Knowledge Graph (KG) inductive reasoning, which aims to infer missing facts from new KGs that are not seen during training, has been widely adopted in various applications. One critical challenge of KG inductive reasoning is handling low-resource scenarios with scarcity in both textual and structural aspects. In this paper, we attempt to address this challenge with Large Language Models (LLMs). Particularly, we utilize the state-of-the-art LLMs to generate a graph-structural prompt to enhance the pre-trained Graph Neural Networks (GNNs), which brings us new methodological insights into the KG inductive reasoning methods, as well as high generalizability in practice. On the methodological side, we introduce a novel pretraining and prompting framework ProLINK, designed for low-resource inductive reasoning across arbitrary KGs without requiring additional training. On the practical side, we experimentally evaluate our approach on 36 low-resource KG datasets and find that ProLINK outperforms previous methods in three-shot, one-shot, and zero-shot reasoning tasks, exhibiting average performance improvements by 20%, 45%, and 147%, respectively. Furthermore, ProLINK demonstrates strong robustness for various LLM promptings as well as full-shot scenarios.